chore: release v13.0.0 (#579)

Bumps [webpki](https://github.com/briansmith/webpki) from 0.22.1 to 0.22.2.
- [Commits](https://github.com/briansmith/webpki/commits)

---
updated-dependencies:
- dependency-name: webpki
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

.github/ISSUE_TEMPLATE/bug_report.md

@@ -2,32 +2,91 @@
 name: Bug report
 about: Topgrade is misbehaving
 title: ''
-labels: ''
+labels: 'bug'
 assignees: ''
 
 ---
 
-<!-- If you're here to report about a "No asset found" error, please make sure that an hour has been passed since the last release was made. -->
+<!--
+Thanks for taking the time to fill out this bug report! 
+Please make sure to 
+[search for existing issues](https://github.com/topgrade-rs/topgrade/issues) 
+before filing a new one!
 
-## What did you expect to happen?
-
-
-## What actually happened?
-
-
-## Additional Details
-- Which operating system or Linux distribution are you using?
-- How did you install Topgrade?
-- Which version are you running? <!-- Check with `topgrade -V` -->
+Questions labeled with `Optional` can be skipped.
+-->
 
 <!-- 
-Run `topgrade --dry-run` to see which commands Topgrade is running.
-If the command seems wrong and you know why please tell us so.
-If the command seems fine try to run it yourself and tell us if you got a different result from Topgrade.
+If you're here to report about a "No asset found" error, please make sure that 
+an hour has been passed since the last release was made. 
+-->
+
+## Erroneous Behavior
+<!-- 
+What actually happened?
+-->
+
+## Expected Behavior
+<!-- 
+Describe the expected behavior
+-->
+
+## Steps to reproduce
+<!-- 
+A minimal example to reproduce the issue
+-->
+
+## Possible Cause (Optional)
+<!-- 
+If you know the possible cause of the issue, please tell us.
+-->
+
+## Problem persists without calling from topgrade
+<!-- 
+Execute the erroneous command directly to see if the problem persists
+-->
+- [ ] Yes
+- [ ] No
+
+## Did you run topgrade through `Remote Execution`
+
+- [ ] Yes
+- [ ] No
+
+If yes, does the issue still occur when you run topgrade directlly in your
+remote host
+
+- [ ] Yes
+- [ ] No
+
+## Configuration file (Optional)
+<!-- 
+Paste your configuration file inside the code block if you think this issue is 
+related to configuration.
+-->
+
+```toml
+
+```
+
+## Additional Details
+- Operation System/Version
+  <!-- For example, Fedora Linux 38 -->
+
+- Installation
+  <!-- 
+  How did you install topgrade: build from repo / crates.io (cargo install topgrade) 
+  / package manager (which one) / other (describe)
+  -->
+
+- Topgrade version (`topgrade -V`)
+
+## Verbose Output (`topgrade -v`)
+<!-- 
+Paste the verbose output into the pre-tags
 -->
 
 <details>
-<!-- Paste the output of the problematic command with `-v` into the pre-tags -->
 <pre>
 
 </pre>

.github/PULL_REQUEST_TEMPLATE.md

@@ -1,12 +1,18 @@
 ## Standards checklist:
 
 - [ ] The PR title is descriptive.
+- [ ] I have read `CONTRIBUTING.md`
 - [ ] The code compiles (`cargo build`)
 - [ ] The code passes rustfmt (`cargo fmt`)
 - [ ] The code passes clippy (`cargo clippy`)
 - [ ] The code passes tests (`cargo test`)
 - [ ] *Optional:* I have tested the code myself
-    - [ ] I also tested that Topgrade skips the step where needed
+ 
+## For new steps
+- [ ] *Optional:* Topgrade skips this step where needed
+- [ ] *Optional:* The `--dry-run` option works with this step
+- [ ] *Optional:* The `--yes` option works with this step if it is supported by 
+  the underlying command
 
 If you developed a feature or a bug fix for someone else and you do not have the
 means to test it, please tag this person here.

.github/workflows/check-and-lint.yaml

@@ -4,66 +4,88 @@ on:
     branches:
       - main
 
+name: CI
 
-name: Check and Lint
+env:
+  RUST_VER: 'stable'
+  CROSS_VER: '0.2.5'
+  CARGO_NET_RETRY: 3
 
 jobs:
-  check:
-    name: Check
-    strategy:
-      matrix:
-        platform: [ ubuntu-latest, macos-latest, windows-latest ]
-    runs-on: ${{ matrix.platform }}
-    steps:
-      - uses: actions/checkout@v2
-      - uses: actions-rs/toolchain@v1
-        with:
-          profile: minimal
-          toolchain: stable
-          override: true
-      - uses: actions-rs/cargo@v1
-        with:
-          command: check
-
   fmt:
     name: Rustfmt
-    strategy:
-      matrix:
-        platform: [ ubuntu-latest, macos-latest, windows-latest ]
-    runs-on: ${{ matrix.platform }}
+    runs-on: ubuntu-20.04
     steps:
-      - uses: actions/checkout@v2
-      - uses: actions-rs/toolchain@v1
-        with:
-          profile: minimal
-          toolchain: stable
-          override: true
-      - run: rustup component add rustfmt
-      - uses: actions-rs/cargo@v1
-        with:
-          command: fmt
-          args: --all -- --check
+      - name: Checkout code
+        uses: actions/checkout@v3
 
-  clippy:
-    name: Clippy
+      - name: Setup Rust
+        uses: dtolnay/rust-toolchain@master
+        with:
+          toolchain: '${{ env.RUST_VER }}'
+          components: rustfmt
+
+      - name: Run cargo fmt
+        env:
+          TERM: xterm-256color
+        run: |
+          cargo fmt --all -- --check
+
+  main:
+    needs: fmt
+    name: ${{ matrix.target_name }} (check, clippy)
+    runs-on: ${{ matrix.os }}
     strategy:
+      fail-fast: false
       matrix:
-        platform: [ ubuntu-latest, macos-latest, windows-latest ]
-    runs-on: ${{ matrix.platform }}
+        include:
+          - target: x86_64-linux-android
+            target_name: Android
+            use_cross: true
+            os: ubuntu-20.04
+
+          - target: x86_64-unknown-freebsd
+            target_name: FreeBSD
+            use_cross: true
+            os: ubuntu-20.04
+
+          - target: x86_64-unknown-linux-gnu
+            target_name: Linux
+            os: ubuntu-20.04
+
+          - target: x86_64-apple-darwin
+            target_name: macOS
+            os: macos-11
+
+          - target: x86_64-unknown-netbsd
+            target_name: NetBSD
+            use_cross: true
+            os: ubuntu-20.04
+
+          - target: x86_64-pc-windows-msvc
+            target_name: Windows
+            os: windows-2019
     steps:
-      - uses: actions/checkout@v2
-      - uses: actions-rs/toolchain@v1
+      - name: Checkout code
+        uses: actions/checkout@v3
+
+      - name: Setup Rust
+        uses: dtolnay/rust-toolchain@master
         with:
-          toolchain: stable
+          toolchain: '${{ env.RUST_VER }}'
           components: clippy
-          override: true
-      - uses: actions-rs/cargo@v1.0.1
+
+      - name: Setup Rust Cache
+        uses: Swatinem/rust-cache@v2
         with:
-          command: clippy
-          args: --all-targets --locked -- -D warnings
-          name: Clippy Output
-      - uses: actions-rs/cargo@v1.0.1
-        with:
-          command: clippy
-          args: --all-targets --locked --all-features -- -D warnings
-          name: Clippy (All features) Output
+          prefix-key: ${{ matrix.target }}
+
+      - name: Setup cross
+        if: matrix.use_cross == true
+        run: curl -fL --retry 3 https://github.com/cross-rs/cross/releases/download/v${{ env.CROSS_VER }}/cross-x86_64-unknown-linux-musl.tar.gz | tar vxz -C /usr/local/bin
+
+      - name: Run cargo check
+        run: ${{ matrix.use_cross == true && 'cross' || 'cargo' }} check --locked --target ${{ matrix.target }}
+
+      - name: Run cargo clippy
+        run: ${{ matrix.use_cross == true && 'cross' || 'cargo' }} clippy --locked --target ${{ matrix.target }} --all-features -- -D warnings

.github/workflows/crates-publish.yml

@@ -4,7 +4,7 @@ on:
   #   types:
   #     - completed
   release:
-    types: [published, edited]
+    types: [published]
 
 name: Publish to crates.io on release
 

.github/workflows/test-config-creation.yml

@@ -0,0 +1,21 @@
+name: Test Configuration File Creation
+
+on:
+  pull_request:
+
+env:
+  CARGO_TERM_COLOR: always
+
+
+jobs:
+  TestConfig:
+    runs-on: ubuntu-latest
+
+    steps:
+    - uses: actions/checkout@v3
+    - run: |
+          CONFIG_PATH=~/.config/topgrade.toml;
+          if [ -f "$CONFIG_PATH" ]; then rm $CONFIG_PATH; fi
+          cargo build; 
+          ./target/debug/topgrade --dry-run --only system;
+          stat $CONFIG_PATH;

.github/workflows/update_homebrew.yml

@@ -0,0 +1,38 @@
+name: Publish to Homebrew
+
+on:
+  # workflow_run:
+  #   workflows: ["Check SemVer compliance"]
+  #   types:
+  #     - completed
+  workflow_dispatch:
+  push:
+    tags:
+      - "v*"
+
+jobs:
+  homebrew-publish:
+    runs-on: ubuntu-latest
+    steps:
+    - name: Set up Homebrew
+      id: set-up-homebrew
+      uses: Homebrew/actions/setup-homebrew@master
+    - name: Cache Homebrew Bundler RubyGems
+      id: cache
+      uses: actions/cache@v1
+      with:
+        path: ${{ steps.set-up-homebrew.outputs.gems-path }}
+        key: ${{ runner.os }}-rubygems-${{ steps.set-up-homebrew.outputs.gems-hash }}
+        restore-keys: ${{ runner.os }}-rubygems-
+
+    - name: Install Homebrew Bundler RubyGems
+      if: steps.cache.outputs.cache-hit != 'true'
+      run: brew install-bundler-gems
+    - name: Bump formulae
+      uses: Homebrew/actions/bump-formulae@master
+      with:
+        # Custom GitHub access token with only the 'public_repo' scope enabled
+        token: ${{secrets.HOMEBREW_ACCESS_TOKEN}}
+        # Bump only these formulae if outdated
+        formulae: |
+          topgrade

.github/workflows/update_pypi.yml

@@ -0,0 +1,99 @@
+name: Update PyPi
+
+on:
+  release:
+    types: [published]
+
+permissions:
+  contents: read
+
+jobs:
+  linux:
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        target: [x86_64, x86, aarch64]
+    steps:
+      - uses: actions/checkout@v3
+      - name: Build wheels
+        uses: PyO3/maturin-action@v1
+        with:
+          target: ${{ matrix.target }}
+          args: --release --out dist
+          sccache: 'true'
+          manylinux: auto
+      - name: Upload wheels
+        uses: actions/upload-artifact@v3
+        with:
+          name: wheels
+          path: dist
+
+  windows:
+    runs-on: windows-latest
+    strategy:
+      matrix:
+        target: [x64, x86]
+    steps:
+      - uses: actions/checkout@v3
+      - name: Build wheels
+        uses: PyO3/maturin-action@v1
+        with:
+          target: ${{ matrix.target }}
+          args: --release --out dist
+          sccache: 'true'
+      - name: Upload wheels
+        uses: actions/upload-artifact@v3
+        with:
+          name: wheels
+          path: dist
+
+  macos:
+    runs-on: macos-latest
+    strategy:
+      matrix:
+        target: [x86_64, aarch64]
+    steps:
+      - uses: actions/checkout@v3
+      - name: Build wheels
+        uses: PyO3/maturin-action@v1
+        with:
+          target: ${{ matrix.target }}
+          args: --release --out dist
+          sccache: 'true'
+      - name: Upload wheels
+        uses: actions/upload-artifact@v3
+        with:
+          name: wheels
+          path: dist
+
+  sdist:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v3
+      - name: Build sdist
+        uses: PyO3/maturin-action@v1
+        with:
+          command: sdist
+          args: --out dist
+      - name: Upload sdist
+        uses: actions/upload-artifact@v3
+        with:
+          name: wheels
+          path: dist
+
+  release:
+    name: Release
+    runs-on: ubuntu-latest
+    if: "startsWith(github.ref, 'refs/tags/')"
+    needs: [linux, windows, macos, sdist]
+    steps:
+      - uses: actions/download-artifact@v3
+        with:
+          name: wheels
+      - name: Publish to PyPI
+        uses: PyO3/maturin-action@v1
+        env:
+          MATURIN_PYPI_TOKEN: ${{ secrets.PYPI_API_TOKEN }}
+        with:
+          command: upload
+          args: --skip-existing *

CODE_OF_CONDUCT.md

@@ -0,0 +1,128 @@
+# Contributor Covenant Code of Conduct
+
+## Our Pledge
+
+We as members, contributors, and leaders pledge to make participation in our
+community a harassment-free experience for everyone, regardless of age, body
+size, visible or invisible disability, ethnicity, sex characteristics, gender
+identity and expression, level of experience, education, socio-economic status,
+nationality, personal appearance, race, religion, or sexual identity
+and orientation.
+
+We pledge to act and interact in ways that contribute to an open, welcoming,
+diverse, inclusive, and healthy community.
+
+## Our Standards
+
+Examples of behavior that contributes to a positive environment for our
+community include:
+
+* Demonstrating empathy and kindness toward other people
+* Being respectful of differing opinions, viewpoints, and experiences
+* Giving and gracefully accepting constructive feedback
+* Accepting responsibility and apologizing to those affected by our mistakes,
+  and learning from the experience
+* Focusing on what is best not just for us as individuals, but for the
+  overall community
+
+Examples of unacceptable behavior include:
+
+* The use of sexualized language or imagery, and sexual attention or
+  advances of any kind
+* Trolling, insulting or derogatory comments, and personal or political attacks
+* Public or private harassment
+* Publishing others' private information, such as a physical or email
+  address, without their explicit permission
+* Other conduct which could reasonably be considered inappropriate in a
+  professional setting
+
+## Enforcement Responsibilities
+
+Community leaders are responsible for clarifying and enforcing our standards of
+acceptable behavior and will take appropriate and fair corrective action in
+response to any behavior that they deem inappropriate, threatening, offensive,
+or harmful.
+
+Community leaders have the right and responsibility to remove, edit, or reject
+comments, commits, code, wiki edits, issues, and other contributions that are
+not aligned to this Code of Conduct, and will communicate reasons for moderation
+decisions when appropriate.
+
+## Scope
+
+This Code of Conduct applies within all community spaces, and also applies when
+an individual is officially representing the community in public spaces.
+Examples of representing our community include using an official e-mail address,
+posting via an official social media account, or acting as an appointed
+representative at an online or offline event.
+
+## Enforcement
+
+Instances of abusive, harassing, or otherwise unacceptable behavior may be
+reported to the community leaders responsible for enforcement at
+open an issue on GitHub .
+All complaints will be reviewed and investigated promptly and fairly.
+
+All community leaders are obligated to respect the privacy and security of the
+reporter of any incident.
+
+## Enforcement Guidelines
+
+Community leaders will follow these Community Impact Guidelines in determining
+the consequences for any action they deem in violation of this Code of Conduct:
+
+### 1. Correction
+
+**Community Impact**: Use of inappropriate language or other behavior deemed
+unprofessional or unwelcome in the community.
+
+**Consequence**: A private, written warning from community leaders, providing
+clarity around the nature of the violation and an explanation of why the
+behavior was inappropriate. A public apology may be requested.
+
+### 2. Warning
+
+**Community Impact**: A violation through a single incident or series
+of actions.
+
+**Consequence**: A warning with consequences for continued behavior. No
+interaction with the people involved, including unsolicited interaction with
+those enforcing the Code of Conduct, for a specified period of time. This
+includes avoiding interactions in community spaces as well as external channels
+like social media. Violating these terms may lead to a temporary or
+permanent ban.
+
+### 3. Temporary Ban
+
+**Community Impact**: A serious violation of community standards, including
+sustained inappropriate behavior.
+
+**Consequence**: A temporary ban from any sort of interaction or public
+communication with the community for a specified period of time. No public or
+private interaction with the people involved, including unsolicited interaction
+with those enforcing the Code of Conduct, is allowed during this period.
+Violating these terms may lead to a permanent ban.
+
+### 4. Permanent Ban
+
+**Community Impact**: Demonstrating a pattern of violation of community
+standards, including sustained inappropriate behavior,  harassment of an
+individual, or aggression toward or disparagement of classes of individuals.
+
+**Consequence**: A permanent ban from any sort of public interaction within
+the community.
+
+## Attribution
+
+This Code of Conduct is adapted from the [Contributor Covenant][homepage],
+version 2.0, available at
+https://www.contributor-covenant.org/version/2/0/code_of_conduct.html.
+
+Community Impact Guidelines were inspired by [Mozilla's code of conduct
+enforcement ladder](https://github.com/mozilla/diversity).
+
+[homepage]: https://www.contributor-covenant.org
+
+For answers to common questions about this code of conduct, see the FAQ at
+https://www.contributor-covenant.org/faq. Translations are available at
+https://www.contributor-covenant.org/translations.

CONTRIBUTING.md

@@ -0,0 +1,137 @@
+## Contributing to `topgrade`
+
+Thank you for your interest in contributing to `topgrade`! 
+We welcome and encourage contributions of all kinds, such as:
+
+1. Issue reports or feature requests
+2. Documentation improvements
+3. Code (PR or PR Review)
+
+Please follow the [Karma Runner guidelines](http://karma-runner.github.io/6.2/dev/git-commit-msg.html)
+for commit messages.
+
+## Adding a new `step`
+
+In `topgrade`'s term, package manager is called `step`.
+To add a new `step` to `topgrade`: 
+
+1. Add a new variant to 
+   [`enum Step`](https://github.com/topgrade-rs/topgrade/blob/cb7adc8ced8a77addf2cb051d18bba9f202ab866/src/config.rs#L100)
+
+   ```rust
+   pub enum Step {
+       // Existed steps
+       // ...
+
+       // Your new step here!
+       // You may want it to be sorted alphabetically because that looks great:)
+       Xxx,
+   }
+   ```
+
+2. Implement the update function
+
+   You need to find the appropriate location where this update function goes, it should be
+   a file under [`src/steps`](https://github.com/topgrade-rs/topgrade/tree/master/src/steps),
+   the file names are self-explanatory, for example, `step`s related to `zsh` are
+   placed in [`steps/zsh.rs`](https://github.com/topgrade-rs/topgrade/blob/master/src/steps/zsh.rs).
+
+   Then you implement the update function, and put it in the file where it belongs.
+
+   ```rust
+   pub fn run_xxx(ctx: &ExecutionContext) -> Result<()> {
+       // Check if this step is installed, if not, then this update will be skipped.
+       let xxx = require("xxx")?;
+
+       // Print the separator
+       print_separator("xxx");
+
+       // Invoke the new step to get things updated!
+       ctx.run_type()
+          .execute("xxx")
+          .arg(/* args required by this step */)
+          .status_checked()
+   }
+   ```
+
+   Such a update function would be conventionally named `run_xxx()`, where `xxx`
+   is the name of the new step, and it should take a argument of type 
+   `&ExecutionContext`, this is adequate for most cases unless some extra stuff is
+   needed (You can find some examples where extra arguments are needed 
+   [here](https://github.com/topgrade-rs/topgrade/blob/7e48c5dedcfd5d0124bb9f39079a03e27ed23886/src/main.rs#L201-L219)).
+
+   Update function would usually do 3 things:
+   1. Check if the step is installed
+   2. Output the Separator
+   3. Invoke the step
+
+   Still, this is sufficient for most tools, but you may need some extra stuff
+   with complicated `step`.
+
+3. Finally, invoke that update function in `main.rs`
+
+   ```rust
+   runner.execute(Step::Xxx, "xxx", || ItsModule::run_xxx(&ctx))?;
+   ```
+
+   We use [conditional compilation](https://doc.rust-lang.org/reference/conditional-compilation.html)
+   to separate the steps, for example, for steps that are Linux-only, it goes
+   like this:
+
+   ```
+   #[cfg(target_os = "linux")]
+   {
+       // Xxx is Linux-only
+       runner.execute(Step::Xxx, "xxx", || ItsModule::run_xxx(&ctx))?;
+   }
+   ```
+
+   Congrats, you just added a new `step`:)
+
+## Modification to the configuration entries
+
+If your PR has the configuration options 
+(in [`src/config.rs`](https://github.com/topgrade-rs/topgrade/blob/master/src/config.rs)) 
+modified:
+
+1. Adding new options
+2. Changing the existing options
+
+Be sure to apply your changes to
+[`config.example.toml`](https://github.com/topgrade-rs/topgrade/blob/master/config.example.toml),
+and have some basic documentations guiding user how to use these options.
+
+## Before you submit your PR
+
+Make sure your patch passes the following tests on your host:
+
+```shell
+$ cargo build
+$ cargo fmt
+$ cargo clippy
+$ cargo test
+```
+
+Don't worry about other platforms, we have most of them covered in our CI.
+
+## Some tips
+
+1. Locale
+
+   Some `step` respects locale, which means their output can be in language other
+   than English, we should not do check on it.
+
+   For example, one may want to check if a tool works by doing this:
+
+   ```rust
+   let output = Command::new("xxx").arg("--help").output().unwrap();
+   let stdout = from_utf8(output.stdout).expect("Assume it is UTF-8 encoded");
+
+   if stdout.contains("help") {
+       // xxx works
+   }
+   ```
+
+   If `xxx` respects locale, then the above code should work on English system,
+   on a system that does not use English, e.g., it uses Chinese, that `"help"` may be 
+   translated to `"帮助"`, and the above code won't work.

Cargo.toml

@@ -3,9 +3,9 @@ name = "topgrade"
 description = "Upgrade all the things"
 categories = ["os"]
 keywords = ["upgrade", "update"]
-license-file = "LICENSE"
+license = "GPL-3.0"
 repository = "https://github.com/topgrade-rs/topgrade"
-version = "10.1.0"
+version = "13.0.0"
 authors = ["Roey Darwish Dror <roey.ghost@gmail.com>", "Thomas Schönauer <t.schoenauer@hgs-wt.at>"]
 exclude = ["doc/screenshot.gif"]
 edition = "2021"
@@ -21,37 +21,49 @@ path = "src/main.rs"
 
 [dependencies]
 home = "~0.5"
-directories = "~4.0"
+etcetera = "~0.8"
+once_cell = "~1.17"
 serde = { version = "~1.0", features = ["derive"] }
 toml = "0.5"
 which_crate = { version = "~4.1", package = "which" }
 shellexpand = "~2.1"
 clap = { version = "~3.1", features = ["cargo", "derive"] }
-log = "~0.4"
+clap_complete = "~3.1"
+clap_mangen = "~0.1"
 walkdir = "~2.3"
 console = "~0.15"
 lazy_static = "~1.4"
 chrono = "~0.4"
-pretty_env_logger = "~0.4"
 glob = "~0.3"
 strum = { version = "~0.24", features = ["derive"] }
 thiserror = "~1.0"
-anyhow = "~1.0"
-tempfile = "~3.2"
+tempfile = "~3.6"
 cfg-if = "~1.0"
-tokio = { version = "~1.5", features = ["process", "rt-multi-thread"] }
+tokio = { version = "~1.18", features = ["process", "rt-multi-thread"] }
 futures = "~0.3"
-regex = "~1.5"
-sys-info = "~0.9"
+regex = "~1.7"
 semver = "~1.0"
 shell-words = "~1.1"
+color-eyre = "~0.6"
+tracing = { version = "~0.1", features = ["attributes", "log"] }
+tracing-subscriber = { version = "~0.3", features = ["env-filter", "time"] }
+merge = "~0.1"
+regex-split = "~0.1"
+notify-rust = "~4.8"
 
-[target.'cfg(target_os = "macos")'.dependencies]
-notify-rust = "~4.5"
+[package.metadata.generate-rpm]
+assets = [{source = "target/release/topgrade", dest="/usr/bin/topgrade"}]
+
+[package.metadata.generate-rpm.requires]
+git = "*"
+
+[package.metadata.deb]
+depends = "$auto,git"
 
 [target.'cfg(unix)'.dependencies]
+libc = "~0.2"
 nix = "~0.24"
-rust-ini = "~0.18"
+rust-ini = "~0.19"
 self_update_crate = { version = "~0.30", default-features = false, optional = true, package = "self_update", features = ["archive-tar", "compression-flate2", "rustls"] }
 
 [target.'cfg(windows)'.dependencies]

README.md

@@ -1,16 +1,17 @@
 <div align="center">
-  <img alt="Topgrade" src="doc/topgrade.png" width="850px">
+  <h1>
+    <img alt="Topgrade" src="doc/topgrade_transparent.png" width="850px">
+  </h1>
   
-  <!--
-  <a href="https://github.com/topgrade-rs/topgrade/releases"><img alt="GitHub Release" src="https://img.shields.io/github/release/r-darwish/topgrade.svg"></a>
+  <a href="https://github.com/topgrade-rs/topgrade/releases"><img alt="GitHub Release" src="https://img.shields.io/github/release/topgrade-rs/topgrade.svg"></a>
   <a href="https://crates.io/crates/topgrade"><img alt="crates.io" src="https://img.shields.io/crates/v/topgrade.svg"></a>
   <a href="https://aur.archlinux.org/packages/topgrade"><img alt="AUR" src="https://img.shields.io/aur/version/topgrade.svg"></a>
   <a href="https://formulae.brew.sh/formula/topgrade"><img alt="Homebrew" src="https://img.shields.io/homebrew/v/topgrade.svg"></a>
-  -->  
 
-  <img alt="Demo" src="doc/screenshot.gif" width="550px">
+  <img alt="Demo" src="doc/topgrade_demo.gif">
 </div>
 
+
 ## Introduction
 
 > **Note**
@@ -22,48 +23,74 @@ To remedy this, **Topgrade** detects which tools you use and runs the appropriat
 
 ## Installation
 
-- Arch Linux: [AUR](https://aur.archlinux.org/packages/topgrade) package.
-- NixOS: _topgrade_ package in `nixpkgs`.
-- macOS: [Homebrew](https://formulae.brew.sh/formula/topgrade) or [MacPorts](https://ports.macports.org/port/topgrade/).
+[![Packaging status](https://repology.org/badge/vertical-allrepos/topgrade.svg)](https://repology.org/project/topgrade/versions)
 
-Other systems users can either use `cargo install` or use the compiled binaries from the release page.
+- Arch Linux: [AUR](https://aur.archlinux.org/packages/topgrade)
+- NixOS: [Nixpkgs](https://search.nixos.org/packages?show=topgrade)
+- Void Linux: [XBPS](https://voidlinux.org/packages/?arch=x86_64&q=topgrade)
+- macOS: [Homebrew](https://formulae.brew.sh/formula/topgrade) or [MacPorts](https://ports.macports.org/port/topgrade/)
+- Windows: [Scoop](https://github.com/ScoopInstaller/Main/blob/master/bucket/topgrade.json)
+- PyPi: [pip](https://pypi.org/project/topgrade/)
+
+Other systems users can either use `cargo install` or the compiled binaries from the release page.
 The compiled binaries contain a self-upgrading feature.
 
-Topgrade requires Rust 1.51 or above.
-
-## Documentation
-
-> **Warning**
-> Work in Progress
-
-You can visit the documentation at [topgrade-rs.github.io](https://topgrade-rs.github.io/) .
+> Currently, Topgrade requires Rust 1.65 or above. In general, Topgrade tracks 
+> the latest stable toolchain.
 
 ## Usage
 
 Just run `topgrade`.
-See [the documentation](https://topgrade-rs.github.io/) for the list of things Topgrade supports.
 
-## Customization
+Visit the documentation at [topgrade-rs.github.io](https://topgrade-rs.github.io/) for more information.
+
+> **Warning**
+> Work in Progress
+
+## Configuration 
 
 See `config.example.toml` for an example configuration file.
 
-### Configuration path
+### Configuration Path
 
-The configuration should be placed in the following paths depending by the operating system:
+#### `CONFIG_DIR` on each platform
+- **Windows**: `%APPDATA%`
+- **macOS** and **other Unix systems**: `${XDG_CONFIG_HOME:-~/.config}`
 
-- **Windows** - `%APPDATA%/topgrade.toml`
-- **macOS** and **other Unix systems** - `${XDG_CONFIG_HOME:-~/.config}/topgrade.toml`
+`topgrade` will look for the configuration file in the following places, in order of priority:
+
+1. `CONFIG_DIR/topgrade.toml`
+2. `CONFIG_DIR/topgrade/topgrade.toml`
+
+If the file with higher priority is present, no matter it is valid or not, the other configuration files will be ignored.
+
+On the first run(no configuration file exists), `topgrade` will create a configuration file at `CONFIG_DIR/topgrade.toml` for you.
+
+### Custom Commands
+
+Custom commands can be defined in the config file which can be run before, during, or after the inbuilt commands, as required.
+By default, the custom commands are run using a new shell according to the `$SHELL` environment variable on unix (falls back to `sh`) or `pwsh` on windows (falls back to `powershell`).
+
+On unix, if you want to run your command using an interactive shell, for example to source your shell's rc files, you can add `-i` at the start of your custom command.
+But note that this requires the command to exit the shell correctly or else the shell will hang indefinitely.
+
+## Remote Execution
+
+You can specify a key called `remote_topgrades` in the configuration file.
+This key should contain a list of hostnames that have Topgrade installed on them.
+Topgrade will use `ssh` to run `topgrade` on remote hosts before acting locally.
+To limit the execution only to specific hosts use the `--remote-host-limit` parameter.
 
 ## Contribution
 
 ### Problems or missing features?
 
-Open a new Issue describing your problem and if possible with a possible solution.
+Open a new issue describing your problem and if possible provide a solution.
 
 ### Missing a feature or found an unsupported tool/distro?
 
 Just let us now what you are missing by opening an issue.
-For tools please open an Issue describing the tool, which platforms it supports and if possible, give us an example of its usage.
+For tools, please open an issue describing the tool, which platforms it supports and if possible, give us an example of its usage.
 
 ### Want to contribute to the code?
 
@@ -71,18 +98,9 @@ Just fork the repository and start coding.
 
 ### Contribution Guidelines
 
-- Check if your code passes `cargo fmt` and `cargo clippy`.
-- Check if your code is self explanatory, if not it should be documented by comments.
-- Make a Pull Request to the dev branch for new features or to the bug-fixes branch for bug fixes.
+See [CONTRIBUTING.md](https://github.com/topgrade-rs/topgrade/blob/master/CONTRIBUTING.md)
 
-## Remote execution
-
-You can specify a key called `remote_topgrades` in the configuration file.
-This key should contain a list of hostnames that have Topgrade installed on them.
-Topgrade will use `ssh` to run `topgrade` on remote hosts before acting locally.
-To limit the execution only to specific hosts use the `--remote-host-limit` parameter.
-
-## ToDo
+## Roadmap
 
 - [ ] Add a proper testing framework to the code base.
 - [ ] Add unit tests for package managers.

SECURITY.md

@@ -0,0 +1,11 @@
+# Security Policy
+
+## Supported Versions
+
+We only support the latest major version and each subversion.
+
+| Version  | Supported          |
+| -------- | ------------------ |
+| 10.0.x   | :white_check_mark: |
+| < 10.0   | :x:                |
+

clippy.toml

@@ -0,0 +1,5 @@
+disallowed-methods = [
+    { path = "std::process::Command::output", reason = "Use `output_checked[_with][_utf8]`" },
+    { path = "std::process::Command::spawn", reason = "Use `spawn_checked`" },
+    { path = "std::process::Command::status", reason = "Use `status_checked`" },
+]

config.example.toml

@@ -1,113 +1,240 @@
-# Don't ask for confirmations
-#assume_yes = true
+# Include any additional configuration file(s)
+# [include] sections are processed in the order you write them
+# Files in $CONFIG_DIR/topgrade.d/ are automatically included before this file
+[include]
+# paths = ["/etc/topgrade.toml"]
+
+
+[misc]
+# Run `sudo -v` to cache credentials at the start of the run
+# This avoids a blocking password prompt in the middle of an unattended run
+# (default: false)
+# pre_sudo = false
+
+# Sudo command to be used
+# sudo_command = "sudo"
 
 # Disable specific steps - same options as the command line flag
-#disable = ["system", "emacs"]
+# disable = ["system", "emacs"]
 
 # Ignore failures for these steps
-#ignore_failures = ["powershell"]
-
-# Run specific steps - same options as the command line flag
-#only = ["system", "emacs"]
-
-# Do not ask to retry failed steps (default: false)
-#no_retry = true
-
-# Run inside tmux
-#run_in_tmux = true
+# ignore_failures = ["powershell"]
 
 # List of remote machines with Topgrade installed on them
-#remote_topgrades = ["toothless", "pi", "parnas"]
-
-# Arguments to pass SSH when upgrading remote systems
-#ssh_arguments = "-o ConnectTimeout=2"
+# remote_topgrades = ["toothless", "pi", "parnas"]
 
 # Path to Topgrade executable on remote machines
-#remote_topgrade_path = ".cargo/bin/topgrade"
+# remote_topgrade_path = ".cargo/bin/topgrade"
+
+# Arguments to pass to SSH when upgrading remote systems
+# ssh_arguments = "-o ConnectTimeout=2"
 
 # Arguments to pass tmux when pulling Repositories
-#tmux_arguments = "-S /var/tmux.sock"
+# tmux_arguments = "-S /var/tmux.sock"
 
-# Do not set the terminal title
-#set_title = false
+# Do not set the terminal title (dfault: true)
+# set_title = true
 
-# Display the time in step titles
+# Display the time in step titles (default: true)
 # display_time = true
 
-# Cleanup temporary or old files
-#cleanup = true
+# Don't ask for confirmations (no default value)
+# assume_yes = true
 
-# Skip sending a notification at the end of a run
-#skip_notify = true
+# Do not ask to retry failed steps (default: false)
+# no_retry = true
 
-[git]
-#max_concurrency = 5
-# Additional git repositories to pull
-#repos = [
-#    "~/src/*/",
-#    "~/.config/something"
-#]
+# Run inside tmux (default: false)
+# run_in_tmux = true
 
-# Don't pull the predefined git repos
-#pull_predefined = false
+# Cleanup temporary or old files (default: false)
+# cleanup = true
 
-# Arguments to pass Git when pulling Repositories
-#arguments = "--rebase --autostash"
+# Send a notification for every step (default: false)
+# notify_each_step = false
+
+# Skip sending a notification at the end of a run (default: false)
+# skip_notify = true
+
+# The Bash-it branch to update (default: "stable")
+# bashit_branch = "stable"
+
+# Run specific steps - same options as the command line flag
+# only = ["system", "emacs"]
+
+# Whether to self update
+#
+# this will be ignored if the binary is built without self update support
+#
+# available also via setting the environment variable TOPGRADE_NO_SELF_UPGRADE)
+# no_self_update = true
+
+# Extra tracing filter directives
+# These are prepended to the `--log-filter` argument
+# See: https://docs.rs/tracing-subscriber/latest/tracing_subscriber/filter/struct.EnvFilter.html#directives
+# log_filters = ["topgrade::command=debug", "warn"]
 
-[composer]
-#self_update = true
 
 # Commands to run before anything
 [pre_commands]
-#"Emacs Snapshot" = "rm -rf ~/.emacs.d/elpa.bak && cp -rl ~/.emacs.d/elpa ~/.emacs.d/elpa.bak"
+# "Emacs Snapshot" = "rm -rf ~/.emacs.d/elpa.bak && cp -rl ~/.emacs.d/elpa ~/.emacs.d/elpa.bak"
+
+
+# Commands to run after anything
+[post_commands]
+# "Emacs Snapshot" = "rm -rf ~/.emacs.d/elpa.bak && cp -rl ~/.emacs.d/elpa ~/.emacs.d/elpa.bak"
+
 
 # Custom commands
 [commands]
-#"Python Environment" = "~/dev/.env/bin/pip install -i https://pypi.python.org/simple -U --upgrade-strategy eager jupyter"
+# "Python Environment" = "~/dev/.env/bin/pip install -i https://pypi.python.org/simple -U --upgrade-strategy eager jupyter"
+# "Custom command using interactive shell (unix)" = "-i vim_upgrade"
+
+
+[python]
+# enable_pip_review = true                         ###disabled by default
+# enable_pip_review_local = true                   ###disabled by default
+# enable_pipupgrade = true                         ###disabled by default
+# pipupgrade_arguments = "-y -u --pip-path pip"    ###disabled by default
+
+
+[composer]
+# self_update = true
+
 
 [brew]
-#greedy_cask = true
-#autoremove = true
+# greedy_cask = true
+# autoremove = true
+
 
 [linux]
-# Arch Package Manager to use. Allowed values: autodetect, trizen, aura, paru, yay, pikaur, pacman, pamac.
-#arch_package_manager = "pacman"
+# Arch Package Manager to use.
+# Allowed values:
+#   autodetect, aura, garuda_update, pacman, pamac, paru, pikaur, trizen, yay
+# arch_package_manager = "pacman"
+
 # Arguments to pass yay (or paru) when updating packages
-#yay_arguments = "--nodevel"
-#aura_aur_arguments = "-kx"
-#aura_pacman_arguments = ""
-#show_arch_news = true
-#trizen_arguments = "--devel"
-#pikaur_arguments = ""
-#pamac_arguments = "--no-devel"
-#enable_tlmgr = true
-#emerge_sync_flags = "-q"
-#emerge_update_flags = "-uDNa --with-bdeps=y world"
-#redhat_distro_sync = false
-#rpm_ostree = false
+# yay_arguments = "--nodevel"
+
+# Arguments to pass dnf when updating packages
+# dnf_arguments = "--refresh"
+
+# aura_aur_arguments = "-kx"
+
+# aura_pacman_arguments = ""
+# garuda_update_arguments = ""
+
+# show_arch_news = true
+
+# trizen_arguments = "--devel"
+
+# pikaur_arguments = ""
+
+# pamac_arguments = "--no-devel"
+
+# enable_tlmgr = true
+
+# emerge_sync_flags = "-q"
+
+# emerge_update_flags = "-uDNa --with-bdeps=y world"
+
+# redhat_distro_sync = false
+
+# suse_dup = false
+
+# rpm_ostree = false
+
+# nix_arguments = "--flake"
+
+# nix_env_arguments = "--prebuilt-only"
+
+# Extra Home Manager arguments
+# home_manager_arguments = ["--flake", "file"]
+
+
+[git]
+# max_concurrency = 5
+
+# Git repositories that you want to pull and push
+# repos = [
+#     "~/src/*/",
+#     "~/.config/something"
+# ]
+
+# Repositories that you only want to pull
+# pull_only_repos = [
+#     "~/.config/something_else"
+# ]
+
+# Repositories that you only want to push
+# push_only_repos = [
+#     "~/src/*/",
+#     "~/.config/something_third"
+# ]
+
+# Don't pull the predefined git repos
+# pull_predefined = false
+
+# Arguments to pass Git when pulling repositories
+# pull_arguments = "--rebase --autostash"
+
+# Arguments to pass Git when pushing repositories
+# push_arguments = "--all"
+
 
 [windows]
 # Manually select Windows updates
-#accept_all_updates = false
-#open_remotes_in_new_terminal = true
+# accept_all_updates = false
+
+# open_remotes_in_new_terminal = true
+
+# wsl_update_pre_release = true
+
+# wsl_update_use_web_download = true
 
 # Causes Topgrade to rename itself during the run to allow package managers
 # to upgrade it. Use this only if you installed Topgrade by using a package
 # manager such as Scoop or Cargo
-#self_rename = true
+# self_rename = true
+
 
 [npm]
 # Use sudo if the NPM directory isn't owned by the current user
-#use_sudo = true
+# use_sudo = true
+
+
+[yarn]
+# Run `yarn global upgrade` with `sudo`
+# use_sudo = true
+
+
+[vim]
+# For `vim-plug`, execute `PlugUpdate!` instead of `PlugUpdate`
+# force_plug_update = true
+
 
 [firmware]
 # Offer to update firmware; if false just check for and display available updates
-#upgrade = true
+# upgrade = true
+
+
+[vagrant]
+# Vagrant directories
+# directories = []
+
+# power on vagrant boxes if needed
+# power_on = true
+
+# Always suspend vagrant boxes instead of powering off
+# always_suspend = true
+
 
 [flatpak]
 # Use sudo for updating the system-wide installation
-#use_sudo = true
+# use_sudo = true
+
 
 [distrobox]
-#use_root = false
-#containers = ["archlinux-latest"]
+# use_root = false
+
+# containers = ["archlinux-latest"]

pyproject.toml

@@ -0,0 +1,16 @@
+[build-system]
+requires = ["maturin>=1.0,<2.0"]
+build-backend = "maturin"
+
+[project]
+name = "topgrade"
+requires-python = ">=3.7"
+classifiers = [
+    "Programming Language :: Rust",
+    "Programming Language :: Python :: Implementation :: CPython",
+    "Programming Language :: Python :: Implementation :: PyPy",
+]
+
+
+[tool.maturin]
+bindings = "bin"

src/command.rs

@@ -0,0 +1,246 @@
+//! Utilities for running commands and providing user-friendly error messages.
+
+use std::fmt::Display;
+use std::process::Child;
+use std::process::{Command, ExitStatus, Output};
+
+use color_eyre::eyre;
+use color_eyre::eyre::eyre;
+use color_eyre::eyre::Context;
+
+use crate::error::TopgradeError;
+
+use tracing::debug;
+
+/// Like [`Output`], but UTF-8 decoded.
+#[derive(Clone, Debug, PartialEq, Eq)]
+pub struct Utf8Output {
+    pub status: ExitStatus,
+    pub stdout: String,
+    pub stderr: String,
+}
+
+impl TryFrom<Output> for Utf8Output {
+    type Error = eyre::Error;
+
+    fn try_from(Output { status, stdout, stderr }: Output) -> Result<Self, Self::Error> {
+        let stdout = String::from_utf8(stdout).map_err(|err| {
+            eyre!(
+                "Stdout contained invalid UTF-8: {}",
+                String::from_utf8_lossy(err.as_bytes())
+            )
+        })?;
+        let stderr = String::from_utf8(stderr).map_err(|err| {
+            eyre!(
+                "Stderr contained invalid UTF-8: {}",
+                String::from_utf8_lossy(err.as_bytes())
+            )
+        })?;
+
+        Ok(Utf8Output { status, stdout, stderr })
+    }
+}
+
+impl TryFrom<&Output> for Utf8Output {
+    type Error = eyre::Error;
+
+    fn try_from(Output { status, stdout, stderr }: &Output) -> Result<Self, Self::Error> {
+        let stdout = String::from_utf8(stdout.to_vec()).map_err(|err| {
+            eyre!(
+                "Stdout contained invalid UTF-8: {}",
+                String::from_utf8_lossy(err.as_bytes())
+            )
+        })?;
+        let stderr = String::from_utf8(stderr.to_vec()).map_err(|err| {
+            eyre!(
+                "Stderr contained invalid UTF-8: {}",
+                String::from_utf8_lossy(err.as_bytes())
+            )
+        })?;
+        let status = *status;
+
+        Ok(Utf8Output { status, stdout, stderr })
+    }
+}
+
+impl Display for Utf8Output {
+    fn fmt(&self, f: &mut std::fmt::Formatter<'_>) -> std::fmt::Result {
+        write!(f, "{}", self.stdout)
+    }
+}
+
+/// Extension trait for [`Command`], adding helpers to gather output while checking the exit
+/// status.
+///
+/// These also give us significantly better error messages, which include:
+///
+/// 1. The command and arguments that were executed, escaped with familiar `sh` syntax.
+/// 2. The exit status of the command or the signal that killed it.
+/// 3. If we were capturing the output of the command, rather than forwarding it to the user's
+///    stdout/stderr, the error message includes the command's stdout and stderr output.
+///
+/// Additionally, executing commands with these methods will log the command at debug-level,
+/// useful when gathering error reports.
+pub trait CommandExt {
+    type Child;
+
+    /// Like [`Command::output`], but checks the exit status and provides nice error messages.
+    ///
+    /// Returns an `Err` if the command failed to execute or returned a non-zero exit code.
+    #[track_caller]
+    fn output_checked(&mut self) -> eyre::Result<Output> {
+        self.output_checked_with(|output: &Output| if output.status.success() { Ok(()) } else { Err(()) })
+    }
+
+    /// Like [`output_checked`], but also decodes Stdout and Stderr as UTF-8.
+    ///
+    /// Returns an `Err` if the command failed to execute, returned a non-zero exit code, or if the
+    /// output contains invalid UTF-8.
+    #[track_caller]
+    fn output_checked_utf8(&mut self) -> eyre::Result<Utf8Output> {
+        let output = self.output_checked()?;
+        output.try_into()
+    }
+
+    /// Like [`output_checked`] but a closure determines if the command failed instead of
+    /// [`ExitStatus::success`].
+    ///
+    /// Returns an `Err` if the command failed to execute or if `succeeded` returns an `Err`.
+    /// (This lets the caller substitute their own notion of "success" instead of assuming
+    /// non-zero exit codes indicate success.)
+    #[track_caller]
+    fn output_checked_with(&mut self, succeeded: impl Fn(&Output) -> Result<(), ()>) -> eyre::Result<Output>;
+
+    /// Like [`output_checked_with`], but also decodes Stdout and Stderr as UTF-8.
+    ///
+    /// Returns an `Err` if the command failed to execute, if `succeeded` returns an `Err`, or if
+    /// the output contains invalid UTF-8.
+    #[track_caller]
+    fn output_checked_with_utf8(
+        &mut self,
+        succeeded: impl Fn(&Utf8Output) -> Result<(), ()>,
+    ) -> eyre::Result<Utf8Output> {
+        // This decodes the Stdout and Stderr as UTF-8 twice...
+        let output =
+            self.output_checked_with(|output| output.try_into().map_err(|_| ()).and_then(|o| succeeded(&o)))?;
+        output.try_into()
+    }
+
+    /// Like [`Command::status`], but gives a nice error message if the status is unsuccessful
+    /// rather than returning the [`ExitStatus`].
+    ///
+    /// Returns `Ok` if the command executes successfully, returns `Err` if the command fails to
+    /// execute or returns a non-zero exit code.
+    #[track_caller]
+    fn status_checked(&mut self) -> eyre::Result<()> {
+        self.status_checked_with(|status| if status.success() { Ok(()) } else { Err(()) })
+    }
+
+    /// Like [`status_checked`], but gives a nice error message if the status is unsuccessful
+    /// rather than returning the [`ExitStatus`].
+    ///
+    /// Returns `Ok` if the command executes successfully, returns `Err` if the command fails to
+    /// execute or if `succeeded` returns an `Err`.
+    /// (This lets the caller substitute their own notion of "success" instead of assuming
+    /// non-zero exit codes indicate success.)
+    #[track_caller]
+    fn status_checked_with(&mut self, succeeded: impl Fn(ExitStatus) -> Result<(), ()>) -> eyre::Result<()>;
+
+    /// Like [`Command::spawn`], but gives a nice error message if the command fails to
+    /// execute.
+    #[track_caller]
+    fn spawn_checked(&mut self) -> eyre::Result<Self::Child>;
+}
+
+impl CommandExt for Command {
+    type Child = Child;
+
+    fn output_checked_with(&mut self, succeeded: impl Fn(&Output) -> Result<(), ()>) -> eyre::Result<Output> {
+        let command = log(self);
+
+        // This is where we implement `output_checked`, which is what we prefer to use instead of
+        // `output`, so we allow `Command::output` here.
+        #[allow(clippy::disallowed_methods)]
+        let output = self
+            .output()
+            .with_context(|| format!("Failed to execute `{command}`"))?;
+
+        if succeeded(&output).is_ok() {
+            Ok(output)
+        } else {
+            let mut message = format!("Command failed: `{command}`");
+            let stderr = String::from_utf8_lossy(&output.stderr);
+            let stdout = String::from_utf8_lossy(&output.stdout);
+
+            let stdout_trimmed = stdout.trim();
+            if !stdout_trimmed.is_empty() {
+                message.push_str(&format!("\n\nStdout:\n{stdout_trimmed}"));
+            }
+            let stderr_trimmed = stderr.trim();
+            if !stderr_trimmed.is_empty() {
+                message.push_str(&format!("\n\nStderr:\n{stderr_trimmed}"));
+            }
+
+            let (program, _) = get_program_and_args(self);
+            let err = TopgradeError::ProcessFailedWithOutput(program, output.status, stderr.into_owned());
+
+            let ret = Err(err).with_context(|| message);
+            debug!("Command failed: {ret:?}");
+            ret
+        }
+    }
+
+    fn status_checked_with(&mut self, succeeded: impl Fn(ExitStatus) -> Result<(), ()>) -> eyre::Result<()> {
+        let command = log(self);
+        let message = format!("Failed to execute `{command}`");
+
+        // This is where we implement `status_checked`, which is what we prefer to use instead of
+        // `status`, so we allow `Command::status` here.
+        #[allow(clippy::disallowed_methods)]
+        let status = self.status().with_context(|| message.clone())?;
+
+        if succeeded(status).is_ok() {
+            Ok(())
+        } else {
+            let (program, _) = get_program_and_args(self);
+            let err = TopgradeError::ProcessFailed(program, status);
+            let ret = Err(err).with_context(|| format!("Command failed: `{command}`"));
+            debug!("Command failed: {ret:?}");
+            ret
+        }
+    }
+
+    fn spawn_checked(&mut self) -> eyre::Result<Self::Child> {
+        let command = log(self);
+        let message = format!("Failed to execute `{command}`");
+
+        // This is where we implement `spawn_checked`, which is what we prefer to use instead of
+        // `spawn`, so we allow `Command::spawn` here.
+        #[allow(clippy::disallowed_methods)]
+        {
+            self.spawn().with_context(|| message.clone())
+        }
+    }
+}
+
+fn get_program_and_args(cmd: &Command) -> (String, String) {
+    // We're not doing anything weird with commands that are invalid UTF-8 so this is fine.
+    let program = cmd.get_program().to_string_lossy().into_owned();
+    let args = shell_words::join(cmd.get_args().map(|arg| arg.to_string_lossy()));
+    (program, args)
+}
+
+fn format_program_and_args(cmd: &Command) -> String {
+    let (program, args) = get_program_and_args(cmd);
+    if args.is_empty() {
+        program
+    } else {
+        format!("{program} {args}")
+    }
+}
+
+fn log(cmd: &Command) -> String {
+    let command = format_program_and_args(cmd);
+    debug!("Executing command `{command}`");
+    command
+}

src/ctrlc/windows.rs

@@ -1,5 +1,6 @@
 //! A stub for Ctrl + C handling.
 use crate::ctrlc::interrupted::set_interrupted;
+use tracing::error;
 use winapi::shared::minwindef::{BOOL, DWORD, FALSE, TRUE};
 use winapi::um::consoleapi::SetConsoleCtrlHandler;
 use winapi::um::wincon::CTRL_C_EVENT;
@@ -16,6 +17,6 @@ extern "system" fn handler(ctrl_type: DWORD) -> BOOL {
 
 pub fn set_handler() {
     if 0 == unsafe { SetConsoleCtrlHandler(Some(handler), TRUE) } {
-        log::error!("Cannot set a control C handler")
+        error!("Cannot set a control C handler")
     }
 }

src/error.rs

@@ -4,20 +4,20 @@ use thiserror::Error;
 
 #[derive(Error, Debug, PartialEq, Eq)]
 pub enum TopgradeError {
-    #[error("{0}")]
-    ProcessFailed(ExitStatus),
+    #[error("`{0}` failed: {1}")]
+    ProcessFailed(String, ExitStatus),
 
-    #[error("{0}: {1}")]
-    ProcessFailedWithOutput(ExitStatus, String),
-
-    #[error("Sudo is required for this step")]
-    #[allow(dead_code)]
-    SudoRequired,
+    #[error("`{0}` failed: {1}")]
+    ProcessFailedWithOutput(String, ExitStatus, String),
 
     #[error("Unknown Linux Distribution")]
     #[cfg(target_os = "linux")]
     UnknownLinuxDistribution,
 
+    #[error("File \"/etc/os-release\" does not exist or is empty")]
+    #[cfg(target_os = "linux")]
+    EmptyOSReleaseFile,
+
     #[error("Failed getting the system package manager")]
     #[cfg(target_os = "linux")]
     FailedGettingPackageManager,

src/execution_context.rs

@@ -1,51 +1,43 @@
 #![allow(dead_code)]
 use crate::executor::RunType;
 use crate::git::Git;
-use crate::utils::require_option;
+use crate::sudo::Sudo;
+use crate::utils::{require_option, REQUIRE_SUDO};
 use crate::{config::Config, executor::Executor};
-use anyhow::Result;
-use directories::BaseDirs;
-use std::path::{Path, PathBuf};
+use color_eyre::eyre::Result;
+use std::env::var;
+use std::path::Path;
+use std::sync::Mutex;
 
 pub struct ExecutionContext<'a> {
     run_type: RunType,
-    sudo: &'a Option<PathBuf>,
+    sudo: Option<Sudo>,
     git: &'a Git,
     config: &'a Config,
-    base_dirs: &'a BaseDirs,
+    /// Name of a tmux session to execute commands in, if any.
+    /// This is used in `./steps/remote/ssh.rs`, where we want to run `topgrade` in a new
+    /// tmux window for each remote.
+    tmux_session: Mutex<Option<String>>,
+    /// True if topgrade is running under ssh.
+    under_ssh: bool,
 }
 
 impl<'a> ExecutionContext<'a> {
-    pub fn new(
-        run_type: RunType,
-        sudo: &'a Option<PathBuf>,
-        git: &'a Git,
-        config: &'a Config,
-        base_dirs: &'a BaseDirs,
-    ) -> ExecutionContext<'a> {
-        ExecutionContext {
+    pub fn new(run_type: RunType, sudo: Option<Sudo>, git: &'a Git, config: &'a Config) -> Self {
+        let under_ssh = var("SSH_CLIENT").is_ok() || var("SSH_TTY").is_ok();
+        Self {
             run_type,
             sudo,
             git,
             config,
-            base_dirs,
+            tmux_session: Mutex::new(None),
+            under_ssh,
         }
     }
 
     pub fn execute_elevated(&self, command: &Path, interactive: bool) -> Result<Executor> {
-        let sudo = require_option(self.sudo.clone(), "Sudo is required for this operation".into())?;
-        let mut cmd = self.run_type.execute(&sudo);
-
-        if sudo.ends_with("sudo") {
-            cmd.arg("--preserve-env=DIFFPROG");
-        }
-
-        if interactive {
-            cmd.arg("-i");
-        }
-
-        cmd.arg(command);
-        Ok(cmd)
+        let sudo = require_option(self.sudo.as_ref(), REQUIRE_SUDO.to_string())?;
+        Ok(sudo.execute_elevated(self, command, interactive))
     }
 
     pub fn run_type(&self) -> RunType {
@@ -56,15 +48,23 @@ impl<'a> ExecutionContext<'a> {
         self.git
     }
 
-    pub fn sudo(&self) -> &Option<PathBuf> {
-        self.sudo
+    pub fn sudo(&self) -> &Option<Sudo> {
+        &self.sudo
     }
 
     pub fn config(&self) -> &Config {
         self.config
     }
 
-    pub fn base_dirs(&self) -> &BaseDirs {
-        self.base_dirs
+    pub fn under_ssh(&self) -> bool {
+        self.under_ssh
+    }
+
+    pub fn set_tmux_session(&self, session_name: String) {
+        self.tmux_session.lock().unwrap().replace(session_name);
+    }
+
+    pub fn get_tmux_session(&self) -> Option<String> {
+        self.tmux_session.lock().unwrap().clone()
     }
 }

src/executor.rs

@@ -1,11 +1,13 @@
 //! Utilities for command execution
-use crate::error::{DryRun, TopgradeError};
-use crate::utils::{Check, CheckWithCodes};
-use anyhow::Result;
-use log::{debug, trace};
 use std::ffi::{OsStr, OsString};
 use std::path::Path;
-use std::process::{Child, Command, ExitStatus};
+use std::process::{Child, Command, ExitStatus, Output};
+
+use color_eyre::eyre::Result;
+use tracing::debug;
+
+use crate::command::CommandExt;
+use crate::error::DryRun;
 
 /// An enum telling whether Topgrade should perform dry runs or actually perform the steps.
 #[derive(Clone, Copy, Debug)]
@@ -56,6 +58,16 @@ pub enum Executor {
 }
 
 impl Executor {
+    /// Get the name of the program being run.
+    ///
+    /// Will give weird results for non-UTF-8 programs; see `to_string_lossy()`.
+    pub fn get_program(&self) -> String {
+        match self {
+            Executor::Wet(c) => c.get_program().to_string_lossy().into_owned(),
+            Executor::Dry(c) => c.program.to_string_lossy().into_owned(),
+        }
+    }
+
     /// See `std::process::Command::arg`
     pub fn arg<S: AsRef<OsStr>>(&mut self, arg: S) -> &mut Executor {
         match self {
@@ -139,7 +151,7 @@ impl Executor {
         let result = match self {
             Executor::Wet(c) => {
                 debug!("Running {:?}", c);
-                c.spawn().map(ExecutorChild::Wet)?
+                c.spawn_checked().map(ExecutorChild::Wet)?
             }
             Executor::Dry(c) => {
                 c.dry_run();
@@ -153,7 +165,7 @@ impl Executor {
     /// See `std::process::Command::output`
     pub fn output(&mut self) -> Result<ExecutorOutput> {
         match self {
-            Executor::Wet(c) => Ok(ExecutorOutput::Wet(c.output()?)),
+            Executor::Wet(c) => Ok(ExecutorOutput::Wet(c.output_checked()?)),
             Executor::Dry(c) => {
                 c.dry_run();
                 Ok(ExecutorOutput::Dry)
@@ -161,23 +173,28 @@ impl Executor {
         }
     }
 
-    /// A convinence method for `spawn().wait().check()`.
-    /// Returns an error if something went wrong during the execution or if the
-    /// process exited with failure.
-    pub fn check_run(&mut self) -> Result<()> {
-        self.spawn()?.wait()?.check()
-    }
-
-    /// An extension of `check_run` that allows you to set a sequence of codes
+    /// An extension of `status_checked` that allows you to set a sequence of codes
     /// that can indicate success of a script
     #[allow(dead_code)]
-    pub fn check_run_with_codes(&mut self, codes: &[i32]) -> Result<()> {
-        self.spawn()?.wait()?.check_with_codes(codes)
+    pub fn status_checked_with_codes(&mut self, codes: &[i32]) -> Result<()> {
+        match self {
+            Executor::Wet(c) => c.status_checked_with(|status| {
+                if status.success() || status.code().as_ref().map(|c| codes.contains(c)).unwrap_or(false) {
+                    Ok(())
+                } else {
+                    Err(())
+                }
+            }),
+            Executor::Dry(c) => {
+                c.dry_run();
+                Ok(())
+            }
+        }
     }
 }
 
 pub enum ExecutorOutput {
-    Wet(std::process::Output),
+    Wet(Output),
     Dry,
 }
 
@@ -214,78 +231,33 @@ pub enum ExecutorChild {
     Dry,
 }
 
-impl ExecutorChild {
-    /// See `std::process::Child::wait`
-    pub fn wait(&mut self) -> Result<ExecutorExitStatus> {
-        let result = match self {
-            ExecutorChild::Wet(c) => c.wait().map(ExecutorExitStatus::Wet)?,
-            ExecutorChild::Dry => ExecutorExitStatus::Dry,
-        };
-
-        Ok(result)
-    }
-}
-
-/// The Result of wait. Contains an actual `std::process::ExitStatus` if executed by a wet command.
-pub enum ExecutorExitStatus {
-    Wet(ExitStatus),
-    Dry,
-}
-
-impl CheckWithCodes for ExecutorExitStatus {
-    fn check_with_codes(self, codes: &[i32]) -> Result<()> {
-        match self {
-            ExecutorExitStatus::Wet(e) => e.check_with_codes(codes),
-            ExecutorExitStatus::Dry => Ok(()),
-        }
-    }
-}
-
-/// Extension methods for `std::process::Command`
-pub trait CommandExt {
-    /// Run the command, wait for it to complete, check the return code and decode the output as UTF-8.
-    fn check_output(&mut self) -> Result<String>;
-    fn string_output(&mut self) -> Result<String>;
-}
-
-impl CommandExt for Command {
-    fn check_output(&mut self) -> Result<String> {
-        let output = self.output()?;
-        trace!("Output of {:?}: {:?}", self, output);
-        let status = output.status;
-        if !status.success() {
-            let stderr = String::from_utf8(output.stderr).unwrap_or_default();
-            return Err(TopgradeError::ProcessFailedWithOutput(status, stderr).into());
-        }
-        Ok(String::from_utf8(output.stdout)?)
-    }
-
-    fn string_output(&mut self) -> Result<String> {
-        let output = self.output()?;
-        trace!("Output of {:?}: {:?}", self, output);
-        Ok(String::from_utf8(output.stdout)?)
-    }
-}
-
 impl CommandExt for Executor {
-    fn check_output(&mut self) -> Result<String> {
-        let output = match self.output()? {
-            ExecutorOutput::Wet(output) => output,
-            ExecutorOutput::Dry => return Err(DryRun().into()),
-        };
-        let status = output.status;
-        if !status.success() {
-            let stderr = String::from_utf8(output.stderr).unwrap_or_default();
-            return Err(TopgradeError::ProcessFailedWithOutput(status, stderr).into());
+    type Child = ExecutorChild;
+
+    // TODO: It might be nice to make `output_checked_with` return something that has a
+    // variant for wet/dry runs.
+
+    fn output_checked_with(&mut self, succeeded: impl Fn(&Output) -> Result<(), ()>) -> Result<Output> {
+        match self {
+            Executor::Wet(c) => c.output_checked_with(succeeded),
+            Executor::Dry(c) => {
+                c.dry_run();
+                Err(DryRun().into())
+            }
         }
-        Ok(String::from_utf8(output.stdout)?)
     }
 
-    fn string_output(&mut self) -> Result<String> {
-        let output = match self.output()? {
-            ExecutorOutput::Wet(output) => output,
-            ExecutorOutput::Dry => return Err(DryRun().into()),
-        };
-        Ok(String::from_utf8(output.stdout)?)
+    fn status_checked_with(&mut self, succeeded: impl Fn(ExitStatus) -> Result<(), ()>) -> Result<()> {
+        match self {
+            Executor::Wet(c) => c.status_checked_with(succeeded),
+            Executor::Dry(c) => {
+                c.dry_run();
+                Ok(())
+            }
+        }
+    }
+
+    fn spawn_checked(&mut self) -> Result<Self::Child> {
+        self.spawn()
     }
 }

src/main.rs

@@ -2,14 +2,22 @@
 
 use std::env;
 use std::io;
+use std::path::PathBuf;
 use std::process::exit;
+use std::time::Duration;
 
-use anyhow::{anyhow, Result};
+use clap::CommandFactory;
 use clap::{crate_version, Parser};
+use color_eyre::eyre::Context;
+use color_eyre::eyre::Result;
 use console::Key;
-use log::debug;
-use log::LevelFilter;
-use pretty_env_logger::formatted_timed_builder;
+#[cfg(windows)]
+use etcetera::base_strategy::Windows;
+use etcetera::base_strategy::{BaseStrategy, Xdg};
+use once_cell::sync::Lazy;
+use tracing::debug;
+
+use crate::steps::git::GitAction;
 
 use self::config::{CommandLineArgs, Config, Step};
 use self::error::StepFailed;
@@ -18,6 +26,9 @@ use self::error::Upgraded;
 use self::steps::{remote::*, *};
 use self::terminal::*;
 
+use self::utils::{install_color_eyre, install_tracing, update_tracing};
+
+mod command;
 mod config;
 mod ctrlc;
 mod error;
@@ -30,15 +41,44 @@ mod self_renamer;
 #[cfg(feature = "self-update")]
 mod self_update;
 mod steps;
+mod sudo;
 mod terminal;
 mod utils;
 
+pub static HOME_DIR: Lazy<PathBuf> = Lazy::new(|| home::home_dir().expect("No home directory"));
+pub static XDG_DIRS: Lazy<Xdg> = Lazy::new(|| Xdg::new().expect("No home directory"));
+#[cfg(windows)]
+pub static WINDOWS_DIRS: Lazy<Windows> = Lazy::new(|| Windows::new().expect("No home directory"));
+
 fn run() -> Result<()> {
+    install_color_eyre()?;
     ctrlc::set_handler();
 
-    let base_dirs = directories::BaseDirs::new().ok_or_else(|| anyhow!("No base directories"))?;
-
     let opt = CommandLineArgs::parse();
+    // Set up the logger with the filter directives from:
+    //     1. CLI option `--log-filter`
+    //     2. `debug` if the `--verbose` option is present
+    // We do this because we need our logger to work while loading the
+    // configuration file.
+    //
+    // When the configuration file is loaded, update the logger with the full
+    // filter directives.
+    //
+    // For more info, see the comments in `CommandLineArgs::tracing_filter_directives()`
+    // and `Config::tracing_filter_directives()`.
+    let reload_handle = install_tracing(&opt.tracing_filter_directives())?;
+
+    if let Some(shell) = opt.gen_completion {
+        let cmd = &mut CommandLineArgs::command();
+        clap_complete::generate(shell, cmd, clap::crate_name!(), &mut io::stdout());
+        return Ok(());
+    }
+
+    if opt.gen_manpage {
+        let man = clap_mangen::Man::new(CommandLineArgs::command());
+        man.render(&mut io::stdout())?;
+        return Ok(());
+    }
 
     for env in opt.env_variables() {
         let mut splitted = env.split('=');
@@ -47,66 +87,60 @@ fn run() -> Result<()> {
         env::set_var(var, value);
     }
 
-    let mut builder = formatted_timed_builder();
-
-    if opt.verbose {
-        builder.filter(Some("topgrade"), LevelFilter::Trace);
-    }
-
-    builder.init();
-
     if opt.edit_config() {
-        Config::edit(&base_dirs)?;
+        Config::edit()?;
         return Ok(());
     };
 
     if opt.show_config_reference() {
-        print!("{}", crate::config::EXAMPLE_CONFIG);
+        print!("{}", config::EXAMPLE_CONFIG);
         return Ok(());
     }
 
-    let config = Config::load(&base_dirs, opt)?;
-    terminal::set_title(config.set_title());
-    terminal::display_time(config.display_time());
-    terminal::set_desktop_notifications(config.notify_each_step());
+    let config = Config::load(opt)?;
+    // Update the logger with the full filter directives.
+    update_tracing(&reload_handle, &config.tracing_filter_directives())?;
+    set_title(config.set_title());
+    display_time(config.display_time());
+    set_desktop_notifications(config.notify_each_step());
 
     debug!("Version: {}", crate_version!());
     debug!("OS: {}", env!("TARGET"));
     debug!("{:?}", std::env::args());
     debug!("Binary path: {:?}", std::env::current_exe());
-    debug!("Self Update: {:?}", cfg!(feature = "self-update"));
+    debug!("self-update Feature Enabled: {:?}", cfg!(feature = "self-update"));
+    debug!("Configuration: {:?}", config);
 
     if config.run_in_tmux() && env::var("TOPGRADE_INSIDE_TMUX").is_err() {
         #[cfg(unix)]
         {
-            tmux::run_in_tmux(config.tmux_arguments()?);
+            tmux::run_in_tmux(config.tmux_arguments()?)?;
+            return Ok(());
         }
     }
 
     let git = git::Git::new();
     let mut git_repos = git::Repositories::new(&git);
+    let powershell = powershell::Powershell::new();
+    let should_run_powershell = powershell.profile().is_some() && config.should_run(Step::Powershell);
+    let emacs = emacs::Emacs::new();
+    #[cfg(target_os = "linux")]
+    let distribution = linux::Distribution::detect();
 
-    let sudo = utils::sudo();
+    let sudo = config.sudo_command().map_or_else(sudo::Sudo::detect, sudo::Sudo::new);
     let run_type = executor::RunType::new(config.dry_run());
-
-    let ctx = execution_context::ExecutionContext::new(run_type, &sudo, &git, &config, &base_dirs);
-
+    let ctx = execution_context::ExecutionContext::new(run_type, sudo, &git, &config);
     let mut runner = runner::Runner::new(&ctx);
 
+    // Self-Update step, this will execute only if:
+    // 1. the `self-update` feature is enabled
+    // 2. it is not disabled from configuration (env var/CLI opt/file)
     #[cfg(feature = "self-update")]
     {
-        if !run_type.dry() && env::var("TOPGRADE_NO_SELF_UPGRADE").is_err() {
-            let result = self_update::self_update();
+        let should_self_update = env::var("TOPGRADE_NO_SELF_UPGRADE").is_err() && !config.no_self_update();
 
-            if let Err(e) = &result {
-                #[cfg(windows)]
-                {
-                    if e.downcast_ref::<Upgraded>().is_some() {
-                        return result;
-                    }
-                }
-                print_warning(format!("Self update error: {}", e));
-            }
+        if should_self_update {
+            runner.execute(Step::SelfUpdate, "Self Update", || self_update::self_update(&ctx))?;
         }
     }
 
@@ -123,45 +157,65 @@ fn run() -> Result<()> {
         }
     }
 
-    let powershell = powershell::Powershell::new();
-    let should_run_powershell = powershell.profile().is_some() && config.should_run(Step::Powershell);
-
-    #[cfg(windows)]
-    runner.execute(Step::Wsl, "WSL", || windows::run_wsl_topgrade(&ctx))?;
+    if config.pre_sudo() {
+        if let Some(sudo) = ctx.sudo() {
+            sudo.elevate(&ctx)?;
+        }
+    }
 
     if let Some(topgrades) = config.remote_topgrades() {
         for remote_topgrade in topgrades.iter().filter(|t| config.should_execute_remote(t)) {
-            runner.execute(Step::Remotes, format!("Remote ({})", remote_topgrade), || {
-                remote::ssh::ssh_step(&ctx, remote_topgrade)
+            runner.execute(Step::Remotes, format!("Remote ({remote_topgrade})"), || {
+                ssh::ssh_step(&ctx, remote_topgrade)
             })?;
         }
     }
 
-    #[cfg(target_os = "linux")]
-    let distribution = linux::Distribution::detect();
-
-    #[cfg(target_os = r#"linux"#)]
+    #[cfg(windows)]
     {
+        runner.execute(Step::Wsl, "WSL", || windows::run_wsl_topgrade(&ctx))?;
+        runner.execute(Step::WslUpdate, "WSL", || windows::update_wsl(&ctx))?;
+        runner.execute(Step::Chocolatey, "Chocolatey", || windows::run_chocolatey(&ctx))?;
+        runner.execute(Step::Scoop, "Scoop", || windows::run_scoop(&ctx))?;
+        runner.execute(Step::Winget, "Winget", || windows::run_winget(&ctx))?;
+        runner.execute(Step::System, "Windows update", || windows::windows_update(&ctx))?;
+    }
+
+    #[cfg(target_os = "linux")]
+    {
+        // NOTE: Due to breaking `nu` updates, `packer.nu` needs to be updated before `nu` get updated
+        // by other package managers.
+        runner.execute(Step::Shell, "packer.nu", || linux::run_packer_nu(&ctx))?;
+
         match &distribution {
             Ok(distribution) => {
                 runner.execute(Step::System, "System update", || distribution.upgrade(&ctx))?;
             }
             Err(e) => {
-                println!("Error detecting current distribution: {}", e);
+                println!("Error detecting current distribution: {e}");
             }
         }
         runner.execute(Step::ConfigUpdate, "config-update", || linux::run_config_update(&ctx))?;
 
+        runner.execute(Step::AM, "am", || linux::run_am(&ctx))?;
+        runner.execute(Step::AppMan, "appman", || linux::run_appman(&ctx))?;
+        runner.execute(Step::DebGet, "deb-get", || linux::run_deb_get(&ctx))?;
+        runner.execute(Step::Toolbx, "toolbx", || toolbx::run_toolbx(&ctx))?;
+        runner.execute(Step::Snap, "snap", || linux::run_snap(&ctx))?;
+        runner.execute(Step::Pacstall, "pacstall", || linux::run_pacstall(&ctx))?;
+        runner.execute(Step::Pacdef, "pacdef", || linux::run_pacdef(&ctx))?;
+        runner.execute(Step::Protonup, "protonup", || linux::run_protonup_update(&ctx))?;
+        runner.execute(Step::Distrobox, "distrobox", || linux::run_distrobox_update(&ctx))?;
+        runner.execute(Step::DkpPacman, "dkp-pacman", || linux::run_dkp_pacman_update(&ctx))?;
+        runner.execute(Step::System, "pihole", || linux::run_pihole_update(&ctx))?;
+        runner.execute(Step::Firmware, "Firmware upgrades", || linux::run_fwupdmgr(&ctx))?;
+        runner.execute(Step::Restarts, "Restarts", || linux::run_needrestart(&ctx))?;
+
+        runner.execute(Step::Flatpak, "Flatpak", || linux::run_flatpak(&ctx))?;
         runner.execute(Step::BrewFormula, "Brew", || {
             unix::run_brew_formula(&ctx, unix::BrewVariant::Path)
         })?;
-    }
-
-    #[cfg(windows)]
-    {
-        runner.execute(Step::Chocolatey, "Chocolatey", || windows::run_chocolatey(&ctx))?;
-        runner.execute(Step::Scoop, "Scoop", || windows::run_scoop(config.cleanup(), run_type))?;
-        runner.execute(Step::Winget, "Winget", || windows::run_winget(&ctx))?;
+        runner.execute(Step::Lure, "LURE", || linux::run_lure_update(&ctx))?;
     }
 
     #[cfg(target_os = "macos")]
@@ -185,6 +239,35 @@ fn run() -> Result<()> {
             unix::run_brew_cask(&ctx, unix::BrewVariant::Path)
         })?;
         runner.execute(Step::Macports, "MacPorts", || macos::run_macports(&ctx))?;
+        runner.execute(Step::Sparkle, "Sparkle", || macos::run_sparkle(&ctx))?;
+        runner.execute(Step::Mas, "App Store", || macos::run_mas(&ctx))?;
+        runner.execute(Step::System, "System upgrade", || macos::upgrade_macos(&ctx))?;
+    }
+
+    #[cfg(target_os = "dragonfly")]
+    {
+        runner.execute(Step::Pkg, "DragonFly BSD Packages", || {
+            dragonfly::upgrade_packages(&ctx)
+        })?;
+        dragonfly::audit_packages(&ctx)?;
+    }
+
+    #[cfg(target_os = "freebsd")]
+    {
+        runner.execute(Step::Pkg, "FreeBSD Packages", || freebsd::upgrade_packages(&ctx))?;
+        runner.execute(Step::System, "FreeBSD Upgrade", || freebsd::upgrade_freebsd(&ctx))?;
+        freebsd::audit_packages(&ctx)?;
+    }
+
+    #[cfg(target_os = "openbsd")]
+    {
+        runner.execute(Step::Pkg, "OpenBSD Packages", || openbsd::upgrade_packages(&ctx))?;
+        runner.execute(Step::System, "OpenBSD Upgrade", || openbsd::upgrade_openbsd(&ctx))?;
+    }
+
+    #[cfg(target_os = "android")]
+    {
+        runner.execute(Step::Pkg, "Termux Packages", || android::upgrade_packages(&ctx))?;
     }
 
     #[cfg(unix)]
@@ -192,126 +275,36 @@ fn run() -> Result<()> {
         runner.execute(Step::Yadm, "yadm", || unix::run_yadm(&ctx))?;
         runner.execute(Step::Nix, "nix", || unix::run_nix(&ctx))?;
         runner.execute(Step::Guix, "guix", || unix::run_guix(&ctx))?;
-
-        runner.execute(Step::HomeManager, "home-manager", || unix::run_home_manager(run_type))?;
-        runner.execute(Step::Asdf, "asdf", || unix::run_asdf(run_type))?;
+        runner.execute(Step::HomeManager, "home-manager", || unix::run_home_manager(&ctx))?;
+        runner.execute(Step::Asdf, "asdf", || unix::run_asdf(&ctx))?;
         runner.execute(Step::Pkgin, "pkgin", || unix::run_pkgin(&ctx))?;
         runner.execute(Step::Bun, "bun", || unix::run_bun(&ctx))?;
-    }
-
-    #[cfg(target_os = "dragonfly")]
-    runner.execute(Step::Pkg, "DragonFly BSD Packages", || {
-        dragonfly::upgrade_packages(sudo.as_ref(), run_type)
-    })?;
-
-    #[cfg(target_os = "freebsd")]
-    runner.execute(Step::Pkg, "FreeBSD Packages", || {
-        freebsd::upgrade_packages(sudo.as_ref(), run_type)
-    })?;
-
-    #[cfg(target_os = "openbsd")]
-    runner.execute(Step::Pkg, "OpenBSD Packages", || {
-        openbsd::upgrade_packages(sudo.as_ref(), run_type)
-    })?;
-
-    #[cfg(target_os = "android")]
-    runner.execute(Step::Pkg, "Termux Packages", || android::upgrade_packages(&ctx))?;
-
-    let emacs = emacs::Emacs::new(&base_dirs);
-    if config.use_predefined_git_repos() {
-        if config.should_run(Step::Emacs) {
-            if !emacs.is_doom() {
-                if let Some(directory) = emacs.directory() {
-                    git_repos.insert_if_repo(directory);
-                }
-            }
-            git_repos.insert_if_repo(base_dirs.home_dir().join(".doom.d"));
-        }
-
-        if config.should_run(Step::Vim) {
-            git_repos.insert_if_repo(base_dirs.home_dir().join(".vim"));
-            git_repos.insert_if_repo(base_dirs.home_dir().join(".config/nvim"));
-        }
-
-        git_repos.insert_if_repo(base_dirs.home_dir().join(".ideavimrc"));
-        git_repos.insert_if_repo(base_dirs.home_dir().join(".intellimacs"));
-
-        if config.should_run(Step::Rcm) {
-            git_repos.insert_if_repo(base_dirs.home_dir().join(".dotfiles"));
-        }
-
-        #[cfg(unix)]
-        {
-            git_repos.insert_if_repo(zsh::zshrc(&base_dirs));
-            if config.should_run(Step::Tmux) {
-                git_repos.insert_if_repo(base_dirs.home_dir().join(".tmux"));
-            }
-            git_repos.insert_if_repo(base_dirs.home_dir().join(".config/fish"));
-            git_repos.insert_if_repo(base_dirs.config_dir().join("openbox"));
-            git_repos.insert_if_repo(base_dirs.config_dir().join("bspwm"));
-            git_repos.insert_if_repo(base_dirs.config_dir().join("i3"));
-            git_repos.insert_if_repo(base_dirs.config_dir().join("sway"));
-        }
-
-        #[cfg(windows)]
-        git_repos.insert_if_repo(
-            base_dirs
-                .data_local_dir()
-                .join("Packages/Microsoft.WindowsTerminal_8wekyb3d8bbwe/LocalState"),
-        );
-
-        #[cfg(windows)]
-        windows::insert_startup_scripts(&ctx, &mut git_repos).ok();
-
-        if let Some(profile) = powershell.profile() {
-            git_repos.insert_if_repo(profile);
-        }
-    }
-
-    if config.should_run(Step::GitRepos) {
-        if let Some(custom_git_repos) = config.git_repos() {
-            for git_repo in custom_git_repos {
-                git_repos.glob_insert(git_repo);
-            }
-        }
-        runner.execute(Step::GitRepos, "Git repositories", || {
-            git.multi_pull_step(&git_repos, &ctx)
-        })?;
-    }
-
-    if should_run_powershell {
-        runner.execute(Step::Powershell, "Powershell Modules Update", || {
-            powershell.update_modules(&ctx)
-        })?;
-    }
-
-    #[cfg(unix)]
-    {
-        runner.execute(Step::Shell, "zr", || zsh::run_zr(&base_dirs, run_type))?;
-        runner.execute(Step::Shell, "antibody", || zsh::run_antibody(run_type))?;
-        runner.execute(Step::Shell, "antigen", || zsh::run_antigen(&base_dirs, run_type))?;
-        runner.execute(Step::Shell, "zgenom", || zsh::run_zgenom(&base_dirs, run_type))?;
-        runner.execute(Step::Shell, "zplug", || zsh::run_zplug(&base_dirs, run_type))?;
-        runner.execute(Step::Shell, "zinit", || zsh::run_zinit(&base_dirs, run_type))?;
-        runner.execute(Step::Shell, "zi", || zsh::run_zi(&base_dirs, run_type))?;
-        runner.execute(Step::Shell, "zim", || zsh::run_zim(&base_dirs, run_type))?;
+        runner.execute(Step::Shell, "zr", || zsh::run_zr(&ctx))?;
+        runner.execute(Step::Shell, "antibody", || zsh::run_antibody(&ctx))?;
+        runner.execute(Step::Shell, "antidote", || zsh::run_antidote(&ctx))?;
+        runner.execute(Step::Shell, "antigen", || zsh::run_antigen(&ctx))?;
+        runner.execute(Step::Shell, "zgenom", || zsh::run_zgenom(&ctx))?;
+        runner.execute(Step::Shell, "zplug", || zsh::run_zplug(&ctx))?;
+        runner.execute(Step::Shell, "zinit", || zsh::run_zinit(&ctx))?;
+        runner.execute(Step::Shell, "zi", || zsh::run_zi(&ctx))?;
+        runner.execute(Step::Shell, "zim", || zsh::run_zim(&ctx))?;
         runner.execute(Step::Shell, "oh-my-zsh", || zsh::run_oh_my_zsh(&ctx))?;
-        runner.execute(Step::Shell, "fisher", || unix::run_fisher(&base_dirs, run_type))?;
+        runner.execute(Step::Shell, "oh-my-bash", || unix::run_oh_my_bash(&ctx))?;
+        runner.execute(Step::Shell, "fisher", || unix::run_fisher(&ctx))?;
         runner.execute(Step::Shell, "bash-it", || unix::run_bashit(&ctx))?;
         runner.execute(Step::Shell, "oh-my-fish", || unix::run_oh_my_fish(&ctx))?;
         runner.execute(Step::Shell, "fish-plug", || unix::run_fish_plug(&ctx))?;
         runner.execute(Step::Shell, "fundle", || unix::run_fundle(&ctx))?;
-        runner.execute(Step::Tmux, "tmux", || tmux::run_tpm(&base_dirs, run_type))?;
-        runner.execute(Step::Tldr, "TLDR", || unix::run_tldr(run_type))?;
-        runner.execute(Step::Pearl, "pearl", || unix::run_pearl(run_type))?;
+        runner.execute(Step::Tmux, "tmux", || tmux::run_tpm(&ctx))?;
+        runner.execute(Step::Tldr, "TLDR", || unix::run_tldr(&ctx))?;
+        runner.execute(Step::Pearl, "pearl", || unix::run_pearl(&ctx))?;
         #[cfg(not(any(target_os = "macos", target_os = "android")))]
         runner.execute(Step::GnomeShellExtensions, "Gnome Shell Extensions", || {
             unix::upgrade_gnome_extensions(&ctx)
         })?;
-        runner.execute(Step::Sdkman, "SDKMAN!", || {
-            unix::run_sdkman(&base_dirs, config.cleanup(), run_type)
-        })?;
+        runner.execute(Step::Sdkman, "SDKMAN!", || unix::run_sdkman(&ctx))?;
         runner.execute(Step::Rcm, "rcm", || unix::run_rcm(&ctx))?;
+        runner.execute(Step::Maza, "maza", || unix::run_maza(&ctx))?;
     }
 
     #[cfg(not(any(
@@ -320,68 +313,153 @@ fn run() -> Result<()> {
         target_os = "netbsd",
         target_os = "dragonfly"
     )))]
-    runner.execute(Step::Atom, "apm", || generic::run_apm(run_type))?;
-    runner.execute(Step::Fossil, "fossil", || generic::run_fossil(run_type))?;
-    runner.execute(Step::Rustup, "rustup", || generic::run_rustup(&base_dirs, run_type))?;
+    {
+        runner.execute(Step::Atom, "apm", || generic::run_apm(&ctx))?;
+    }
+
+    // The following update function should be executed on all OSes.
+    runner.execute(Step::Fossil, "fossil", || generic::run_fossil(&ctx))?;
+    runner.execute(Step::Rustup, "rustup", || generic::run_rustup(&ctx))?;
+    runner.execute(Step::Juliaup, "juliaup", || generic::run_juliaup(&ctx))?;
     runner.execute(Step::Dotnet, ".NET", || generic::run_dotnet_upgrade(&ctx))?;
     runner.execute(Step::Choosenim, "choosenim", || generic::run_choosenim(&ctx))?;
     runner.execute(Step::Cargo, "cargo", || generic::run_cargo_update(&ctx))?;
-    runner.execute(Step::Flutter, "Flutter", || generic::run_flutter_upgrade(run_type))?;
-    runner.execute(Step::Go, "Go", || generic::run_go(run_type))?;
+    runner.execute(Step::Flutter, "Flutter", || generic::run_flutter_upgrade(&ctx))?;
+    runner.execute(Step::Go, "go-global-update", || go::run_go_global_update(&ctx))?;
+    runner.execute(Step::Go, "gup", || go::run_go_gup(&ctx))?;
     runner.execute(Step::Emacs, "Emacs", || emacs.upgrade(&ctx))?;
     runner.execute(Step::Opam, "opam", || generic::run_opam_update(&ctx))?;
-    runner.execute(Step::Vcpkg, "vcpkg", || generic::run_vcpkg_update(run_type))?;
-    runner.execute(Step::Pipx, "pipx", || generic::run_pipx_update(run_type))?;
+    runner.execute(Step::Vcpkg, "vcpkg", || generic::run_vcpkg_update(&ctx))?;
+    runner.execute(Step::Pipx, "pipx", || generic::run_pipx_update(&ctx))?;
+    runner.execute(Step::Vscode, "Visual Studio Code extensions", || {
+        generic::run_vscode_extensions_upgrade(&ctx)
+    })?;
     runner.execute(Step::Conda, "conda", || generic::run_conda_update(&ctx))?;
-    runner.execute(Step::Pip3, "pip3", || generic::run_pip3_update(run_type))?;
-    runner.execute(Step::Ghcup, "ghcup", || generic::run_ghcup_update(run_type))?;
-    runner.execute(Step::Stack, "stack", || generic::run_stack_update(run_type))?;
+    runner.execute(Step::Mamba, "mamba", || generic::run_mamba_update(&ctx))?;
+    runner.execute(Step::Miktex, "miktex", || generic::run_miktex_packages_update(&ctx))?;
+    runner.execute(Step::Pip3, "pip3", || generic::run_pip3_update(&ctx))?;
+    runner.execute(Step::PipReview, "pip-review", || generic::run_pip_review_update(&ctx))?;
+    runner.execute(Step::PipReviewLocal, "pip-review (local)", || {
+        generic::run_pip_review_local_update(&ctx)
+    })?;
+    runner.execute(Step::Pipupgrade, "pipupgrade", || generic::run_pipupgrade_update(&ctx))?;
+    runner.execute(Step::Ghcup, "ghcup", || generic::run_ghcup_update(&ctx))?;
+    runner.execute(Step::Stack, "stack", || generic::run_stack_update(&ctx))?;
     runner.execute(Step::Tlmgr, "tlmgr", || generic::run_tlmgr_update(&ctx))?;
-    runner.execute(Step::Myrepos, "myrepos", || {
-        generic::run_myrepos_update(&base_dirs, run_type)
-    })?;
-    runner.execute(Step::Chezmoi, "chezmoi", || {
-        generic::run_chezmoi_update(&base_dirs, run_type)
-    })?;
-    runner.execute(Step::Jetpack, "jetpack", || generic::run_jetpack(run_type))?;
-    runner.execute(Step::Vim, "vim", || vim::upgrade_vim(&base_dirs, &ctx))?;
-    runner.execute(Step::Vim, "Neovim", || vim::upgrade_neovim(&base_dirs, &ctx))?;
+    runner.execute(Step::Myrepos, "myrepos", || generic::run_myrepos_update(&ctx))?;
+    runner.execute(Step::Chezmoi, "chezmoi", || generic::run_chezmoi_update(&ctx))?;
+    runner.execute(Step::Jetpack, "jetpack", || generic::run_jetpack(&ctx))?;
+    runner.execute(Step::Vim, "vim", || vim::upgrade_vim(&ctx))?;
+    runner.execute(Step::Vim, "Neovim", || vim::upgrade_neovim(&ctx))?;
     runner.execute(Step::Vim, "The Ultimate vimrc", || vim::upgrade_ultimate_vimrc(&ctx))?;
-    runner.execute(Step::Vim, "voom", || vim::run_voom(&base_dirs, run_type))?;
+    runner.execute(Step::Vim, "voom", || vim::run_voom(&ctx))?;
     runner.execute(Step::Kakoune, "Kakoune", || kakoune::upgrade_kak_plug(&ctx))?;
+    runner.execute(Step::Helix, "helix", || generic::run_helix_grammars(&ctx))?;
     runner.execute(Step::Node, "npm", || node::run_npm_upgrade(&ctx))?;
-    runner.execute(Step::Node, "yarn", || node::run_yarn_upgrade(&ctx))?;
-    runner.execute(Step::Node, "pnpm", || node::run_pnpm_upgrade(&ctx))?;
+    runner.execute(Step::Yarn, "yarn", || node::run_yarn_upgrade(&ctx))?;
+    runner.execute(Step::Pnpm, "pnpm", || node::run_pnpm_upgrade(&ctx))?;
     runner.execute(Step::Containers, "Containers", || containers::run_containers(&ctx))?;
     runner.execute(Step::Deno, "deno", || node::deno_upgrade(&ctx))?;
     runner.execute(Step::Composer, "composer", || generic::run_composer_update(&ctx))?;
-    runner.execute(Step::Krew, "krew", || generic::run_krew_upgrade(run_type))?;
-    runner.execute(Step::Gem, "gem", || generic::run_gem(&base_dirs, run_type))?;
+    runner.execute(Step::Krew, "krew", || generic::run_krew_upgrade(&ctx))?;
+    runner.execute(Step::Helm, "helm", || generic::run_helm_repo_update(&ctx))?;
+    runner.execute(Step::Gem, "gem", || generic::run_gem(&ctx))?;
+    runner.execute(Step::RubyGems, "rubygems", || generic::run_rubygems(&ctx))?;
     runner.execute(Step::Julia, "julia", || generic::update_julia_packages(&ctx))?;
     runner.execute(Step::Haxelib, "haxelib", || generic::run_haxelib_update(&ctx))?;
     runner.execute(Step::Sheldon, "sheldon", || generic::run_sheldon(&ctx))?;
+    runner.execute(Step::Stew, "stew", || generic::run_stew(&ctx))?;
     runner.execute(Step::Rtcl, "rtcl", || generic::run_rtcl(&ctx))?;
     runner.execute(Step::Bin, "bin", || generic::bin_update(&ctx))?;
-    runner.execute(Step::Gcloud, "gcloud", || {
-        generic::run_gcloud_components_update(run_type)
-    })?;
-    runner.execute(Step::Micro, "micro", || generic::run_micro(run_type))?;
-    runner.execute(Step::Raco, "raco", || generic::run_raco_update(run_type))?;
+    runner.execute(Step::Gcloud, "gcloud", || generic::run_gcloud_components_update(&ctx))?;
+    runner.execute(Step::Micro, "micro", || generic::run_micro(&ctx))?;
+    runner.execute(Step::Raco, "raco", || generic::run_raco_update(&ctx))?;
     runner.execute(Step::Spicetify, "spicetify", || generic::spicetify_upgrade(&ctx))?;
     runner.execute(Step::GithubCliExtensions, "GitHub CLI Extensions", || {
         generic::run_ghcli_extensions_upgrade(&ctx)
     })?;
+    runner.execute(Step::Bob, "Bob", || generic::run_bob(&ctx))?;
 
-    #[cfg(target_os = "linux")]
+    if config.use_predefined_git_repos() {
+        if config.should_run(Step::Emacs) {
+            if !emacs.is_doom() {
+                if let Some(directory) = emacs.directory() {
+                    git_repos.insert_if_repo(directory, GitAction::Pull);
+                }
+            }
+            git_repos.insert_if_repo(HOME_DIR.join(".doom.d"), GitAction::Pull);
+        }
+
+        if config.should_run(Step::Vim) {
+            git_repos.insert_if_repo(HOME_DIR.join(".vim"), GitAction::Pull);
+            git_repos.insert_if_repo(HOME_DIR.join(".config/nvim"), GitAction::Pull);
+        }
+
+        git_repos.insert_if_repo(HOME_DIR.join(".ideavimrc"), GitAction::Pull);
+        git_repos.insert_if_repo(HOME_DIR.join(".intellimacs"), GitAction::Pull);
+
+        if config.should_run(Step::Rcm) {
+            git_repos.insert_if_repo(HOME_DIR.join(".dotfiles"), GitAction::Pull);
+        }
+
+        #[cfg(unix)]
         {
-        runner.execute(Step::DebGet, "deb-get", || linux::run_deb_get(&ctx))?;
-        runner.execute(Step::Toolbx, "toolbx", || toolbx::run_toolbx(&ctx))?;
-        runner.execute(Step::Flatpak, "Flatpak", || linux::flatpak_update(&ctx))?;
-        runner.execute(Step::Snap, "snap", || linux::run_snap(sudo.as_ref(), run_type))?;
-        runner.execute(Step::Pacstall, "pacstall", || linux::run_pacstall(&ctx))?;
-        runner.execute(Step::Pacdef, "pacdef", || linux::run_pacdef(&ctx))?;
-        runner.execute(Step::Protonup, "protonup", || linux::run_protonup_update(&ctx))?;
-        runner.execute(Step::Distrobox, "distrobox", || linux::run_distrobox_update(&ctx))?;
+            git_repos.insert_if_repo(zsh::zshrc(), GitAction::Pull);
+            if config.should_run(Step::Tmux) {
+                git_repos.insert_if_repo(HOME_DIR.join(".tmux"), GitAction::Pull);
+            }
+            git_repos.insert_if_repo(HOME_DIR.join(".config/fish"), GitAction::Pull);
+            git_repos.insert_if_repo(XDG_DIRS.config_dir().join("openbox"), GitAction::Pull);
+            git_repos.insert_if_repo(XDG_DIRS.config_dir().join("bspwm"), GitAction::Pull);
+            git_repos.insert_if_repo(XDG_DIRS.config_dir().join("i3"), GitAction::Pull);
+            git_repos.insert_if_repo(XDG_DIRS.config_dir().join("sway"), GitAction::Pull);
+        }
+
+        #[cfg(windows)]
+        git_repos.insert_if_repo(
+            WINDOWS_DIRS
+                .cache_dir()
+                .join("Packages/Microsoft.WindowsTerminal_8wekyb3d8bbwe/LocalState"),
+            GitAction::Pull,
+        );
+
+        #[cfg(windows)]
+        windows::insert_startup_scripts(&mut git_repos).ok();
+
+        if let Some(profile) = powershell.profile() {
+            git_repos.insert_if_repo(profile, GitAction::Pull);
+        }
+    }
+
+    if config.should_run(Step::GitRepos) {
+        if let Some(custom_git_repos) = config.git_repos() {
+            for git_repo in custom_git_repos {
+                git_repos.glob_insert(git_repo, GitAction::Pull);
+                git_repos.glob_insert(git_repo, GitAction::Push);
+            }
+        }
+
+        if let Some(git_pull_only_repos) = config.git_pull_only_repos() {
+            for git_repo in git_pull_only_repos {
+                git_repos.glob_insert(git_repo, GitAction::Pull);
+            }
+        }
+
+        if let Some(git_push_only_repos) = config.git_push_only_repos() {
+            for git_repo in git_push_only_repos {
+                git_repos.glob_insert(git_repo, GitAction::Push);
+            }
+        }
+
+        runner.execute(Step::GitRepos, "Git repositories", || {
+            git.multi_repo_step(&git_repos, &ctx)
+        })?;
+    }
+
+    if should_run_powershell {
+        runner.execute(Step::Powershell, "Powershell Modules Update", || {
+            powershell.update_modules(&ctx)
+        })?;
     }
 
     if let Some(commands) = config.commands() {
@@ -394,37 +472,6 @@ fn run() -> Result<()> {
         }
     }
 
-    #[cfg(target_os = "linux")]
-    {
-        runner.execute(Step::System, "pihole", || {
-            linux::run_pihole_update(sudo.as_ref(), run_type)
-        })?;
-        runner.execute(Step::Firmware, "Firmware upgrades", || linux::run_fwupdmgr(&ctx))?;
-        runner.execute(Step::Restarts, "Restarts", || {
-            linux::run_needrestart(sudo.as_ref(), run_type)
-        })?;
-    }
-
-    #[cfg(target_os = "macos")]
-    {
-        runner.execute(Step::Sparkle, "Sparkle", || macos::run_sparkle(&ctx))?;
-        runner.execute(Step::Mas, "App Store", || macos::run_mas(run_type))?;
-        runner.execute(Step::System, "System upgrade", || macos::upgrade_macos(&ctx))?;
-    }
-
-    #[cfg(target_os = "freebsd")]
-    runner.execute(Step::System, "FreeBSD Upgrade", || {
-        freebsd::upgrade_freebsd(sudo.as_ref(), run_type)
-    })?;
-
-    #[cfg(target_os = "openbsd")]
-    runner.execute(Step::System, "OpenBSD Upgrade", || {
-        openbsd::upgrade_openbsd(sudo.as_ref(), run_type)
-    })?;
-
-    #[cfg(windows)]
-    runner.execute(Step::System, "Windows update", || windows::windows_update(&ctx))?;
-
     if config.should_run(Step::Vagrant) {
         if let Ok(boxes) = vagrant::collect_boxes(&ctx) {
             for vagrant_box in boxes {
@@ -449,12 +496,6 @@ fn run() -> Result<()> {
                 distribution.show_summary();
             }
         }
-
-        #[cfg(target_os = "freebsd")]
-        freebsd::audit_packages(&sudo).ok();
-
-        #[cfg(target_os = "dragonfly")]
-        dragonfly::audit_packages(&sudo).ok();
     }
 
     let mut post_command_failed = false;
@@ -471,10 +512,10 @@ fn run() -> Result<()> {
         loop {
             match get_key() {
                 Ok(Key::Char('s')) | Ok(Key::Char('S')) => {
-                    run_shell();
+                    run_shell().context("Failed to execute shell")?;
                 }
                 Ok(Key::Char('r')) | Ok(Key::Char('R')) => {
-                    reboot();
+                    reboot().context("Failed to reboot")?;
                 }
                 Ok(Key::Char('q')) | Ok(Key::Char('Q')) => (),
                 _ => {
@@ -488,13 +529,13 @@ fn run() -> Result<()> {
     let failed = post_command_failed || runner.report().data().iter().any(|(_, result)| result.failed());
 
     if !config.skip_notify() {
-        terminal::notify_desktop(
+        notify_desktop(
             format!(
                 "Topgrade finished {}",
                 if failed { "with errors" } else { "successfully" }
             ),
-            None,
-        );
+            Some(Duration::from_secs(10)),
+        )
     }
 
     if failed {
@@ -524,10 +565,10 @@ fn main() {
                     .is_some());
 
             if !skip_print {
-                // The `Debug` implementation of `anyhow::Result` prints a multi-line
+                // The `Debug` implementation of `eyre::Result` prints a multi-line
                 // error message that includes all the 'causes' added with
                 // `.with_context(...)` calls.
-                println!("Error: {:?}", error);
+                println!("Error: {error:?}");
             }
             exit(1);
         }

src/report.rs

@@ -34,7 +34,7 @@ impl<'a> Report<'a> {
         if let Some((key, success)) = result {
             let key = key.into();
 
-            debug_assert!(!self.data.iter().any(|(k, _)| k == &key), "{} already reported", key);
+            debug_assert!(!self.data.iter().any(|(k, _)| k == &key), "{key} already reported");
             self.data.push((key, success));
         }
     }

src/runner.rs

@@ -2,11 +2,12 @@ use crate::ctrlc;
 use crate::error::{DryRun, SkipStep};
 use crate::execution_context::ExecutionContext;
 use crate::report::{Report, StepResult};
+use crate::terminal::print_error;
 use crate::{config::Step, terminal::should_retry};
-use anyhow::Result;
-use log::debug;
+use color_eyre::eyre::Result;
 use std::borrow::Cow;
 use std::fmt::Debug;
+use tracing::debug;
 
 pub struct Runner<'a> {
     ctx: &'a ExecutionContext<'a>,
@@ -55,7 +56,12 @@ impl<'a> Runner<'a> {
 
                     let ignore_failure = self.ctx.config().ignore_failure(step);
                     let should_ask = interrupted || !(self.ctx.config().no_retry() || ignore_failure);
-                    let should_retry = should_ask && should_retry(interrupted, key.as_ref())?;
+                    let should_retry = if should_ask {
+                        print_error(&key, format!("{e:?}"));
+                        should_retry(interrupted, key.as_ref())?
+                    } else {
+                        false
+                    };
 
                     if !should_retry {
                         self.report.push_result(Some((

src/self_renamer.rs

@@ -1,8 +1,8 @@
 #![cfg(windows)]
 
-use anyhow::Result;
-use log::{debug, error};
+use color_eyre::eyre::Result;
 use std::{env::current_exe, fs, path::PathBuf};
+use tracing::{debug, error};
 
 pub struct SelfRenamer {
     exe_path: PathBuf,

src/self_update.rs

@@ -1,16 +1,27 @@
+use std::env;
+#[cfg(unix)]
+use std::os::unix::process::CommandExt as _;
+use std::process::Command;
+
+use crate::config::Step;
+use color_eyre::eyre::{bail, Result};
+use self_update_crate::backends::github::Update;
+use self_update_crate::update::UpdateStatus;
+
 use super::terminal::*;
 #[cfg(windows)]
 use crate::error::Upgraded;
-use anyhow::{bail, Result};
-use self_update_crate::backends::github::Update;
-use self_update_crate::update::UpdateStatus;
-use std::env;
-#[cfg(unix)]
-use std::os::unix::process::CommandExt;
-use std::process::Command;
 
-pub fn self_update() -> Result<()> {
+use crate::execution_context::ExecutionContext;
+
+pub fn self_update(ctx: &ExecutionContext) -> Result<()> {
     print_separator("Self update");
+
+    if ctx.run_type().dry() {
+        println!("Would self-update");
+        Ok(())
+    } else {
+        let assume_yes = ctx.config().yes(Step::SelfUpdate);
         let current_exe = env::current_exe();
 
         let target = self_update_crate::get_target();
@@ -18,22 +29,18 @@ pub fn self_update() -> Result<()> {
             .repo_owner("topgrade-rs")
             .repo_name("topgrade")
             .target(target)
-        .bin_name(if cfg!(windows) {
-            "topgrade-rs.exe"
-        } else {
-            "topgrade-rs"
-        })
-        .show_output(false)
+            .bin_name(if cfg!(windows) { "topgrade.exe" } else { "topgrade" })
+            .show_output(true)
             .show_download_progress(true)
             .current_version(self_update_crate::cargo_crate_version!())
-        .no_confirm(true)
+            .no_confirm(assume_yes)
             .build()?
             .update_extended()?;
 
         if let UpdateStatus::Updated(release) = &result {
             println!("\nTopgrade upgraded to {}:\n", release.version);
             if let Some(body) = &release.body {
-            println!("{}", body);
+                println!("{body}");
             }
         } else {
             println!("Topgrade is up-to-date");
@@ -41,7 +48,7 @@ pub fn self_update() -> Result<()> {
 
         {
             if result.updated() {
-            print_warning("Respawning...");
+                print_info("Respawning...");
                 let mut command = Command::new(current_exe?);
                 command.args(env::args().skip(1)).env("TOPGRADE_NO_SELF_UPGRADE", "");
 
@@ -53,11 +60,13 @@ pub fn self_update() -> Result<()> {
 
                 #[cfg(windows)]
                 {
-                let status = command.spawn().and_then(|mut c| c.wait())?;
+                    #[allow(clippy::disallowed_methods)]
+                    let status = command.status()?;
                     bail!(Upgraded(status));
                 }
             }
         }
 
         Ok(())
+    }
 }

src/steps/containers.rs

@@ -1,13 +1,17 @@
-use anyhow::Result;
-
-use crate::error::{self, TopgradeError};
-use crate::executor::CommandExt;
-use crate::terminal::print_separator;
-use crate::{execution_context::ExecutionContext, utils::require};
-use log::{debug, error, warn};
+use std::fmt::{Display, Formatter};
 use std::path::Path;
 use std::process::Command;
 
+use color_eyre::eyre::eyre;
+use color_eyre::eyre::Context;
+use color_eyre::eyre::Result;
+use tracing::{debug, error, warn};
+
+use crate::command::CommandExt;
+use crate::error::{self, TopgradeError};
+use crate::terminal::print_separator;
+use crate::{execution_context::ExecutionContext, utils::require};
+
 // A string found in the output of docker for containers that weren't found in
 // the docker registry. We use this to gracefully handle and skip containers
 // that cannot be pulled, likely because they don't exist in the registry in
@@ -15,20 +19,46 @@ use std::process::Command;
 // themselves or when using docker-compose.
 const NONEXISTENT_REPO: &str = "repository does not exist";
 
+/// Uniquely identifies a `Container`.
+#[derive(Debug)]
+struct Container {
+    /// `Repository` and `Tag`
+    ///
+    /// format: `Repository:Tag`, e.g., `nixos/nix:latest`.
+    repo_tag: String,
+    /// Platform
+    ///
+    /// format: `OS/Architecture`, e.g., `linux/amd64`.
+    platform: String,
+}
+
+impl Container {
+    /// Construct a new `Container`.
+    fn new(repo_tag: String, platform: String) -> Self {
+        Self { repo_tag, platform }
+    }
+}
+
+impl Display for Container {
+    fn fmt(&self, f: &mut Formatter<'_>) -> std::fmt::Result {
+        // e.g., "`fedora:latest` for `linux/amd64`"
+        write!(f, "`{}` for `{}`", self.repo_tag, self.platform)
+    }
+}
+
 /// Returns a Vector of all containers, with Strings in the format
 /// "REGISTRY/[PATH/]CONTAINER_NAME:TAG"
-fn list_containers(crt: &Path) -> Result<Vec<String>> {
+fn list_containers(crt: &Path) -> Result<Vec<Container>> {
     debug!(
-        "Querying '{} image ls --format \"{{{{.Repository}}}}:{{{{.Tag}}}}\"' for containers",
+        "Querying '{} image ls --format \"{{{{.Repository}}}}:{{{{.Tag}}}}/{{{{.ID}}}}\"' for containers",
         crt.display()
     );
     let output = Command::new(crt)
-        .args(["image", "ls", "--format", "{{.Repository}}:{{.Tag}}"])
-        .output()?;
-    let output_str = String::from_utf8(output.stdout)?;
+        .args(["image", "ls", "--format", "{{.Repository}}:{{.Tag}} {{.ID}}"])
+        .output_checked_with_utf8(|_| Ok(()))?;
 
     let mut retval = vec![];
-    for line in output_str.lines() {
+    for line in output.stdout.lines() {
         if line.starts_with("localhost") {
             // Don't know how to update self-built containers
             debug!("Skipping self-built container '{}'", line);
@@ -47,7 +77,26 @@ fn list_containers(crt: &Path) -> Result<Vec<String>> {
         }
 
         debug!("Using container '{}'", line);
-        retval.push(String::from(line));
+
+        // line is of format: `Repository:Tag ImageID`, e.g., `nixos/nix:latest d80fea9c32b4`
+        let split_res = line.split(' ').collect::<Vec<&str>>();
+        assert_eq!(split_res.len(), 2);
+        let (repo_tag, image_id) = (split_res[0], split_res[1]);
+
+        debug!(
+            "Querying '{} image inspect --format \"{{{{.Os}}}}/{{{{.Architecture}}}}\"' for container {}",
+            crt.display(),
+            image_id
+        );
+        let inspect_output = Command::new(crt)
+            .args(["image", "inspect", image_id, "--format", "{{.Os}}/{{.Architecture}}"])
+            .output_checked_with_utf8(|_| Ok(()))?;
+        let mut platform = inspect_output.stdout;
+        // truncate the tailing new line character
+        platform.truncate(platform.len() - 1);
+        assert!(platform.contains('/'));
+
+        retval.push(Container::new(repo_tag.to_string(), platform));
     }
 
     Ok(retval)
@@ -60,15 +109,20 @@ pub fn run_containers(ctx: &ExecutionContext) -> Result<()> {
 
     print_separator("Containers");
     let mut success = true;
-    let containers = list_containers(&crt)?;
+    let containers = list_containers(&crt).context("Failed to list Docker containers")?;
     debug!("Containers to inspect: {:?}", containers);
 
     for container in containers.iter() {
         debug!("Pulling container '{}'", container);
-        let args = vec!["pull", &container[..]];
+        let args = vec![
+            "pull",
+            container.repo_tag.as_str(),
+            "--platform",
+            container.platform.as_str(),
+        ];
         let mut exec = ctx.run_type().execute(&crt);
 
-        if let Err(e) = exec.args(&args).check_run() {
+        if let Err(e) = exec.args(&args).status_checked() {
             error!("Pulling container '{}' failed: {}", container, e);
 
             // Find out if this is 'skippable'
@@ -77,10 +131,10 @@ pub fn run_containers(ctx: &ExecutionContext) -> Result<()> {
             // practical consequence that all containers, whether self-built, created by
             // docker-compose or pulled from the docker hub, look exactly the same to us. We can
             // only find out what went wrong by manually parsing the output of the command...
-            if match exec.check_output() {
-                Ok(s) => s.contains(NONEXISTENT_REPO),
+            if match exec.output_checked_utf8() {
+                Ok(s) => s.stdout.contains(NONEXISTENT_REPO) || s.stderr.contains(NONEXISTENT_REPO),
                 Err(e) => match e.downcast_ref::<TopgradeError>() {
-                    Some(TopgradeError::ProcessFailedWithOutput(_, stderr)) => stderr.contains(NONEXISTENT_REPO),
+                    Some(TopgradeError::ProcessFailedWithOutput(_, _, stderr)) => stderr.contains(NONEXISTENT_REPO),
                     _ => false,
                 },
             } {
@@ -95,7 +149,12 @@ pub fn run_containers(ctx: &ExecutionContext) -> Result<()> {
     if ctx.config().cleanup() {
         // Remove dangling images
         debug!("Removing dangling images");
-        if let Err(e) = ctx.run_type().execute(&crt).args(["image", "prune", "-f"]).check_run() {
+        if let Err(e) = ctx
+            .run_type()
+            .execute(&crt)
+            .args(["image", "prune", "-f"])
+            .status_checked()
+        {
             error!("Removing dangling images failed: {}", e);
             success = false;
         }
@@ -104,6 +163,6 @@ pub fn run_containers(ctx: &ExecutionContext) -> Result<()> {
     if success {
         Ok(())
     } else {
-        Err(anyhow::anyhow!(error::StepFailed))
+        Err(eyre!(error::StepFailed))
     }
 }

src/steps/emacs.rs

@@ -1,10 +1,11 @@
-#[cfg(any(windows, target_os = "macos"))]
+#[cfg(windows)]
 use std::env;
 use std::path::{Path, PathBuf};
 
-use anyhow::Result;
-use directories::BaseDirs;
+use color_eyre::eyre::Result;
+use etcetera::base_strategy::BaseStrategy;
 
+use crate::command::CommandExt;
 use crate::execution_context::ExecutionContext;
 use crate::terminal::print_separator;
 use crate::utils::{require, require_option, PathExt};
@@ -22,20 +23,12 @@ pub struct Emacs {
 }
 
 impl Emacs {
-    fn directory_path(base_dirs: &BaseDirs) -> Option<PathBuf> {
+    fn directory_path() -> Option<PathBuf> {
         #[cfg(unix)]
-        cfg_if::cfg_if! {
-            if #[cfg(target_os = "macos")] {
-                let emacs_xdg_dir = env::var("XDG_CONFIG_HOME")
-                    .ok()
-                    .and_then(|config| PathBuf::from(config).join("emacs").if_exists())
-                    .or_else(|| base_dirs.home_dir().join(".config/emacs").if_exists());
-            } else {
-                let emacs_xdg_dir = base_dirs.config_dir().join("emacs").if_exists();
-            }
-        }
-        #[cfg(unix)]
-        return base_dirs.home_dir().join(".emacs.d").if_exists().or(emacs_xdg_dir);
+        return {
+            let emacs_xdg_dir = crate::XDG_DIRS.config_dir().join("emacs").if_exists();
+            crate::HOME_DIR.join(".emacs.d").if_exists().or(emacs_xdg_dir)
+        };
 
         #[cfg(windows)]
         return env::var("HOME")
@@ -46,11 +39,11 @@ impl Emacs {
                     .if_exists()
                     .or_else(|| PathBuf::from(&home).join(".config\\emacs").if_exists())
             })
-            .or_else(|| base_dirs.data_dir().join(".emacs.d").if_exists());
+            .or_else(|| crate::WINDOWS_DIRS.data_dir().join(".emacs.d").if_exists());
     }
 
-    pub fn new(base_dirs: &BaseDirs) -> Self {
-        let directory = Emacs::directory_path(base_dirs);
+    pub fn new() -> Self {
+        let directory = Emacs::directory_path();
         let doom = directory.as_ref().and_then(|d| d.join(DOOM_PATH).if_exists());
         Self { directory, doom }
     }
@@ -73,7 +66,7 @@ impl Emacs {
 
         command.args(["upgrade"]);
 
-        command.check_run()
+        command.status_checked()
     }
 
     pub fn upgrade(&self, ctx: &ExecutionContext) -> Result<()> {
@@ -105,6 +98,6 @@ impl Emacs {
         #[cfg(not(unix))]
         command.arg(EMACS_UPGRADE);
 
-        command.check_run()
+        command.status_checked()
     }
 }

src/steps/generic.rs

@@ -5,26 +5,30 @@ use std::process::Command;
 use std::{env, path::Path};
 use std::{fs, io::Write};
 
-use anyhow::Result;
-use directories::BaseDirs;
-use log::debug;
+use color_eyre::eyre::eyre;
+use color_eyre::eyre::Context;
+use color_eyre::eyre::Result;
 use tempfile::tempfile_in;
+use tracing::{debug, error};
 
+use crate::command::{CommandExt, Utf8Output};
 use crate::execution_context::ExecutionContext;
-use crate::executor::{CommandExt, ExecutorOutput, RunType};
+use crate::executor::ExecutorOutput;
 use crate::terminal::{print_separator, shell};
-use crate::utils::{self, require_option, PathExt};
+use crate::utils::{self, check_is_python_2_or_shim, require, require_option, which, PathExt, REQUIRE_SUDO};
+use crate::Step;
+use crate::HOME_DIR;
 use crate::{
-    error::{SkipStep, TopgradeError},
+    error::{SkipStep, StepFailed, TopgradeError},
     terminal::print_warning,
 };
 
 pub fn run_cargo_update(ctx: &ExecutionContext) -> Result<()> {
     let cargo_dir = env::var_os("CARGO_HOME")
         .map(PathBuf::from)
-        .unwrap_or_else(|| ctx.base_dirs().home_dir().join(".cargo"))
+        .unwrap_or_else(|| HOME_DIR.join(".cargo"))
         .require()?;
-    utils::require("cargo").or_else(|_| {
+    require("cargo").or_else(|_| {
         require_option(
             cargo_dir.join("bin/cargo").if_exists(),
             String::from("No cargo detected"),
@@ -38,7 +42,7 @@ pub fn run_cargo_update(ctx: &ExecutionContext) -> Result<()> {
     }
 
     print_separator("Cargo");
-    let cargo_update = utils::require("cargo-install-update")
+    let cargo_update = require("cargo-install-update")
         .ok()
         .or_else(|| cargo_dir.join("bin/cargo-install-update").if_exists());
     let cargo_update = match cargo_update {
@@ -53,37 +57,40 @@ pub fn run_cargo_update(ctx: &ExecutionContext) -> Result<()> {
     ctx.run_type()
         .execute(cargo_update)
         .args(["install-update", "--git", "--all"])
-        .check_run()
+        .status_checked()?;
+
+    if ctx.config().cleanup() {
+        let cargo_cache = require("cargo-cache")
+            .ok()
+            .or_else(|| cargo_dir.join("bin/cargo-cache").if_exists());
+        match cargo_cache {
+            Some(e) => {
+                ctx.run_type().execute(e).args(["-a"]).status_checked()?;
+            }
+            None => {
+                let message = String::from("cargo-cache isn't installed so Topgrade can't cleanup cargo packages.\nInstall cargo-cache by running `cargo install cargo-cache`");
+                print_warning(message);
+            }
+        }
+    }
+
+    Ok(())
 }
 
-pub fn run_flutter_upgrade(run_type: RunType) -> Result<()> {
-    let flutter = utils::require("flutter")?;
+pub fn run_flutter_upgrade(ctx: &ExecutionContext) -> Result<()> {
+    let flutter = require("flutter")?;
 
     print_separator("Flutter");
-    run_type.execute(flutter).arg("upgrade").check_run()
+    ctx.run_type().execute(flutter).arg("upgrade").status_checked()
 }
 
-pub fn run_go(run_type: RunType) -> Result<()> {
-    let go = utils::require("go")?;
-    let go_output = run_type.execute(go).args(["env", "GOPATH"]).check_output()?;
-    let gopath = go_output.trim();
+pub fn run_gem(ctx: &ExecutionContext) -> Result<()> {
+    let gem = require("gem")?;
+    HOME_DIR.join(".gem").require()?;
 
-    let go_global_update = utils::require("go-global-update")
-        .unwrap_or_else(|_| PathBuf::from(gopath).join("bin/go-global-update"))
-        .require()?;
+    print_separator("Gems");
 
-    print_separator("Go");
-
-    run_type.execute(go_global_update).check_run()
-}
-
-pub fn run_gem(base_dirs: &BaseDirs, run_type: RunType) -> Result<()> {
-    let gem = utils::require("gem")?;
-    base_dirs.home_dir().join(".gem").require()?;
-
-    print_separator("RubyGems");
-
-    let mut command = run_type.execute(gem);
+    let mut command = ctx.run_type().execute(gem);
     command.arg("update");
 
     if env::var_os("RBENV_SHELL").is_none() {
@@ -91,14 +98,41 @@ pub fn run_gem(base_dirs: &BaseDirs, run_type: RunType) -> Result<()> {
         command.arg("--user-install");
     }
 
-    command.check_run()
+    command.status_checked()
+}
+
+pub fn run_rubygems(ctx: &ExecutionContext) -> Result<()> {
+    HOME_DIR.join(".gem").require()?;
+    let gem = require("gem")?;
+
+    print_separator("RubyGems");
+    let gem_path_str = gem.as_os_str();
+    if gem_path_str.to_str().unwrap().contains("asdf") {
+        ctx.run_type()
+            .execute(gem)
+            .args(["update", "--system"])
+            .status_checked()?;
+    } else {
+        let sudo = require_option(ctx.sudo().as_ref(), REQUIRE_SUDO.to_string())?;
+        if !Path::new("/usr/lib/ruby/vendor_ruby/rubygems/defaults/operating_system.rb").exists() {
+            ctx.run_type()
+                .execute(sudo)
+                .arg("-EH")
+                .arg(gem)
+                .args(["update", "--system"])
+                .status_checked()?;
+        }
+    }
+
+    Ok(())
 }
 
 pub fn run_haxelib_update(ctx: &ExecutionContext) -> Result<()> {
-    let haxelib = utils::require("haxelib")?;
+    let haxelib = require("haxelib")?;
 
     let haxelib_dir =
-        PathBuf::from(std::str::from_utf8(&Command::new(&haxelib).arg("config").output()?.stdout)?.trim()).require()?;
+        PathBuf::from(std::str::from_utf8(&Command::new(&haxelib).arg("config").output_checked()?.stdout)?.trim())
+            .require()?;
 
     let directory_writable = tempfile_in(&haxelib_dir).is_ok();
     debug!("{:?} writable: {}", haxelib_dir, directory_writable);
@@ -108,44 +142,51 @@ pub fn run_haxelib_update(ctx: &ExecutionContext) -> Result<()> {
     let mut command = if directory_writable {
         ctx.run_type().execute(&haxelib)
     } else {
-        let mut c = ctx
-            .run_type()
-            .execute(ctx.sudo().as_ref().ok_or(TopgradeError::SudoRequired)?);
+        let sudo = require_option(ctx.sudo().as_ref(), REQUIRE_SUDO.to_string())?;
+        let mut c = ctx.run_type().execute(sudo);
         c.arg(&haxelib);
         c
     };
 
-    command.arg("update").check_run()
+    command.arg("update").status_checked()
 }
 
 pub fn run_sheldon(ctx: &ExecutionContext) -> Result<()> {
-    let sheldon = utils::require("sheldon")?;
+    let sheldon = require("sheldon")?;
 
     print_separator("Sheldon");
 
-    ctx.run_type().execute(sheldon).args(["lock", "--update"]).check_run()
+    ctx.run_type()
+        .execute(sheldon)
+        .args(["lock", "--update"])
+        .status_checked()
 }
 
-pub fn run_fossil(run_type: RunType) -> Result<()> {
-    let fossil = utils::require("fossil")?;
+pub fn run_fossil(ctx: &ExecutionContext) -> Result<()> {
+    let fossil = require("fossil")?;
 
     print_separator("Fossil");
 
-    run_type.execute(fossil).args(["all", "sync"]).check_run()
+    ctx.run_type().execute(fossil).args(["all", "sync"]).status_checked()
 }
 
-pub fn run_micro(run_type: RunType) -> Result<()> {
-    let micro = utils::require("micro")?;
+pub fn run_micro(ctx: &ExecutionContext) -> Result<()> {
+    let micro = require("micro")?;
 
     print_separator("micro");
 
-    let stdout = run_type.execute(micro).args(["-plugin", "update"]).string_output()?;
+    let stdout = ctx
+        .run_type()
+        .execute(micro)
+        .args(["-plugin", "update"])
+        .output_checked_utf8()?
+        .stdout;
     std::io::stdout().write_all(stdout.as_bytes())?;
 
     if stdout.contains("Nothing to install / update") || stdout.contains("One or more plugins installed") {
         Ok(())
     } else {
-        Err(anyhow::anyhow!("micro output does not indicate success: {}", stdout))
+        Err(eyre!("micro output does not indicate success: {}", stdout))
     }
 }
 
@@ -155,158 +196,335 @@ pub fn run_micro(run_type: RunType) -> Result<()> {
     target_os = "netbsd",
     target_os = "dragonfly"
 )))]
-pub fn run_apm(run_type: RunType) -> Result<()> {
-    let apm = utils::require("apm")?;
+pub fn run_apm(ctx: &ExecutionContext) -> Result<()> {
+    let apm = require("apm")?;
 
     print_separator("Atom Package Manager");
 
-    run_type.execute(apm).args(["upgrade", "--confirm=false"]).check_run()
+    ctx.run_type()
+        .execute(apm)
+        .args(["upgrade", "--confirm=false"])
+        .status_checked()
 }
 
-pub fn run_rustup(base_dirs: &BaseDirs, run_type: RunType) -> Result<()> {
-    let rustup = utils::require("rustup")?;
+pub fn run_rustup(ctx: &ExecutionContext) -> Result<()> {
+    let rustup = require("rustup")?;
 
     print_separator("rustup");
+    ctx.run_type().execute(rustup).arg("update").status_checked()
+}
 
-    if rustup.canonicalize()?.is_descendant_of(base_dirs.home_dir()) {
-        run_type.execute(&rustup).args(["self", "update"]).check_run()?;
+pub fn run_juliaup(ctx: &ExecutionContext) -> Result<()> {
+    let juliaup = require("juliaup")?;
+
+    print_separator("juliaup");
+
+    if juliaup.canonicalize()?.is_descendant_of(&HOME_DIR) {
+        ctx.run_type()
+            .execute(&juliaup)
+            .args(["self", "update"])
+            .status_checked()?;
     }
 
-    run_type.execute(&rustup).arg("update").check_run()
+    ctx.run_type().execute(&juliaup).arg("update").status_checked()
 }
 
 pub fn run_choosenim(ctx: &ExecutionContext) -> Result<()> {
-    let choosenim = utils::require("choosenim")?;
+    let choosenim = require("choosenim")?;
 
     print_separator("choosenim");
     let run_type = ctx.run_type();
 
-    run_type.execute(&choosenim).args(["update", "self"]).check_run()?;
-    run_type.execute(&choosenim).args(["update", "stable"]).check_run()
+    run_type.execute(&choosenim).args(["update", "self"]).status_checked()?;
+    run_type.execute(&choosenim).args(["update", "stable"]).status_checked()
 }
 
-pub fn run_krew_upgrade(run_type: RunType) -> Result<()> {
-    let krew = utils::require("kubectl-krew")?;
+pub fn run_krew_upgrade(ctx: &ExecutionContext) -> Result<()> {
+    let krew = require("kubectl-krew")?;
 
     print_separator("Krew");
 
-    run_type.execute(krew).args(["upgrade"]).check_run()
+    ctx.run_type().execute(krew).args(["upgrade"]).status_checked()
 }
 
-pub fn run_gcloud_components_update(run_type: RunType) -> Result<()> {
-    let gcloud = utils::require("gcloud")?;
+pub fn run_gcloud_components_update(ctx: &ExecutionContext) -> Result<()> {
+    let gcloud = require("gcloud")?;
 
+    if gcloud.starts_with("/snap") {
+        Ok(())
+    } else {
         print_separator("gcloud");
 
-    run_type
+        ctx.run_type()
             .execute(gcloud)
             .args(["components", "update", "--quiet"])
-        .check_run()
+            .status_checked()
+    }
 }
 
-pub fn run_jetpack(run_type: RunType) -> Result<()> {
-    let jetpack = utils::require("jetpack")?;
+pub fn run_jetpack(ctx: &ExecutionContext) -> Result<()> {
+    let jetpack = require("jetpack")?;
 
     print_separator("Jetpack");
 
-    run_type.execute(jetpack).args(["global", "update"]).check_run()
+    ctx.run_type()
+        .execute(jetpack)
+        .args(["global", "update"])
+        .status_checked()
 }
 
 pub fn run_rtcl(ctx: &ExecutionContext) -> Result<()> {
-    let rupdate = utils::require("rupdate")?;
+    let rupdate = require("rupdate")?;
 
     print_separator("rtcl");
 
-    ctx.run_type().execute(rupdate).check_run()
+    ctx.run_type().execute(rupdate).status_checked()
 }
 
 pub fn run_opam_update(ctx: &ExecutionContext) -> Result<()> {
-    let opam = utils::require("opam")?;
+    let opam = require("opam")?;
 
     print_separator("OCaml Package Manager");
 
-    ctx.run_type().execute(&opam).arg("update").check_run()?;
-    ctx.run_type().execute(&opam).arg("upgrade").check_run()?;
+    ctx.run_type().execute(&opam).arg("update").status_checked()?;
+
+    let mut command = ctx.run_type().execute(&opam);
+    command.arg("upgrade");
+    if ctx.config().yes(Step::Opam) {
+        command.arg("--yes");
+    }
+    command.status_checked()?;
 
     if ctx.config().cleanup() {
-        ctx.run_type().execute(&opam).arg("clean").check_run()?;
+        ctx.run_type().execute(&opam).arg("clean").status_checked()?;
     }
 
     Ok(())
 }
 
-pub fn run_vcpkg_update(run_type: RunType) -> Result<()> {
-    let vcpkg = utils::require("vcpkg")?;
+pub fn run_vcpkg_update(ctx: &ExecutionContext) -> Result<()> {
+    let vcpkg = require("vcpkg")?;
     print_separator("vcpkg");
 
-    run_type.execute(vcpkg).args(["upgrade", "--no-dry-run"]).check_run()
+    #[cfg(unix)]
+    let is_root_install = !&vcpkg.starts_with("/home");
+
+    #[cfg(not(unix))]
+    let is_root_install = false;
+
+    let mut command = if is_root_install {
+        ctx.run_type().execute(&vcpkg)
+    } else {
+        let sudo = require_option(ctx.sudo().as_ref(), REQUIRE_SUDO.to_string())?;
+        let mut c = ctx.run_type().execute(sudo);
+        c.arg(&vcpkg);
+        c
+    };
+
+    command.args(["upgrade", "--no-dry-run"]).status_checked()
 }
 
-pub fn run_pipx_update(run_type: RunType) -> Result<()> {
-    let pipx = utils::require("pipx")?;
+pub fn run_vscode_extensions_upgrade(ctx: &ExecutionContext) -> Result<()> {
+    let vscode = require("code")?;
+    print_separator("Visual Studio Code extensions");
+
+    // Vscode does not have CLI command to upgrade all extensions (see https://github.com/microsoft/vscode/issues/56578)
+    // Instead we get the list of installed extensions with `code --list-extensions` command (obtain a line-return separated list of installed extensions)
+    let extensions = Command::new(&vscode)
+        .arg("--list-extensions")
+        .output_checked_utf8()?
+        .stdout;
+
+    // Then we construct the upgrade command: `code --force --install-extension [ext0] --install-extension [ext1] ... --install-extension [extN]`
+    if !extensions.is_empty() {
+        let mut command_args = vec!["--force"];
+        for extension in extensions.split_whitespace() {
+            command_args.extend(["--install-extension", extension]);
+        }
+
+        ctx.run_type().execute(&vscode).args(command_args).status_checked()?;
+    }
+
+    Ok(())
+}
+
+pub fn run_pipx_update(ctx: &ExecutionContext) -> Result<()> {
+    let pipx = require("pipx")?;
     print_separator("pipx");
 
-    run_type.execute(pipx).arg("upgrade-all").check_run()
+    ctx.run_type().execute(pipx).arg("upgrade-all").status_checked()
 }
 
 pub fn run_conda_update(ctx: &ExecutionContext) -> Result<()> {
-    let conda = utils::require("conda")?;
+    let conda = require("conda")?;
 
     let output = Command::new("conda")
         .args(["config", "--show", "auto_activate_base"])
-        .output()?;
-    let string_output = String::from_utf8(output.stdout)?;
-    debug!("Conda output: {}", string_output);
-    if string_output.contains("False") {
+        .output_checked_utf8()?;
+    debug!("Conda output: {}", output.stdout);
+    if output.stdout.contains("False") {
         return Err(SkipStep("auto_activate_base is set to False".to_string()).into());
     }
 
     print_separator("Conda");
 
-    ctx.run_type()
-        .execute(conda)
-        .args(["update", "--all", "-y"])
-        .check_run()
+    let mut command = ctx.run_type().execute(conda);
+    command.args(["update", "--all", "-n", "base"]);
+    if ctx.config().yes(Step::Conda) {
+        command.arg("--yes");
+    }
+    command.status_checked()
 }
 
-pub fn run_pip3_update(run_type: RunType) -> Result<()> {
-    let python3 = utils::require("python3")?;
+pub fn run_mamba_update(ctx: &ExecutionContext) -> Result<()> {
+    let mamba = require("mamba")?;
+
+    let output = Command::new("mamba")
+        .args(["config", "--show", "auto_activate_base"])
+        .output_checked_utf8()?;
+    debug!("Mamba output: {}", output.stdout);
+    if output.stdout.contains("False") {
+        return Err(SkipStep("auto_activate_base is set to False".to_string()).into());
+    }
+
+    print_separator("Mamba");
+
+    let mut command = ctx.run_type().execute(mamba);
+    command.args(["update", "--all", "-n", "base"]);
+    if ctx.config().yes(Step::Mamba) {
+        command.arg("--yes");
+    }
+    command.status_checked()
+}
+
+pub fn run_miktex_packages_update(ctx: &ExecutionContext) -> Result<()> {
+    let miktex = require("miktex")?;
+    print_separator("miktex");
+
+    ctx.run_type()
+        .execute(miktex)
+        .args(["packages", "update"])
+        .status_checked()
+}
+
+pub fn run_pip3_update(ctx: &ExecutionContext) -> Result<()> {
+    let py = require("python").and_then(check_is_python_2_or_shim);
+    let py3 = require("python3").and_then(check_is_python_2_or_shim);
+
+    let python3 = match (py, py3) {
+        // prefer `python` if it is available and is a valid Python 3.
+        (Ok(py), _) => py,
+        (Err(_), Ok(py3)) => py3,
+        (Err(py_err), Err(py3_err)) => {
+            return Err(SkipStep(format!("Skip due to following reasons: {} {}", py_err, py3_err)).into());
+        }
+    };
+
     Command::new(&python3)
         .args(["-m", "pip"])
-        .check_output()
-        .map_err(|_| SkipStep("pip does not exists".to_string()))?;
+        .output_checked_utf8()
+        .map_err(|_| SkipStep("pip does not exist".to_string()))?;
+
+    let check_externally_managed = "import sysconfig; from os import path; print('Y') if path.isfile(path.join(sysconfig.get_path('stdlib'), 'EXTERNALLY-MANAGED')) else print('N')";
+    Command::new(&python3)
+        .args(["-c", check_externally_managed])
+        .output_checked_utf8()
+        .map_err(|_| SkipStep("pip may be externally managed".to_string()))
+        .and_then(|output| match output.stdout.trim() {
+            "N" => Ok(()),
+            "Y" => Err(SkipStep("pip is externally managed".to_string())),
+            _ => {
+                print_warning("Unexpected output when checking EXTERNALLY-MANAGED");
+                print_warning(output.stdout.trim());
+                Err(SkipStep("pip may be externally managed".to_string()))
+            }
+        })?;
 
     print_separator("pip3");
-    if std::env::var("VIRTUAL_ENV").is_ok() {
+    if env::var("VIRTUAL_ENV").is_ok() {
         print_warning("This step is will be skipped when running inside a virtual environment");
         return Err(SkipStep("Does not run inside a virtual environment".to_string()).into());
     }
 
-    run_type
+    ctx.run_type()
         .execute(&python3)
         .args(["-m", "pip", "install", "--upgrade", "--user", "pip"])
-        .check_run()
+        .status_checked()
 }
 
-pub fn run_stack_update(run_type: RunType) -> Result<()> {
-    if utils::require("ghcup").is_ok() {
+pub fn run_pip_review_update(ctx: &ExecutionContext) -> Result<()> {
+    let pip_review = require("pip-review")?;
+
+    print_separator("pip-review");
+
+    if !ctx.config().enable_pip_review() {
+        print_warning(
+            "Pip-review is disabled by default. Enable it by setting enable_pip_review=true in the configuration.",
+        );
+        return Err(SkipStep(String::from("Pip-review is disabled by default")).into());
+    }
+    ctx.run_type()
+        .execute(pip_review)
+        .arg("--auto")
+        .status_checked_with_codes(&[1])?;
+
+    Ok(())
+}
+pub fn run_pip_review_local_update(ctx: &ExecutionContext) -> Result<()> {
+    let pip_review = require("pip-review")?;
+
+    print_separator("pip-review (local)");
+
+    if !ctx.config().enable_pip_review_local() {
+        print_warning(
+            "Pip-review (local) is disabled by default. Enable it by setting enable_pip_review_local=true in the configuration.",
+        );
+        return Err(SkipStep(String::from("Pip-review (local) is disabled by default")).into());
+    }
+    ctx.run_type()
+        .execute(pip_review)
+        .arg("--local")
+        .arg("--auto")
+        .status_checked_with_codes(&[1])?;
+
+    Ok(())
+}
+pub fn run_pipupgrade_update(ctx: &ExecutionContext) -> Result<()> {
+    let pipupgrade = require("pipupgrade")?;
+
+    print_separator("Pipupgrade");
+    if !ctx.config().enable_pipupgrade() {
+        print_warning(
+            "Pipupgrade is disabled by default. Enable it by setting enable_pipupgrade=true in the configuration.",
+        );
+        return Err(SkipStep(String::from("Pipupgrade is disabled by default")).into());
+    }
+    ctx.run_type()
+        .execute(pipupgrade)
+        .args(ctx.config().pipupgrade_arguments().split_whitespace())
+        .status_checked()?;
+
+    Ok(())
+}
+pub fn run_stack_update(ctx: &ExecutionContext) -> Result<()> {
+    if require("ghcup").is_ok() {
         // `ghcup` is present and probably(?) being used to install `stack`.
         // Don't upgrade `stack`, let `ghcup` handle it. Per `ghcup install stack`:
         // !!! Additionally, you should upgrade stack only through ghcup and not use 'stack upgrade' !!!
         return Ok(());
     }
 
-    let stack = utils::require("stack")?;
+    let stack = require("stack")?;
     print_separator("stack");
 
-    run_type.execute(stack).arg("upgrade").check_run()
+    ctx.run_type().execute(stack).arg("upgrade").status_checked()
 }
 
-pub fn run_ghcup_update(run_type: RunType) -> Result<()> {
-    let ghcup = utils::require("ghcup")?;
+pub fn run_ghcup_update(ctx: &ExecutionContext) -> Result<()> {
+    let ghcup = require("ghcup")?;
     print_separator("ghcup");
 
-    run_type.execute(ghcup).arg("upgrade").check_run()
+    ctx.run_type().execute(ghcup).arg("upgrade").status_checked()
 }
 
 pub fn run_tlmgr_update(ctx: &ExecutionContext) -> Result<()> {
@@ -318,16 +536,14 @@ pub fn run_tlmgr_update(ctx: &ExecutionContext) -> Result<()> {
         }
     }
 
-    let tlmgr = utils::require("tlmgr")?;
-    let kpsewhich = utils::require("kpsewhich")?;
+    let tlmgr = require("tlmgr")?;
+    let kpsewhich = require("kpsewhich")?;
     let tlmgr_directory = {
         let mut d = PathBuf::from(
-            std::str::from_utf8(
             &Command::new(kpsewhich)
                 .arg("-var-value=SELFAUTOPARENT")
-                    .output()?
-                    .stdout,
-            )?
+                .output_checked_utf8()?
+                .stdout
                 .trim(),
         );
         d.push("tlpkg");
@@ -343,61 +559,68 @@ pub fn run_tlmgr_update(ctx: &ExecutionContext) -> Result<()> {
     let mut command = if directory_writable {
         ctx.run_type().execute(&tlmgr)
     } else {
-        let mut c = ctx
-            .run_type()
-            .execute(ctx.sudo().as_ref().ok_or(TopgradeError::SudoRequired)?);
+        let sudo = require_option(ctx.sudo().as_ref(), REQUIRE_SUDO.to_string())?;
+        let mut c = ctx.run_type().execute(sudo);
         c.arg(&tlmgr);
         c
     };
     command.args(["update", "--self", "--all"]);
 
-    command.check_run()
+    command.status_checked()
 }
 
-pub fn run_chezmoi_update(base_dirs: &BaseDirs, run_type: RunType) -> Result<()> {
-    let chezmoi = utils::require("chezmoi")?;
-    base_dirs.home_dir().join(".local/share/chezmoi").require()?;
+pub fn run_chezmoi_update(ctx: &ExecutionContext) -> Result<()> {
+    let chezmoi = require("chezmoi")?;
+    HOME_DIR.join(".local/share/chezmoi").require()?;
 
     print_separator("chezmoi");
 
-    run_type.execute(chezmoi).arg("update").check_run()
+    ctx.run_type().execute(chezmoi).arg("update").status_checked()
 }
 
-pub fn run_myrepos_update(base_dirs: &BaseDirs, run_type: RunType) -> Result<()> {
-    let myrepos = utils::require("mr")?;
-    base_dirs.home_dir().join(".mrconfig").require()?;
+pub fn run_myrepos_update(ctx: &ExecutionContext) -> Result<()> {
+    let myrepos = require("mr")?;
+    HOME_DIR.join(".mrconfig").require()?;
 
     print_separator("myrepos");
 
-    run_type
+    ctx.run_type()
         .execute(&myrepos)
         .arg("--directory")
-        .arg(base_dirs.home_dir())
+        .arg(&*HOME_DIR)
         .arg("checkout")
-        .check_run()?;
-    run_type
+        .status_checked()?;
+    ctx.run_type()
         .execute(&myrepos)
         .arg("--directory")
-        .arg(base_dirs.home_dir())
+        .arg(&*HOME_DIR)
         .arg("update")
-        .check_run()
+        .status_checked()
 }
 
 pub fn run_custom_command(name: &str, command: &str, ctx: &ExecutionContext) -> Result<()> {
     print_separator(name);
-    ctx.run_type().execute(shell()).arg("-c").arg(command).check_run()
+    let mut exec = ctx.run_type().execute(shell());
+    #[cfg(unix)]
+    let command = if let Some(command) = command.strip_prefix("-i ") {
+        exec.arg("-i");
+        command
+    } else {
+        command
+    };
+    exec.arg("-c").arg(command).status_checked()
 }
 
 pub fn run_composer_update(ctx: &ExecutionContext) -> Result<()> {
-    let composer = utils::require("composer")?;
+    let composer = require("composer")?;
     let composer_home = Command::new(&composer)
         .args(["global", "config", "--absolute", "--quiet", "home"])
-        .check_output()
-        .map_err(|e| (SkipStep(format!("Error getting the composer directory: {}", e))))
-        .map(|s| PathBuf::from(s.trim()))?
+        .output_checked_utf8()
+        .map_err(|e| (SkipStep(format!("Error getting the composer directory: {e}"))))
+        .map(|s| PathBuf::from(s.stdout.trim()))?
         .require()?;
 
-    if !composer_home.is_descendant_of(ctx.base_dirs().home_dir()) {
+    if !composer_home.is_descendant_of(&HOME_DIR) {
         return Err(SkipStep(format!(
             "Composer directory {} isn't a decandent of the user's home directory",
             composer_home.display()
@@ -417,30 +640,27 @@ pub fn run_composer_update(ctx: &ExecutionContext) -> Result<()> {
                 };
 
                 if has_update {
+                    let sudo = require_option(ctx.sudo().as_ref(), REQUIRE_SUDO.to_string())?;
                     ctx.run_type()
-                        .execute(ctx.sudo().as_ref().unwrap())
+                        .execute(sudo)
                         .arg(&composer)
                         .arg("self-update")
-                        .check_run()?;
+                        .status_checked()?;
                 }
             } else {
-                ctx.run_type().execute(&composer).arg("self-update").check_run()?;
+                ctx.run_type().execute(&composer).arg("self-update").status_checked()?;
             }
         }
     }
 
-    let output = Command::new(&composer).args(["global", "update"]).output()?;
-    let status = output.status;
-    if !status.success() {
-        return Err(TopgradeError::ProcessFailed(status).into());
+    let output = ctx.run_type().execute(&composer).args(["global", "update"]).output()?;
+    if let ExecutorOutput::Wet(output) = output {
+        let output: Utf8Output = output.try_into()?;
+        print!("{}\n{}", output.stdout, output.stderr);
+        if output.stdout.contains("valet") || output.stderr.contains("valet") {
+            if let Some(valet) = which("valet") {
+                ctx.run_type().execute(valet).arg("install").status_checked()?;
             }
-    let stdout = String::from_utf8(output.stdout)?;
-    let stderr = String::from_utf8(output.stderr)?;
-    print!("{}\n{}", stdout, stderr);
-
-    if stdout.contains("valet") || stderr.contains("valet") {
-        if let Some(valet) = utils::which("valet") {
-            ctx.run_type().execute(valet).arg("install").check_run()?;
         }
     }
 
@@ -448,20 +668,43 @@ pub fn run_composer_update(ctx: &ExecutionContext) -> Result<()> {
 }
 
 pub fn run_dotnet_upgrade(ctx: &ExecutionContext) -> Result<()> {
-    let dotnet = utils::require("dotnet")?;
+    let dotnet = require("dotnet")?;
 
-    let output = Command::new(dotnet).args(["tool", "list", "--global"]).output()?;
-
-    if !output.status.success() {
-        return Err(SkipStep(format!("dotnet failed with exit code {:?}", output.status)).into());
+    // Skip when the `dotnet tool list` subcommand fails.
+    // (This is expected when a dotnet runtime is installed but no SDK.)
+    let output = match ctx
+        .run_type()
+        .execute(&dotnet)
+        .args(["tool", "list", "--global"])
+        // dotnet will print a greeting message on its first run, from this question:
+        // https://stackoverflow.com/q/70493706/14092446
+        // Setting `DOTNET_NOLOGO` to `true` should disable it
+        .env("DOTNET_NOLOGO", "true")
+        .output_checked_utf8()
+    {
+        Ok(output) => output,
+        Err(_) => {
+            return Err(SkipStep(String::from(
+                "Error running `dotnet tool list`. This is expected when a dotnet runtime is installed but no SDK.",
+            ))
+            .into())
         }
+    };
 
-    let output = String::from_utf8(output.stdout)?;
-    if !output.starts_with("Package Id") {
-        return Err(SkipStep(String::from("dotnet did not output packages")).into());
-    }
-
-    let mut packages = output.split('\n').skip(2).filter(|line| !line.is_empty()).peekable();
+    let mut packages = output
+        .stdout
+        .lines()
+        // Skip the header:
+        //
+        // Package Id      Version      Commands
+        // -------------------------------------
+        //
+        // One thing to note is that .NET SDK respect locale, which means this
+        // header can be printed in languages other than English, do NOT use it
+        // to do any check.
+        .skip(2)
+        .filter(|line| !line.is_empty())
+        .peekable();
 
     if packages.peek().is_none() {
         return Err(SkipStep(String::from("No dotnet global tools installed")).into());
@@ -472,39 +715,65 @@ pub fn run_dotnet_upgrade(ctx: &ExecutionContext) -> Result<()> {
     for package in packages {
         let package_name = package.split_whitespace().next().unwrap();
         ctx.run_type()
-            .execute("dotnet")
+            .execute(&dotnet)
             .args(["tool", "update", package_name, "--global"])
-            .check_run()?;
+            .status_checked()
+            .with_context(|| format!("Failed to update .NET package {package_name}"))?;
     }
 
     Ok(())
 }
 
-pub fn run_raco_update(run_type: RunType) -> Result<()> {
-    let raco = utils::require("raco")?;
+pub fn run_helix_grammars(ctx: &ExecutionContext) -> Result<()> {
+    require("helix")?;
+
+    print_separator("Helix");
+
+    let sudo = require_option(ctx.sudo().as_ref(), REQUIRE_SUDO.to_string())?;
+    ctx.run_type()
+        .execute(sudo)
+        .args(["helix", "--grammar", "fetch"])
+        .status_checked()
+        .with_context(|| "Failed to download helix grammars!")?;
+
+    ctx.run_type()
+        .execute(sudo)
+        .args(["helix", "--grammar", "build"])
+        .status_checked()
+        .with_context(|| "Failed to build helix grammars!")?;
+
+    Ok(())
+}
+
+pub fn run_raco_update(ctx: &ExecutionContext) -> Result<()> {
+    let raco = require("raco")?;
 
     print_separator("Racket Package Manager");
 
-    run_type.execute(raco).args(["pkg", "update", "--all"]).check_run()
+    ctx.run_type()
+        .execute(raco)
+        .args(["pkg", "update", "--all"])
+        .status_checked()
 }
 
 pub fn bin_update(ctx: &ExecutionContext) -> Result<()> {
-    let bin = utils::require("bin")?;
+    let bin = require("bin")?;
 
     print_separator("Bin");
-    ctx.run_type().execute(bin).arg("update").check_run()
+    ctx.run_type().execute(bin).arg("update").status_checked()
 }
 
 pub fn spicetify_upgrade(ctx: &ExecutionContext) -> Result<()> {
-    let spicetify = utils::require("spicetify")?;
+    // As of 04-07-2023 NixOS packages Spicetify with the `spicetify-cli` binary name
+    let spicetify = require("spicetify").or(require("spicetify-cli"))?;
 
     print_separator("Spicetify");
-    ctx.run_type().execute(spicetify).arg("upgrade").check_run()
+    ctx.run_type().execute(spicetify).arg("upgrade").status_checked()
 }
 
 pub fn run_ghcli_extensions_upgrade(ctx: &ExecutionContext) -> Result<()> {
-    let gh = utils::require("gh")?;
-    let result = Command::new(&gh).args(["extensions", "list"]).check_output();
+    let gh = require("gh")?;
+    let result = Command::new(&gh).args(["extensions", "list"]).output_checked_utf8();
     if result.is_err() {
         debug!("GH result {:?}", result);
         return Err(SkipStep(String::from("GH failed")).into());
@@ -514,16 +783,57 @@ pub fn run_ghcli_extensions_upgrade(ctx: &ExecutionContext) -> Result<()> {
     ctx.run_type()
         .execute(&gh)
         .args(["extension", "upgrade", "--all"])
-        .check_run()
+        .status_checked()
 }
 
 pub fn update_julia_packages(ctx: &ExecutionContext) -> Result<()> {
-    let julia = utils::require("julia")?;
+    let julia = require("julia")?;
 
     print_separator("Julia Packages");
 
     ctx.run_type()
         .execute(julia)
         .args(["-e", "using Pkg; Pkg.update()"])
-        .check_run()
+        .status_checked()
+}
+
+pub fn run_helm_repo_update(ctx: &ExecutionContext) -> Result<()> {
+    let helm = require("helm")?;
+
+    print_separator("Helm");
+
+    let no_repo = "no repositories found";
+    let mut success = true;
+    let mut exec = ctx.run_type().execute(helm);
+    if let Err(e) = exec.arg("repo").arg("update").status_checked() {
+        error!("Updating repositories failed: {}", e);
+        success = match exec.output_checked_utf8() {
+            Ok(s) => s.stdout.contains(no_repo) || s.stderr.contains(no_repo),
+            Err(e) => match e.downcast_ref::<TopgradeError>() {
+                Some(TopgradeError::ProcessFailedWithOutput(_, _, stderr)) => stderr.contains(no_repo),
+                _ => false,
+            },
+        };
+    }
+
+    if success {
+        Ok(())
+    } else {
+        Err(eyre!(StepFailed))
+    }
+}
+
+pub fn run_stew(ctx: &ExecutionContext) -> Result<()> {
+    let stew = require("stew")?;
+
+    print_separator("stew");
+    ctx.run_type().execute(stew).args(["upgrade", "--all"]).status_checked()
+}
+
+pub fn run_bob(ctx: &ExecutionContext) -> Result<()> {
+    let bob = require("bob")?;
+
+    print_separator("Bob");
+
+    ctx.run_type().execute(bob).args(["update", "--all"]).status_checked()
 }

src/steps/git.rs

@@ -3,17 +3,18 @@ use std::io;
 use std::path::{Path, PathBuf};
 use std::process::{Command, Output, Stdio};
 
-use anyhow::{anyhow, Result};
+use color_eyre::eyre::Context;
+use color_eyre::eyre::{eyre, Result};
 use console::style;
 use futures::stream::{iter, FuturesUnordered};
 use futures::StreamExt;
 use glob::{glob_with, MatchOptions};
-use log::{debug, error};
 use tokio::process::Command as AsyncCommand;
 use tokio::runtime;
+use tracing::{debug, error};
 
+use crate::command::CommandExt;
 use crate::execution_context::ExecutionContext;
-use crate::executor::{CommandExt, RunType};
 use crate::terminal::print_separator;
 use crate::utils::{which, PathExt};
 use crate::{error::SkipStep, terminal::print_warning};
@@ -26,21 +27,61 @@ pub struct Git {
     git: Option<PathBuf>,
 }
 
+#[derive(Clone, Copy)]
+pub enum GitAction {
+    Push,
+    Pull,
+}
+
+#[derive(Debug)]
 pub struct Repositories<'a> {
     git: &'a Git,
-    repositories: HashSet<String>,
+    pull_repositories: HashSet<String>,
+    push_repositories: HashSet<String>,
     glob_match_options: MatchOptions,
     bad_patterns: Vec<String>,
 }
 
-fn check_output(output: Output) -> Result<()> {
+#[track_caller]
+fn output_checked_utf8(output: Output) -> Result<()> {
     if !(output.status.success()) {
-        let stderr = String::from_utf8(output.stderr).unwrap();
-        Err(anyhow!(stderr))
+        let stderr = String::from_utf8_lossy(&output.stderr);
+        let stderr = stderr.trim();
+        Err(eyre!("{stderr}"))
     } else {
         Ok(())
     }
 }
+async fn push_repository(repo: String, git: &Path, ctx: &ExecutionContext<'_>) -> Result<()> {
+    let path = repo.to_string();
+
+    println!("{} {}", style("Pushing").cyan().bold(), path);
+
+    let mut command = AsyncCommand::new(git);
+
+    command
+        .stdin(Stdio::null())
+        .current_dir(&repo)
+        .args(["push", "--porcelain"]);
+    if let Some(extra_arguments) = ctx.config().push_git_arguments() {
+        command.args(extra_arguments.split_whitespace());
+    }
+
+    let output = command.output().await?;
+    let result = match output.status.success() {
+        true => Ok(()),
+        false => Err(format!("Failed to push {repo}")),
+    };
+
+    if result.is_err() {
+        println!("{} pushing {}", style("Failed").red().bold(), &repo);
+    };
+
+    match result {
+        Ok(_) => Ok(()),
+        Err(e) => Err(eyre!(e)),
+    }
+}
 
 async fn pull_repository(repo: String, git: &Path, ctx: &ExecutionContext<'_>) -> Result<()> {
     let path = repo.to_string();
@@ -55,7 +96,7 @@ async fn pull_repository(repo: String, git: &Path, ctx: &ExecutionContext<'_>) -
         .current_dir(&repo)
         .args(["pull", "--ff-only"]);
 
-    if let Some(extra_arguments) = ctx.config().git_arguments() {
+    if let Some(extra_arguments) = ctx.config().pull_git_arguments() {
         command.args(extra_arguments.split_whitespace());
     }
 
@@ -66,11 +107,12 @@ async fn pull_repository(repo: String, git: &Path, ctx: &ExecutionContext<'_>) -
         .stdin(Stdio::null())
         .output()
         .await?;
-    let result = check_output(pull_output).and_then(|_| check_output(submodule_output));
+    let result = output_checked_utf8(pull_output)
+        .and_then(|_| output_checked_utf8(submodule_output))
+        .wrap_err_with(|| format!("Failed to pull {repo}"));
 
-    if let Err(message) = &result {
+    if result.is_err() {
         println!("{} pulling {}", style("Failed").red().bold(), &repo);
-        print!("{}", message);
     } else {
         let after_revision = get_head_revision(git, &repo);
 
@@ -86,12 +128,9 @@ async fn pull_repository(repo: String, git: &Path, ctx: &ExecutionContext<'_>) -
                         "log",
                         "--no-decorate",
                         "--oneline",
-                        &format!("{}..{}", before, after),
+                        &format!("{before}..{after}"),
                     ])
-                    .spawn()
-                    .unwrap()
-                    .wait()
-                    .unwrap();
+                    .status_checked()?;
                 println!();
             }
             _ => {
@@ -108,8 +147,8 @@ fn get_head_revision(git: &Path, repo: &str) -> Option<String> {
         .stdin(Stdio::null())
         .current_dir(repo)
         .args(["rev-parse", "HEAD"])
-        .check_output()
-        .map(|output| output.trim().to_string())
+        .output_checked_utf8()
+        .map(|output| output.stdout.trim().to_string())
         .map_err(|e| {
             error!("Error getting revision for {}: {}", repo, e);
 
@@ -123,8 +162,8 @@ fn has_remotes(git: &Path, repo: &str) -> Option<bool> {
         .stdin(Stdio::null())
         .current_dir(repo)
         .args(["remote", "show"])
-        .check_output()
-        .map(|output| output.lines().count() > 0)
+        .output_checked_utf8()
+        .map(|output| output.stdout.lines().count() > 0)
         .map_err(|e| {
             error!("Error getting remotes for {}: {}", repo, e);
             e
@@ -166,39 +205,48 @@ impl Git {
                         .stdin(Stdio::null())
                         .current_dir(path)
                         .args(["rev-parse", "--show-toplevel"])
-                        .check_output()
+                        .output_checked_utf8()
                         .ok()
-                        .map(|output| output.trim().to_string());
+                        .map(|output| output.stdout.trim().to_string());
                     return output;
                 }
             }
             Err(e) => match e.kind() {
-                io::ErrorKind::NotFound => debug!("{} does not exists", path.as_ref().display()),
+                io::ErrorKind::NotFound => debug!("{} does not exist", path.as_ref().display()),
                 _ => error!("Error looking for {}: {}", path.as_ref().display(), e),
             },
         }
 
         None
     }
-    pub fn multi_pull_step(&self, repositories: &Repositories, ctx: &ExecutionContext) -> Result<()> {
-        if repositories.repositories.is_empty() {
-            return Err(SkipStep(String::from("No repositories to pull")).into());
-        }
-
-        print_separator("Git repositories");
+    pub fn multi_repo_step(&self, repositories: &Repositories, ctx: &ExecutionContext) -> Result<()> {
+        // Warn the user about the bad patterns.
+        //
+        // NOTE: this should be executed **before** skipping the Git step or the
+        // user won't receive this warning in the cases where all the paths configured
+        // are bad patterns.
         repositories
             .bad_patterns
             .iter()
-            .for_each(|pattern| print_warning(format!("Path {} did not contain any git repositories", pattern)));
-        self.multi_pull(repositories, ctx)
+            .for_each(|pattern| print_warning(format!("Path {pattern} did not contain any git repositories")));
+
+        if repositories.is_empty() {
+            return Err(SkipStep(String::from("No repositories to pull or push")).into());
+        }
+
+        print_separator("Git repositories");
+        self.multi_pull(repositories, ctx)?;
+        self.multi_push(repositories, ctx)?;
+
+        Ok(())
     }
 
     pub fn multi_pull(&self, repositories: &Repositories, ctx: &ExecutionContext) -> Result<()> {
         let git = self.git.as_ref().unwrap();
 
-        if let RunType::Dry = ctx.run_type() {
+        if ctx.run_type().dry() {
             repositories
-                .repositories
+                .pull_repositories
                 .iter()
                 .for_each(|repo| println!("Would pull {}", &repo));
 
@@ -206,7 +254,7 @@ impl Git {
         }
 
         let futures_iterator = repositories
-            .repositories
+            .pull_repositories
             .iter()
             .filter(|repo| match has_remotes(git, repo) {
                 Some(false) => {
@@ -233,6 +281,47 @@ impl Git {
         let error = results.into_iter().find(|r| r.is_err());
         error.unwrap_or(Ok(()))
     }
+
+    pub fn multi_push(&self, repositories: &Repositories, ctx: &ExecutionContext) -> Result<()> {
+        let git = self.git.as_ref().unwrap();
+
+        if ctx.run_type().dry() {
+            repositories
+                .push_repositories
+                .iter()
+                .for_each(|repo| println!("Would push {}", &repo));
+
+            return Ok(());
+        }
+
+        let futures_iterator = repositories
+            .push_repositories
+            .iter()
+            .filter(|repo| match has_remotes(git, repo) {
+                Some(false) => {
+                    println!(
+                        "{} {} because it has no remotes",
+                        style("Skipping").yellow().bold(),
+                        repo
+                    );
+                    false
+                }
+                _ => true, // repo has remotes or command to check for remotes has failed. proceed to pull anyway.
+            })
+            .map(|repo| push_repository(repo.clone(), git, ctx));
+
+        let stream_of_futures = if let Some(limit) = ctx.config().git_concurrency_limit() {
+            iter(futures_iterator).buffer_unordered(limit).boxed()
+        } else {
+            futures_iterator.collect::<FuturesUnordered<_>>().boxed()
+        };
+
+        let basic_rt = runtime::Runtime::new()?;
+        let results = basic_rt.block_on(async { stream_of_futures.collect::<Vec<Result<()>>>().await });
+
+        let error = results.into_iter().find(|r| r.is_err());
+        error.unwrap_or(Ok(()))
+    }
 }
 
 impl<'a> Repositories<'a> {
@@ -245,22 +334,27 @@ impl<'a> Repositories<'a> {
 
         Self {
             git,
-            repositories: HashSet::new(),
             bad_patterns: Vec::new(),
             glob_match_options,
+            pull_repositories: HashSet::new(),
+            push_repositories: HashSet::new(),
         }
     }
 
-    pub fn insert_if_repo<P: AsRef<Path>>(&mut self, path: P) -> bool {
+    pub fn insert_if_repo<P: AsRef<Path>>(&mut self, path: P, action: GitAction) -> bool {
         if let Some(repo) = self.git.get_repo_root(path) {
-            self.repositories.insert(repo);
+            match action {
+                GitAction::Push => self.push_repositories.insert(repo),
+                GitAction::Pull => self.pull_repositories.insert(repo),
+            };
+
             true
         } else {
             false
         }
     }
 
-    pub fn glob_insert(&mut self, pattern: &str) {
+    pub fn glob_insert(&mut self, pattern: &str, action: GitAction) {
         if let Ok(glob) = glob_with(pattern, self.glob_match_options) {
             let mut last_git_repo: Option<PathBuf> = None;
             for entry in glob {
@@ -276,7 +370,7 @@ impl<'a> Repositories<'a> {
                                 continue;
                             }
                         }
-                        if self.insert_if_repo(&path) {
+                        if self.insert_if_repo(&path, action) {
                             last_git_repo = Some(path);
                         }
                     }
@@ -294,14 +388,27 @@ impl<'a> Repositories<'a> {
         }
     }
 
-    #[cfg(unix)]
+    /// Return true if `pull_repos` and `push_repos` are both empty.
     pub fn is_empty(&self) -> bool {
-        self.repositories.is_empty()
+        self.pull_repositories.is_empty() && self.push_repositories.is_empty()
+    }
+
+    // The following 2 functions are `#[cfg(unix)]` because they are only used in
+    // the `oh-my-zsh` step, which is UNIX-only.
+
+    #[cfg(unix)]
+    /// Return true if `pull_repos` is empty.
+    pub fn pull_is_empty(&self) -> bool {
+        self.pull_repositories.is_empty()
     }
 
     #[cfg(unix)]
-    pub fn remove(&mut self, path: &str) {
-        let _removed = self.repositories.remove(path);
+    /// Remove `path` from `pull_repos`
+    ///
+    /// # Panic
+    /// Will panic if `path` is not in the `pull_repos` under a debug build.
+    pub fn remove_from_pull(&mut self, path: &str) {
+        let _removed = self.pull_repositories.remove(path);
         debug_assert!(_removed);
     }
 }

src/steps/go.rs

@@ -0,0 +1,45 @@
+use std::path::PathBuf;
+use std::process::Command;
+
+use color_eyre::eyre::Result;
+
+use crate::command::CommandExt;
+use crate::execution_context::ExecutionContext;
+use crate::terminal::print_separator;
+use crate::utils;
+use crate::utils::PathExt;
+
+/// <https://github.com/Gelio/go-global-update>
+pub fn run_go_global_update(ctx: &ExecutionContext) -> Result<()> {
+    let go_global_update = require_go_bin("go-global-update")?;
+
+    print_separator("go-global-update");
+
+    ctx.run_type().execute(go_global_update).status_checked()
+}
+
+/// <https://github.com/nao1215/gup>
+pub fn run_go_gup(ctx: &ExecutionContext) -> Result<()> {
+    let gup = require_go_bin("gup")?;
+
+    print_separator("gup");
+
+    ctx.run_type().execute(gup).arg("update").status_checked()
+}
+
+/// Get the path of a Go binary.
+fn require_go_bin(name: &str) -> Result<PathBuf> {
+    utils::require(name).or_else(|_| {
+        let go = utils::require("go")?;
+        // TODO: Does this work? `go help gopath` says that:
+        // > The GOPATH environment variable lists places to look for Go code.
+        // > On Unix, the value is a colon-separated string.
+        // > On Windows, the value is a semicolon-separated string.
+        // > On Plan 9, the value is a list.
+        // Should we also fallback to the env variable?
+        let gopath_output = Command::new(go).args(["env", "GOPATH"]).output_checked_utf8()?;
+        let gopath = gopath_output.stdout.trim();
+
+        PathBuf::from(gopath).join("bin").join(name).require()
+    })
+}

src/steps/kakoune.rs

@@ -1,10 +1,8 @@
-use crate::error::TopgradeError;
 use crate::terminal::print_separator;
 use crate::utils::require;
-use anyhow::Result;
+use color_eyre::eyre::Result;
 
 use crate::execution_context::ExecutionContext;
-use crate::executor::ExecutorOutput;
 
 const UPGRADE_KAK: &str = include_str!("upgrade.kak");
 
@@ -13,19 +11,13 @@ pub fn upgrade_kak_plug(ctx: &ExecutionContext) -> Result<()> {
 
     print_separator("Kakoune");
 
-    let mut command = ctx.run_type().execute(kak);
-    command.args(["-ui", "dummy", "-e", UPGRADE_KAK]);
+    // TODO: Why supress output for this command?
+    ctx.run_type()
+        .execute(kak)
+        .args(["-ui", "dummy", "-e", UPGRADE_KAK])
+        .output()?;
 
-    let output = command.output()?;
-
-    if let ExecutorOutput::Wet(output) = output {
-        let status = output.status;
-        if !status.success() {
-            return Err(TopgradeError::ProcessFailed(status).into());
-        } else {
-            println!("Plugins upgraded")
-        }
-    }
+    println!("Plugins upgraded");
 
     Ok(())
 }

src/steps/mod.rs

@@ -2,6 +2,7 @@ pub mod containers;
 pub mod emacs;
 pub mod generic;
 pub mod git;
+pub mod go;
 pub mod kakoune;
 pub mod node;
 pub mod os;

src/steps/node.rs

@@ -1,19 +1,18 @@
-#![allow(unused_imports)]
-
 use std::fmt::Display;
-#[cfg(unix)]
-use std::os::unix::prelude::MetadataExt;
+#[cfg(target_os = "linux")]
+use std::os::unix::fs::MetadataExt;
 use std::path::PathBuf;
 use std::process::Command;
 
-use anyhow::Result;
-use directories::BaseDirs;
-use log::debug;
-#[cfg(unix)]
+use crate::utils::{require_option, REQUIRE_SUDO};
+use crate::HOME_DIR;
+use color_eyre::eyre::Result;
+#[cfg(target_os = "linux")]
 use nix::unistd::Uid;
 use semver::Version;
+use tracing::debug;
 
-use crate::executor::{CommandExt, RunType};
+use crate::command::CommandExt;
 use crate::terminal::print_separator;
 use crate::utils::{require, PathExt};
 use crate::{error::SkipStep, execution_context::ExecutionContext};
@@ -24,13 +23,6 @@ enum NPMVariant {
 }
 
 impl NPMVariant {
-    const fn long_name(&self) -> &str {
-        match self {
-            NPMVariant::Npm => "Node Package Manager",
-            NPMVariant::Pnpm => "PNPM",
-        }
-    }
-
     const fn short_name(&self) -> &str {
         match self {
             NPMVariant::Npm => "npm",
@@ -85,25 +77,29 @@ impl NPM {
         let args = ["root", self.global_location_arg()];
         Command::new(&self.command)
             .args(args)
-            .check_output()
-            .map(|s| PathBuf::from(s.trim()))
+            .output_checked_utf8()
+            .map(|s| PathBuf::from(s.stdout.trim()))
     }
 
     fn version(&self) -> Result<Version> {
         let version_str = Command::new(&self.command)
             .args(["--version"])
-            .check_output()
-            .map(|s| s.trim().to_owned());
+            .output_checked_utf8()
+            .map(|s| s.stdout.trim().to_owned());
         Version::parse(&version_str?).map_err(|err| err.into())
     }
 
-    fn upgrade(&self, run_type: RunType, use_sudo: bool) -> Result<()> {
-        print_separator(self.variant.long_name());
+    fn upgrade(&self, ctx: &ExecutionContext, use_sudo: bool) -> Result<()> {
         let args = ["update", self.global_location_arg()];
         if use_sudo {
-            run_type.execute("sudo").args(args).check_run()?;
+            let sudo = require_option(ctx.sudo().clone(), REQUIRE_SUDO.to_string())?;
+            ctx.run_type()
+                .execute(sudo)
+                .arg(&self.command)
+                .args(args)
+                .status_checked()?;
         } else {
-            run_type.execute(&self.command).args(args).check_run()?;
+            ctx.run_type().execute(&self.command).args(args).status_checked()?;
         }
 
         Ok(())
@@ -142,9 +138,9 @@ impl Yarn {
         //
         // As “yarn dlx” don't need to “upgrade”, we
         // ignore the whole task if Yarn is 2.x or above.
-        let version = Command::new(&self.command).args(["--version"]).check_output();
+        let version = Command::new(&self.command).args(["--version"]).output_checked_utf8();
 
-        matches!(version, Ok(ver) if ver.starts_with('1') || ver.starts_with('0'))
+        matches!(version, Ok(ver) if ver.stdout.starts_with('1') || ver.stdout.starts_with('0'))
     }
 
     #[cfg(target_os = "linux")]
@@ -152,22 +148,22 @@ impl Yarn {
         let args = ["global", "dir"];
         Command::new(&self.command)
             .args(args)
-            .check_output()
-            .map(|s| PathBuf::from(s.trim()))
+            .output_checked_utf8()
+            .map(|s| PathBuf::from(s.stdout.trim()))
     }
 
-    fn upgrade(&self, run_type: RunType, use_sudo: bool) -> Result<()> {
-        print_separator("Yarn Package Manager");
+    fn upgrade(&self, ctx: &ExecutionContext, use_sudo: bool) -> Result<()> {
         let args = ["global", "upgrade"];
 
         if use_sudo {
-            run_type
-                .execute("sudo")
+            let sudo = require_option(ctx.sudo().clone(), REQUIRE_SUDO.to_string())?;
+            ctx.run_type()
+                .execute(sudo)
                 .arg(self.yarn.as_ref().unwrap_or(&self.command))
                 .args(args)
-                .check_run()?;
+                .status_checked()?;
         } else {
-            run_type.execute(&self.command).args(args).check_run()?;
+            ctx.run_type().execute(&self.command).args(args).status_checked()?;
         }
 
         Ok(())
@@ -218,28 +214,32 @@ fn should_use_sudo_yarn(yarn: &Yarn, ctx: &ExecutionContext) -> Result<bool> {
 pub fn run_npm_upgrade(ctx: &ExecutionContext) -> Result<()> {
     let npm = require("npm").map(|b| NPM::new(b, NPMVariant::Npm))?;
 
+    print_separator("Node Package Manager");
+
     #[cfg(target_os = "linux")]
     {
-        npm.upgrade(ctx.run_type(), should_use_sudo(&npm, ctx)?)
+        npm.upgrade(ctx, should_use_sudo(&npm, ctx)?)
     }
 
     #[cfg(not(target_os = "linux"))]
     {
-        npm.upgrade(ctx.run_type(), false)
+        npm.upgrade(ctx, false)
     }
 }
 
 pub fn run_pnpm_upgrade(ctx: &ExecutionContext) -> Result<()> {
     let pnpm = require("pnpm").map(|b| NPM::new(b, NPMVariant::Pnpm))?;
 
+    print_separator("Performant Node Package Manager");
+
     #[cfg(target_os = "linux")]
     {
-        pnpm.upgrade(ctx.run_type(), should_use_sudo(&pnpm, ctx)?)
+        pnpm.upgrade(ctx, should_use_sudo(&pnpm, ctx)?)
     }
 
     #[cfg(not(target_os = "linux"))]
     {
-        pnpm.upgrade(ctx.run_type(), false)
+        pnpm.upgrade(ctx, false)
     }
 }
 
@@ -251,20 +251,22 @@ pub fn run_yarn_upgrade(ctx: &ExecutionContext) -> Result<()> {
         return Ok(());
     }
 
+    print_separator("Yarn Package Manager");
+
     #[cfg(target_os = "linux")]
     {
-        yarn.upgrade(ctx.run_type(), should_use_sudo_yarn(&yarn, ctx)?)
+        yarn.upgrade(ctx, should_use_sudo_yarn(&yarn, ctx)?)
     }
 
     #[cfg(not(target_os = "linux"))]
     {
-        yarn.upgrade(ctx.run_type(), false)
+        yarn.upgrade(ctx, false)
     }
 }
 
 pub fn deno_upgrade(ctx: &ExecutionContext) -> Result<()> {
     let deno = require("deno")?;
-    let deno_dir = ctx.base_dirs().home_dir().join(".deno");
+    let deno_dir = HOME_DIR.join(".deno");
 
     if !deno.canonicalize()?.is_descendant_of(&deno_dir) {
         let skip_reason = SkipStep("Deno installed outside of .deno directory".to_string());
@@ -272,5 +274,5 @@ pub fn deno_upgrade(ctx: &ExecutionContext) -> Result<()> {
     }
 
     print_separator("Deno");
-    ctx.run_type().execute(&deno).arg("upgrade").check_run()
+    ctx.run_type().execute(&deno).arg("upgrade").status_checked()
 }

src/steps/os/android.rs

@@ -1,8 +1,10 @@
+use crate::command::CommandExt;
 use crate::execution_context::ExecutionContext;
 use crate::terminal::print_separator;
 use crate::utils::require;
+use crate::utils::which;
 use crate::Step;
-use anyhow::Result;
+use color_eyre::eyre::Result;
 
 pub fn upgrade_packages(ctx: &ExecutionContext) -> Result<()> {
     //let pkg = require("pkg")?;
@@ -10,7 +12,7 @@ pub fn upgrade_packages(ctx: &ExecutionContext) -> Result<()> {
 
     print_separator("Termux Packages");
 
-    let is_nala = pkg.end_with("nala");
+    let is_nala = pkg.ends_with("nala");
 
     let mut command = ctx.run_type().execute(&pkg);
     command.arg("upgrade");
@@ -18,20 +20,18 @@ pub fn upgrade_packages(ctx: &ExecutionContext) -> Result<()> {
     if ctx.config().yes(Step::System) {
         command.arg("-y");
     }
-    command.check_run()?;
+    command.status_checked()?;
 
-    if !is_nala {
-        if ctx.config().cleanup() {
-            ctx.run_type().execute(&pkg).arg("clean").check_run()?;
+    if !is_nala && ctx.config().cleanup() {
+        ctx.run_type().execute(&pkg).arg("clean").status_checked()?;
 
         let apt = require("apt")?;
-            let mut command = ctx.run_type().execute(&apt);
+        let mut command = ctx.run_type().execute(apt);
         command.arg("autoremove");
         if ctx.config().yes(Step::System) {
             command.arg("-y");
         }
-            command.check_run()?;
-        }
+        command.status_checked()?;
     }
 
     Ok(())

src/steps/os/archlinux.rs

@@ -1,13 +1,15 @@
 use std::env::var_os;
 use std::ffi::OsString;
 use std::path::{Path, PathBuf};
-use std::process::Command;
 
-use anyhow::Result;
+use color_eyre::eyre;
+use color_eyre::eyre::Result;
 use walkdir::WalkDir;
 
+use crate::command::CommandExt;
 use crate::error::TopgradeError;
 use crate::execution_context::ExecutionContext;
+use crate::sudo::Sudo;
 use crate::utils::which;
 use crate::{config, Step};
 
@@ -29,11 +31,10 @@ pub struct YayParu {
 impl ArchPackageManager for YayParu {
     fn upgrade(&self, ctx: &ExecutionContext) -> Result<()> {
         if ctx.config().show_arch_news() {
-            Command::new(&self.executable)
+            ctx.run_type()
+                .execute(&self.executable)
                 .arg("-Pw")
-                .spawn()
-                .and_then(|mut p| p.wait())
-                .ok();
+                .status_checked_with_codes(&[1, 0])?;
         }
 
         let mut command = ctx.run_type().execute(&self.executable);
@@ -48,7 +49,7 @@ impl ArchPackageManager for YayParu {
         if ctx.config().yes(Step::System) {
             command.arg("--noconfirm");
         }
-        command.check_run()?;
+        command.status_checked()?;
 
         if ctx.config().cleanup() {
             let mut command = ctx.run_type().execute(&self.executable);
@@ -56,7 +57,7 @@ impl ArchPackageManager for YayParu {
             if ctx.config().yes(Step::System) {
                 command.arg("--noconfirm");
             }
-            command.check_run()?;
+            command.status_checked()?;
         }
 
         Ok(())
@@ -72,6 +73,37 @@ impl YayParu {
     }
 }
 
+pub struct GarudaUpdate {
+    executable: PathBuf,
+}
+
+impl ArchPackageManager for GarudaUpdate {
+    fn upgrade(&self, ctx: &ExecutionContext) -> Result<()> {
+        let mut command = ctx.run_type().execute(&self.executable);
+
+        command
+            .env("PATH", get_execution_path())
+            .env("UPDATE_AUR", "1")
+            .env("SKIP_MIRRORLIST", "1");
+
+        if ctx.config().yes(Step::System) {
+            command.env("PACMAN_NOCONFIRM", "1");
+        }
+        command.args(ctx.config().garuda_update_arguments().split_whitespace());
+        command.status_checked()?;
+
+        Ok(())
+    }
+}
+
+impl GarudaUpdate {
+    fn get() -> Option<Self> {
+        Some(Self {
+            executable: which("garuda-update")?,
+        })
+    }
+}
+
 pub struct Trizen {
     executable: PathBuf,
 }
@@ -88,7 +120,7 @@ impl ArchPackageManager for Trizen {
         if ctx.config().yes(Step::System) {
             command.arg("--noconfirm");
         }
-        command.check_run()?;
+        command.status_checked()?;
 
         if ctx.config().cleanup() {
             let mut command = ctx.run_type().execute(&self.executable);
@@ -96,7 +128,7 @@ impl ArchPackageManager for Trizen {
             if ctx.config().yes(Step::System) {
                 command.arg("--noconfirm");
             }
-            command.check_run()?;
+            command.status_checked()?;
         }
 
         Ok(())
@@ -112,7 +144,7 @@ impl Trizen {
 }
 
 pub struct Pacman {
-    sudo: PathBuf,
+    sudo: Sudo,
     executable: PathBuf,
 }
 
@@ -126,7 +158,7 @@ impl ArchPackageManager for Pacman {
         if ctx.config().yes(Step::System) {
             command.arg("--noconfirm");
         }
-        command.check_run()?;
+        command.status_checked()?;
 
         if ctx.config().cleanup() {
             let mut command = ctx.run_type().execute(&self.sudo);
@@ -134,7 +166,7 @@ impl ArchPackageManager for Pacman {
             if ctx.config().yes(Step::System) {
                 command.arg("--noconfirm");
             }
-            command.check_run()?;
+            command.status_checked()?;
         }
 
         Ok(())
@@ -175,7 +207,7 @@ impl ArchPackageManager for Pikaur {
             command.arg("--noconfirm");
         }
 
-        command.check_run()?;
+        command.status_checked()?;
 
         if ctx.config().cleanup() {
             let mut command = ctx.run_type().execute(&self.executable);
@@ -183,7 +215,7 @@ impl ArchPackageManager for Pikaur {
             if ctx.config().yes(Step::System) {
                 command.arg("--noconfirm");
             }
-            command.check_run()?;
+            command.status_checked()?;
         }
 
         Ok(())
@@ -214,7 +246,7 @@ impl ArchPackageManager for Pamac {
             command.arg("--no-confirm");
         }
 
-        command.check_run()?;
+        command.status_checked()?;
 
         if ctx.config().cleanup() {
             let mut command = ctx.run_type().execute(&self.executable);
@@ -222,7 +254,7 @@ impl ArchPackageManager for Pamac {
             if ctx.config().yes(Step::System) {
                 command.arg("--no-confirm");
             }
-            command.check_run()?;
+            command.status_checked()?;
         }
 
         Ok(())
@@ -231,7 +263,7 @@ impl ArchPackageManager for Pamac {
 
 pub struct Aura {
     executable: PathBuf,
-    sudo: PathBuf,
+    sudo: Sudo,
 }
 
 impl Aura {
@@ -245,7 +277,7 @@ impl Aura {
 
 impl ArchPackageManager for Aura {
     fn upgrade(&self, ctx: &ExecutionContext) -> Result<()> {
-        let sudo = which("sudo").unwrap_or_else(PathBuf::new);
+        let sudo = which("sudo").unwrap_or_default();
         let mut aur_update = ctx.run_type().execute(&sudo);
 
         if sudo.ends_with("sudo") {
@@ -257,7 +289,7 @@ impl ArchPackageManager for Aura {
                 aur_update.arg("--noconfirm");
             }
 
-            aur_update.check_run()?;
+            aur_update.status_checked()?;
         } else {
             println!("Aura requires sudo installed to work with AUR packages")
         }
@@ -270,7 +302,7 @@ impl ArchPackageManager for Aura {
         if ctx.config().yes(Step::System) {
             pacman_update.arg("--noconfirm");
         }
-        pacman_update.check_run()?;
+        pacman_update.status_checked()?;
 
         Ok(())
     }
@@ -284,14 +316,16 @@ pub fn get_arch_package_manager(ctx: &ExecutionContext) -> Option<Box<dyn ArchPa
     let pacman = which("powerpill").unwrap_or_else(|| PathBuf::from("pacman"));
 
     match ctx.config().arch_package_manager() {
-        config::ArchPackageManager::Autodetect => YayParu::get("paru", &pacman)
+        config::ArchPackageManager::Autodetect => GarudaUpdate::get()
             .map(box_package_manager)
+            .or_else(|| YayParu::get("paru", &pacman).map(box_package_manager))
             .or_else(|| YayParu::get("yay", &pacman).map(box_package_manager))
             .or_else(|| Trizen::get().map(box_package_manager))
             .or_else(|| Pikaur::get().map(box_package_manager))
             .or_else(|| Pamac::get().map(box_package_manager))
             .or_else(|| Pacman::get(ctx).map(box_package_manager))
             .or_else(|| Aura::get(ctx).map(box_package_manager)),
+        config::ArchPackageManager::GarudaUpdate => GarudaUpdate::get().map(box_package_manager),
         config::ArchPackageManager::Trizen => Trizen::get().map(box_package_manager),
         config::ArchPackageManager::Paru => YayParu::get("paru", &pacman).map(box_package_manager),
         config::ArchPackageManager::Yay => YayParu::get("yay", &pacman).map(box_package_manager),
@@ -304,7 +338,7 @@ pub fn get_arch_package_manager(ctx: &ExecutionContext) -> Option<Box<dyn ArchPa
 
 pub fn upgrade_arch_linux(ctx: &ExecutionContext) -> Result<()> {
     let package_manager =
-        get_arch_package_manager(ctx).ok_or_else(|| anyhow::Error::from(TopgradeError::FailedGettingPackageManager))?;
+        get_arch_package_manager(ctx).ok_or_else(|| eyre::Report::from(TopgradeError::FailedGettingPackageManager))?;
     package_manager.upgrade(ctx)
 }
 

src/steps/os/dragonfly.rs

@@ -1,26 +1,32 @@
-use crate::executor::RunType;
+use crate::command::CommandExt;
+use crate::execution_context::ExecutionContext;
 use crate::terminal::print_separator;
-use crate::utils::require_option;
-use anyhow::Result;
-use std::path::PathBuf;
+use crate::utils::{require_option, REQUIRE_SUDO};
+use crate::Step;
+use color_eyre::eyre::Result;
 use std::process::Command;
 
-pub fn upgrade_packages(sudo: Option<&PathBuf>, run_type: RunType) -> Result<()> {
-    let sudo = require_option(sudo, String::from("No sudo detected"))?;
-    print_separator("DrgaonFly BSD Packages");
-    run_type
-        .execute(sudo)
-        .args(&["/usr/local/sbin/pkg", "upgrade"])
-        .check_run()
+pub fn upgrade_packages(ctx: &ExecutionContext) -> Result<()> {
+    let sudo = require_option(ctx.sudo().as_ref(), REQUIRE_SUDO.to_string())?;
+    print_separator("DragonFly BSD Packages");
+    let mut cmd = ctx.run_type().execute(sudo);
+    cmd.args(["/usr/local/sbin/pkg", "upgrade"]);
+    if ctx.config().yes(Step::System) {
+        cmd.arg("-y");
+    }
+    cmd.status_checked()
 }
 
-pub fn audit_packages(sudo: &Option<PathBuf>) -> Result<()> {
-    if let Some(sudo) = sudo {
+pub fn audit_packages(ctx: &ExecutionContext) -> Result<()> {
+    let sudo = require_option(ctx.sudo().as_ref(), REQUIRE_SUDO.to_string())?;
     println!();
-        Command::new(sudo)
-            .args(&["/usr/local/sbin/pkg", "audit", "-Fr"])
-            .spawn()?
-            .wait()?;
+    #[allow(clippy::disallowed_methods)]
+    if !Command::new(sudo)
+        .args(["/usr/local/sbin/pkg", "audit", "-Fr"])
+        .status()?
+        .success()
+    {
+        println!("The package audit was successful, but vulnerable packages still remain on the system");
     }
     Ok(())
 }

src/steps/os/freebsd.rs

@@ -1,32 +1,38 @@
-use crate::executor::RunType;
+use crate::command::CommandExt;
+use crate::execution_context::ExecutionContext;
 use crate::terminal::print_separator;
-use crate::utils::require_option;
-use anyhow::Result;
-use std::path::PathBuf;
+use crate::utils::{require_option, REQUIRE_SUDO};
+use crate::Step;
+use color_eyre::eyre::Result;
 use std::process::Command;
 
-pub fn upgrade_freebsd(sudo: Option<&PathBuf>, run_type: RunType) -> Result<()> {
-    let sudo = require_option(sudo, String::from("No sudo detected"))?;
+pub fn upgrade_freebsd(ctx: &ExecutionContext) -> Result<()> {
+    let sudo = require_option(ctx.sudo().as_ref(), REQUIRE_SUDO.to_string())?;
     print_separator("FreeBSD Update");
-    run_type
+    ctx.run_type()
         .execute(sudo)
-        .args(&["/usr/sbin/freebsd-update", "fetch", "install"])
-        .check_run()
+        .args(["/usr/sbin/freebsd-update", "fetch", "install"])
+        .status_checked()
 }
 
-pub fn upgrade_packages(sudo: Option<&PathBuf>, run_type: RunType) -> Result<()> {
-    let sudo = require_option(sudo, String::from("No sudo detected"))?;
+pub fn upgrade_packages(ctx: &ExecutionContext) -> Result<()> {
+    let sudo = require_option(ctx.sudo().as_ref(), REQUIRE_SUDO.to_string())?;
     print_separator("FreeBSD Packages");
-    run_type.execute(sudo).args(&["/usr/sbin/pkg", "upgrade"]).check_run()
+
+    let mut command = ctx.run_type().execute(sudo);
+
+    command.args(["/usr/sbin/pkg", "upgrade"]);
+    if ctx.config().yes(Step::System) {
+        command.arg("-y");
+    }
+    command.status_checked()
 }
 
-pub fn audit_packages(sudo: &Option<PathBuf>) -> Result<()> {
-    if let Some(sudo) = sudo {
+pub fn audit_packages(ctx: &ExecutionContext) -> Result<()> {
+    let sudo = require_option(ctx.sudo().as_ref(), REQUIRE_SUDO.to_string())?;
     println!();
     Command::new(sudo)
-            .args(&["/usr/sbin/pkg", "audit", "-Fr"])
-            .spawn()?
-            .wait()?;
-    }
+        .args(["/usr/sbin/pkg", "audit", "-Fr"])
+        .status_checked()?;
     Ok(())
 }

src/steps/os/macos.rs

@@ -1,36 +1,41 @@
+use crate::command::CommandExt;
 use crate::execution_context::ExecutionContext;
-use crate::executor::{CommandExt, RunType};
 use crate::terminal::{print_separator, prompt_yesno};
-use crate::{error::TopgradeError, utils::require, Step};
-use anyhow::Result;
-use log::debug;
+use crate::utils::{require_option, REQUIRE_SUDO};
+use crate::{utils::require, Step};
+use color_eyre::eyre::Result;
 use std::fs;
 use std::process::Command;
+use tracing::debug;
 
 pub fn run_macports(ctx: &ExecutionContext) -> Result<()> {
     require("port")?;
-    let sudo = ctx.sudo().as_ref().unwrap();
+    let sudo = require_option(ctx.sudo().as_ref(), REQUIRE_SUDO.to_string())?;
+
     print_separator("MacPorts");
-    ctx.run_type().execute(sudo).args(["port", "selfupdate"]).check_run()?;
+    ctx.run_type()
+        .execute(sudo)
+        .args(["port", "selfupdate"])
+        .status_checked()?;
     ctx.run_type()
         .execute(sudo)
         .args(["port", "-u", "upgrade", "outdated"])
-        .check_run()?;
+        .status_checked()?;
     if ctx.config().cleanup() {
         ctx.run_type()
             .execute(sudo)
             .args(["port", "-N", "reclaim"])
-            .check_run()?;
+            .status_checked()?;
     }
 
     Ok(())
 }
 
-pub fn run_mas(run_type: RunType) -> Result<()> {
+pub fn run_mas(ctx: &ExecutionContext) -> Result<()> {
     let mas = require("mas")?;
     print_separator("macOS App Store");
 
-    run_type.execute(mas).arg("upgrade").check_run()
+    ctx.run_type().execute(mas).arg("upgrade").status_checked()
 }
 
 pub fn upgrade_macos(ctx: &ExecutionContext) -> Result<()> {
@@ -58,20 +63,15 @@ pub fn upgrade_macos(ctx: &ExecutionContext) -> Result<()> {
         command.arg("--no-scan");
     }
 
-    command.check_run()
+    command.status_checked()
 }
 
 fn system_update_available() -> Result<bool> {
-    let output = Command::new("softwareupdate").arg("--list").output()?;
+    let output = Command::new("softwareupdate").arg("--list").output_checked_utf8()?;
+
     debug!("{:?}", output);
 
-    let status = output.status;
-    if !status.success() {
-        return Err(TopgradeError::ProcessFailed(status).into());
-    }
-    let string_output = String::from_utf8(output.stderr)?;
-    debug!("{:?}", string_output);
-    Ok(!string_output.contains("No new software available"))
+    Ok(!output.stderr.contains("No new software available"))
 }
 
 pub fn run_sparkle(ctx: &ExecutionContext) -> Result<()> {
@@ -83,12 +83,12 @@ pub fn run_sparkle(ctx: &ExecutionContext) -> Result<()> {
         let probe = Command::new(&sparkle)
             .args(["--probe", "--application"])
             .arg(application.path())
-            .check_output();
+            .output_checked_utf8();
         if probe.is_ok() {
             let mut command = ctx.run_type().execute(&sparkle);
             command.args(["bundle", "--check-immediately", "--application"]);
             command.arg(application.path());
-            command.spawn()?.wait()?;
+            command.status_checked()?;
         }
     }
     Ok(())

src/steps/os/openbsd.rs

@@ -1,17 +1,23 @@
-use crate::executor::RunType;
+use crate::execution_context::ExecutionContext;
 use crate::terminal::print_separator;
-use crate::utils::require_option;
-use anyhow::Result;
+use crate::utils::{require_option, REQUIRE_SUDO};
+use color_eyre::eyre::Result;
 use std::path::PathBuf;
 
-pub fn upgrade_openbsd(sudo: Option<&PathBuf>, run_type: RunType) -> Result<()> {
-    let sudo = require_option(sudo, String::from("No sudo detected"))?;
+pub fn upgrade_openbsd(ctx: &ExecutionContext) -> Result<()> {
+    let sudo = require_option(ctx.sudo().as_ref(), REQUIRE_SUDO.to_string())?;
     print_separator("OpenBSD Update");
-    run_type.execute(sudo).args(&["/usr/sbin/sysupgrade", "-n"]).check_run()
+    ctx.run_type()
+        .execute(sudo)
+        .args(&["/usr/sbin/sysupgrade", "-n"])
+        .status_checked()
 }
 
-pub fn upgrade_packages(sudo: Option<&PathBuf>, run_type: RunType) -> Result<()> {
-    let sudo = require_option(sudo, String::from("No sudo detected"))?;
+pub fn upgrade_packages(ctx: &ExecutionContext) -> Result<()> {
+    let sudo = require_option(ctx.sudo().as_ref(), REQUIRE_SUDO.to_string())?;
     print_separator("OpenBSD Packages");
-    run_type.execute(sudo).args(&["/usr/sbin/pkg_add", "-u"]).check_run()
+    ctx.run_type()
+        .execute(sudo)
+        .args(&["/usr/sbin/pkg_add", "-u"])
+        .status_checked()
 }

src/steps/os/os_release/anarchy

@@ -1,6 +0,0 @@
-NAME="Anarchy Linux"
-PRETTY_NAME="Anarchy Linux"
-ID=anarchy
-ID_LIKE=anarchylinux
-ANSI_COLOR="0;36"
-HOME_URL="https://anarchylinux.org/"

src/steps/os/os_release/antergos

@@ -1,10 +0,0 @@
-NAME="Antergos Linux"
-VERSION="18.7-ISO-Rolling"
-ID="antergos"
-ID_LIKE="arch"
-PRETTY_NAME="Antergos Linux"
-CPE_NAME="cpe:/o:antergosproject:antergos:18.7"
-ANSI_COLOR="1;34;40"
-HOME_URL="antergos.com"
-SUPPORT_URL="forum.antergos.com"
-BUG_REPORT_URL="@antergos"

src/steps/os/os_release/deepin

@@ -0,0 +1,8 @@
+PRETTY_NAME="Deepin 20.9"
+NAME="Deepin"
+VERSION_ID="20.9"
+VERSION="20.9"
+VERSION_CODENAME="apricot"
+ID=Deepin
+HOME_URL="https://www.deepin.org/"
+BUG_REPORT_URL="https://bbs.deepin.org/"

src/steps/os/os_release/pclinuxos

@@ -0,0 +1,9 @@
+NAME="PCLinuxOS"
+VERSION="2022"
+ID=pclinuxos
+VERSION_ID=2022
+ID_LIKE="mandriva"
+PRETTY_NAME="PCLinuxOS 2022"
+ANSI_COLOR="1;37"
+HOME_URL="http://www.pclinuxos.com/"
+SUPPORT_URL="http://www.pclinuxos.com/"

src/steps/os/os_release/solus

@@ -0,0 +1,11 @@
+NAME="Solus"
+VERSION="4.4"
+ID="solus"
+VERSION_CODENAME=harmony
+VERSION_ID="4.4"
+PRETTY_NAME="Solus 4.4 Harmony"
+ANSI_COLOR="1;34"
+HOME_URL="https://getsol.us"
+SUPPORT_URL="https://help.getsol.us/docs/user/contributing/getting-involved"
+BUG_REPORT_URL="https://dev.getsol.us/"
+LOGO="distributor-logo-solus"

src/steps/os/os_release/vanilla

@@ -0,0 +1,12 @@
+PRETTY_NAME="VanillaOS 22.10 all"
+NAME="VanillaOS"
+VERSION_ID="22.10"
+VERSION="22.10 all"
+VERSION_CODENAME="kinetic"
+ID=ubuntu
+ID_LIKE=debian
+HOME_URL="https://github.com/vanilla-os"
+SUPPORT_URL="https://github.com/vanilla-os"
+BUG_REPORT_URL="https://github.com/vanilla-os"
+PRIVACY_POLICY_URL="https://www.ubuntu.com/legal/terms-and-policies/privacy-policy"
+UBUNTU_CODENAME="kinetic"

src/steps/os/unix.rs

@@ -1,33 +1,43 @@
-use crate::error::{SkipStep, TopgradeError};
-use crate::execution_context::ExecutionContext;
-use crate::executor::{CommandExt, Executor, ExecutorExitStatus, RunType};
-use crate::terminal::print_separator;
-#[cfg(not(target_os = "macos"))]
-use crate::utils::require_option;
-use crate::utils::{require, PathExt};
-use crate::Step;
-use anyhow::Result;
-use directories::BaseDirs;
-use home;
-use ini::Ini;
-use log::debug;
 use std::fs;
 use std::os::unix::fs::MetadataExt;
 use std::path::PathBuf;
 use std::process::Command;
-use std::{env, path::Path};
+use std::{env::var, path::Path};
 
+use crate::command::CommandExt;
+use crate::{Step, HOME_DIR};
+use color_eyre::eyre::Result;
+use home;
+use ini::Ini;
+use tracing::debug;
+
+#[cfg(target_os = "linux")]
+use super::linux::Distribution;
+use crate::error::SkipStep;
+use crate::execution_context::ExecutionContext;
+#[cfg(any(target_os = "linux", target_os = "macos"))]
+use crate::executor::Executor;
+#[cfg(any(target_os = "linux", target_os = "macos"))]
+use crate::executor::RunType;
+use crate::terminal::print_separator;
+use crate::utils::{require, require_option, PathExt, REQUIRE_SUDO};
+
+#[cfg(any(target_os = "linux", target_os = "macos"))]
 const INTEL_BREW: &str = "/usr/local/bin/brew";
+
+#[cfg(any(target_os = "linux", target_os = "macos"))]
 const ARM_BREW: &str = "/opt/homebrew/bin/brew";
 
 #[derive(Copy, Clone, Debug)]
 #[allow(dead_code)]
+#[cfg(any(target_os = "linux", target_os = "macos"))]
 pub enum BrewVariant {
     Path,
     MacIntel,
     MacArm,
 }
 
+#[cfg(any(target_os = "linux", target_os = "macos"))]
 impl BrewVariant {
     fn binary_name(self) -> &'static str {
         match self {
@@ -77,84 +87,123 @@ impl BrewVariant {
     }
 }
 
-pub fn run_fisher(base_dirs: &BaseDirs, run_type: RunType) -> Result<()> {
+pub fn run_fisher(ctx: &ExecutionContext) -> Result<()> {
     let fish = require("fish")?;
 
-    if env::var("fisher_path").is_err() {
-        base_dirs
-            .home_dir()
-            .join(".config/fish/functions/fisher.fish")
-            .require()?;
-    }
+    Command::new(&fish)
+        .args(["-c", "type -t fisher"])
+        .output_checked_utf8()
+        .map(|_| ())
+        .map_err(|_| SkipStep("`fisher` is not defined in `fish`".to_owned()))?;
+
+    Command::new(&fish)
+        .args(["-c", "echo \"$__fish_config_dir/fish_plugins\""])
+        .output_checked_utf8()
+        .and_then(|output| Path::new(&output.stdout.trim()).require().map(|_| ()))
+        .map_err(|err| SkipStep(format!("`fish_plugins` path doesn't exist: {err}")))?;
+
+    Command::new(&fish)
+        .args(["-c", "fish_update_completions"])
+        .output_checked_utf8()
+        .map(|_| ())
+        .map_err(|_| SkipStep("`fish_update_completions` is not available".to_owned()))?;
 
     print_separator("Fisher");
 
-    let version_str = run_type
+    let version_str = ctx
+        .run_type()
         .execute(&fish)
         .args(["-c", "fisher --version"])
-        .check_output()?;
+        .output_checked_utf8()?
+        .stdout;
     debug!("Fisher version: {}", version_str);
 
     if version_str.starts_with("fisher version 3.") {
         // v3 - see https://github.com/topgrade-rs/topgrade/pull/37#issuecomment-1283844506
-        run_type.execute(&fish).args(["-c", "fisher"]).check_run()
+        ctx.run_type().execute(&fish).args(["-c", "fisher"]).status_checked()
     } else {
         // v4
-        run_type.execute(&fish).args(["-c", "fisher update"]).check_run()
+        ctx.run_type()
+            .execute(&fish)
+            .args(["-c", "fisher update"])
+            .status_checked()
     }
 }
 
 pub fn run_bashit(ctx: &ExecutionContext) -> Result<()> {
-    ctx.base_dirs().home_dir().join(".bash_it").require()?;
+    HOME_DIR.join(".bash_it").require()?;
 
     print_separator("Bash-it");
 
     ctx.run_type()
         .execute("bash")
         .args(["-lic", &format!("bash-it update {}", ctx.config().bashit_branch())])
-        .check_run()
+        .status_checked()
+}
+
+pub fn run_oh_my_bash(ctx: &ExecutionContext) -> Result<()> {
+    require("bash")?;
+    let oh_my_bash = var("OSH")
+        // default to `~/.oh-my-bash`
+        .unwrap_or(
+            HOME_DIR
+                .join(".oh-my-bash")
+                .to_str()
+                .expect("should be UTF-8 encoded")
+                .to_string(),
+        )
+        .require()?;
+
+    print_separator("oh-my-bash");
+
+    let mut update_script = oh_my_bash;
+    update_script.push_str("/tools/upgrade.sh");
+
+    ctx.run_type().execute("bash").arg(update_script).status_checked()
 }
 
 pub fn run_oh_my_fish(ctx: &ExecutionContext) -> Result<()> {
     let fish = require("fish")?;
-    ctx.base_dirs()
-        .home_dir()
-        .join(".local/share/omf/pkg/omf/functions/omf.fish")
-        .require()?;
+    HOME_DIR.join(".local/share/omf/pkg/omf/functions/omf.fish").require()?;
 
     print_separator("oh-my-fish");
 
-    ctx.run_type().execute(fish).args(["-c", "omf update"]).check_run()
+    ctx.run_type().execute(fish).args(["-c", "omf update"]).status_checked()
 }
 
 pub fn run_pkgin(ctx: &ExecutionContext) -> Result<()> {
     let pkgin = require("pkgin")?;
+    let sudo = require_option(ctx.sudo().as_ref(), REQUIRE_SUDO.to_string())?;
 
-    let mut command = ctx.run_type().execute(ctx.sudo().as_ref().unwrap());
+    print_separator("Pkgin");
+
+    let mut command = ctx.run_type().execute(sudo);
     command.arg(&pkgin).arg("update");
     if ctx.config().yes(Step::Pkgin) {
         command.arg("-y");
     }
-    command.check_run()?;
+    command.status_checked()?;
 
-    let mut command = ctx.run_type().execute(ctx.sudo().as_ref().unwrap());
+    let mut command = ctx.run_type().execute(sudo);
     command.arg(&pkgin).arg("upgrade");
     if ctx.config().yes(Step::Pkgin) {
         command.arg("-y");
     }
-    command.check_run()
+    command.status_checked()
 }
 
 pub fn run_fish_plug(ctx: &ExecutionContext) -> Result<()> {
     let fish = require("fish")?;
-    ctx.base_dirs()
-        .home_dir()
+    HOME_DIR
         .join(".local/share/fish/plug/kidonng/fish-plug/functions/plug.fish")
         .require()?;
 
     print_separator("fish-plug");
 
-    ctx.run_type().execute(fish).args(["-c", "plug update"]).check_run()
+    ctx.run_type()
+        .execute(fish)
+        .args(["-c", "plug update"])
+        .status_checked()
 }
 
 /// Upgrades `fundle` and `fundle` plugins.
@@ -164,21 +213,21 @@ pub fn run_fish_plug(ctx: &ExecutionContext) -> Result<()> {
 /// See: <https://github.com/danhper/fundle>
 pub fn run_fundle(ctx: &ExecutionContext) -> Result<()> {
     let fish = require("fish")?;
-    ctx.base_dirs().home_dir().join(".config/fish/fundle").require()?;
+    HOME_DIR.join(".config/fish/fundle").require()?;
 
     print_separator("fundle");
 
     ctx.run_type()
         .execute(fish)
         .args(["-c", "fundle self-update && fundle update"])
-        .check_run()
+        .status_checked()
 }
 
 #[cfg(not(any(target_os = "android", target_os = "macos")))]
 pub fn upgrade_gnome_extensions(ctx: &ExecutionContext) -> Result<()> {
     let gdbus = require("gdbus")?;
     require_option(
-        env::var("XDG_CURRENT_DESKTOP").ok().filter(|p| p.contains("GNOME")),
+        var("XDG_CURRENT_DESKTOP").ok().filter(|p| p.contains("GNOME")),
         "Desktop doest not appear to be gnome".to_string(),
     )?;
     let output = Command::new("gdbus")
@@ -192,10 +241,10 @@ pub fn upgrade_gnome_extensions(ctx: &ExecutionContext) -> Result<()> {
             "--method",
             "org.freedesktop.DBus.ListActivatableNames",
         ])
-        .check_output()?;
+        .output_checked_utf8()?;
 
     debug!("Checking for gnome extensions: {}", output);
-    if !output.contains("org.gnome.Shell.Extensions") {
+    if !output.stdout.contains("org.gnome.Shell.Extensions") {
         return Err(SkipStep(String::from("Gnome shell extensions are unregistered in DBus")).into());
     }
 
@@ -213,9 +262,10 @@ pub fn upgrade_gnome_extensions(ctx: &ExecutionContext) -> Result<()> {
             "--method",
             "org.gnome.Shell.Extensions.CheckForUpdates",
         ])
-        .check_run()
+        .status_checked()
 }
 
+#[cfg(any(target_os = "linux", target_os = "macos"))]
 pub fn run_brew_formula(ctx: &ExecutionContext, variant: BrewVariant) -> Result<()> {
     #[allow(unused_variables)]
     let binary_name = require(variant.binary_name())?;
@@ -230,18 +280,18 @@ pub fn run_brew_formula(ctx: &ExecutionContext, variant: BrewVariant) -> Result<
     print_separator(variant.step_title());
     let run_type = ctx.run_type();
 
-    variant.execute(run_type).arg("update").check_run()?;
+    variant.execute(run_type).arg("update").status_checked()?;
     variant
         .execute(run_type)
         .args(["upgrade", "--ignore-pinned", "--formula"])
-        .check_run()?;
+        .status_checked()?;
 
     if ctx.config().cleanup() {
-        variant.execute(run_type).arg("cleanup").check_run()?;
+        variant.execute(run_type).arg("cleanup").status_checked()?;
     }
 
     if ctx.config().brew_autoremove() {
-        variant.execute(run_type).arg("autoremove").check_run()?;
+        variant.execute(run_type).arg("autoremove").status_checked()?;
     }
 
     Ok(())
@@ -259,8 +309,8 @@ pub fn run_brew_cask(ctx: &ExecutionContext, variant: BrewVariant) -> Result<()>
     let cask_upgrade_exists = variant
         .execute(RunType::Wet)
         .args(["--repository", "buo/cask-upgrade"])
-        .check_output()
-        .map(|p| Path::new(p.trim()).exists())?;
+        .output_checked_utf8()
+        .map(|p| Path::new(p.stdout.trim()).exists())?;
 
     let mut brew_args = vec![];
 
@@ -276,10 +326,10 @@ pub fn run_brew_cask(ctx: &ExecutionContext, variant: BrewVariant) -> Result<()>
         }
     }
 
-    variant.execute(run_type).args(&brew_args).check_run()?;
+    variant.execute(run_type).args(&brew_args).status_checked()?;
 
     if ctx.config().cleanup() {
-        variant.execute(run_type).arg("cleanup").check_run()?;
+        variant.execute(run_type).arg("cleanup").status_checked()?;
     }
 
     Ok(())
@@ -290,7 +340,7 @@ pub fn run_guix(ctx: &ExecutionContext) -> Result<()> {
 
     let run_type = ctx.run_type();
 
-    let output = Command::new(&guix).arg("pull").check_output();
+    let output = Command::new(&guix).arg("pull").output_checked_utf8();
     debug!("guix pull output: {:?}", output);
     let should_upgrade = output.is_ok();
     debug!("Can Upgrade Guix: {:?}", should_upgrade);
@@ -298,7 +348,7 @@ pub fn run_guix(ctx: &ExecutionContext) -> Result<()> {
     print_separator("Guix");
 
     if should_upgrade {
-        return run_type.execute(&guix).args(["package", "-u"]).check_run();
+        return run_type.execute(&guix).args(["package", "-u"]).status_checked();
     }
     Err(SkipStep(String::from("Guix Pull Failed, Skipping")).into())
 }
@@ -307,6 +357,7 @@ pub fn run_nix(ctx: &ExecutionContext) -> Result<()> {
     let nix = require("nix")?;
     let nix_channel = require("nix-channel")?;
     let nix_env = require("nix-env")?;
+    // TODO: Is None possible here?
     let profile_path = match home::home_dir() {
         Some(home) => Path::new(&home).join(".nix-profile"),
         None => Path::new("/nix/var/nix/profiles/per-user/default").into(),
@@ -314,27 +365,26 @@ pub fn run_nix(ctx: &ExecutionContext) -> Result<()> {
     debug!("nix profile: {:?}", profile_path);
     let manifest_json_path = profile_path.join("manifest.json");
 
-    let output = Command::new(&nix_env).args(["--query", "nix"]).check_output();
-    debug!("nix-env output: {:?}", output);
-    let should_self_upgrade = output.is_ok();
+    // Should we attempt to upgrade Nix with `nix upgrade-nix`?
+    #[allow(unused_mut)]
+    let mut should_self_upgrade = cfg!(target_os = "macos");
+
+    #[cfg(target_os = "linux")]
+    {
+        // We can't use `nix upgrade-nix` on NixOS.
+        if let Ok(Distribution::NixOS) = Distribution::detect() {
+            should_self_upgrade = false;
+        }
+    }
 
     print_separator("Nix");
 
     let multi_user = fs::metadata(&nix)?.uid() == 0;
     debug!("Multi user nix: {}", multi_user);
 
-    #[cfg(target_os = "linux")]
-    {
-        use super::linux::Distribution;
-
-        if let Ok(Distribution::NixOS) = Distribution::detect() {
-            return Err(SkipStep(String::from("Nix on NixOS must be upgraded via nixos-rebuild switch")).into());
-        }
-    }
-
     #[cfg(target_os = "macos")]
     {
-        if let Ok(..) = require("darwin-rebuild") {
+        if require("darwin-rebuild").is_ok() {
             return Err(SkipStep(String::from(
                 "Nix-darwin on macOS must be upgraded via darwin-rebuild switch",
             ))
@@ -344,25 +394,41 @@ pub fn run_nix(ctx: &ExecutionContext) -> Result<()> {
 
     let run_type = ctx.run_type();
 
+    let nix_args = ["--extra-experimental-features", "nix-command"];
+
     if should_self_upgrade {
         if multi_user {
-            ctx.execute_elevated(&nix, true)?.arg("upgrade-nix").check_run()?;
+            ctx.execute_elevated(&nix, true)?
+                .args(nix_args)
+                .arg("upgrade-nix")
+                .status_checked()?;
         } else {
-            run_type.execute(&nix).arg("upgrade-nix").check_run()?;
-        }
-    }
-
-    run_type.execute(nix_channel).arg("--update").check_run()?;
-
-    if std::path::Path::new(&manifest_json_path).exists() {
             run_type
                 .execute(&nix)
+                .args(nix_args)
+                .arg("upgrade-nix")
+                .status_checked()?;
+        }
+    }
+
+    run_type.execute(nix_channel).arg("--update").status_checked()?;
+
+    if Path::new(&manifest_json_path).exists() {
+        run_type
+            .execute(&nix)
+            .args(nix_args)
             .arg("profile")
             .arg("upgrade")
             .arg(".*")
-            .check_run()
+            .arg("--verbose")
+            .status_checked()
     } else {
-        run_type.execute(&nix_env).arg("--upgrade").check_run()
+        let mut command = run_type.execute(nix_env);
+        command.arg("--upgrade");
+        if let Some(args) = ctx.config().nix_env_arguments() {
+            command.args(args.split_whitespace());
+        };
+        command.status_checked()
     }
 }
 
@@ -371,50 +437,59 @@ pub fn run_yadm(ctx: &ExecutionContext) -> Result<()> {
 
     print_separator("yadm");
 
-    ctx.run_type().execute(yadm).arg("pull").check_run()
+    ctx.run_type().execute(yadm).arg("pull").status_checked()
 }
 
-pub fn run_asdf(run_type: RunType) -> Result<()> {
+pub fn run_asdf(ctx: &ExecutionContext) -> Result<()> {
     let asdf = require("asdf")?;
 
     print_separator("asdf");
-    let exit_status = run_type.execute(&asdf).arg("update").spawn()?.wait()?;
+    ctx.run_type()
+        .execute(&asdf)
+        .arg("update")
+        .status_checked_with_codes(&[42])?;
 
-    if let ExecutorExitStatus::Wet(e) = exit_status {
-        if !(e.success() || e.code().map(|c| c == 42).unwrap_or(false)) {
-            return Err(TopgradeError::ProcessFailed(e).into());
-        }
-    }
-    run_type.execute(&asdf).args(["plugin", "update", "--all"]).check_run()
+    ctx.run_type()
+        .execute(&asdf)
+        .args(["plugin", "update", "--all"])
+        .status_checked()
 }
 
-pub fn run_home_manager(run_type: RunType) -> Result<()> {
+pub fn run_home_manager(ctx: &ExecutionContext) -> Result<()> {
     let home_manager = require("home-manager")?;
 
     print_separator("home-manager");
-    run_type.execute(home_manager).arg("switch").check_run()
+
+    let mut cmd = ctx.run_type().execute(home_manager);
+    cmd.arg("switch");
+
+    if let Some(extra_args) = ctx.config().home_manager() {
+        cmd.args(extra_args);
+    }
+
+    cmd.status_checked()
 }
 
-pub fn run_tldr(run_type: RunType) -> Result<()> {
+pub fn run_tldr(ctx: &ExecutionContext) -> Result<()> {
     let tldr = require("tldr")?;
 
     print_separator("TLDR");
-    run_type.execute(tldr).arg("--update").check_run()
+    ctx.run_type().execute(tldr).arg("--update").status_checked()
 }
 
-pub fn run_pearl(run_type: RunType) -> Result<()> {
+pub fn run_pearl(ctx: &ExecutionContext) -> Result<()> {
     let pearl = require("pearl")?;
     print_separator("pearl");
 
-    run_type.execute(pearl).arg("update").check_run()
+    ctx.run_type().execute(pearl).arg("update").status_checked()
 }
 
-pub fn run_sdkman(base_dirs: &BaseDirs, cleanup: bool, run_type: RunType) -> Result<()> {
+pub fn run_sdkman(ctx: &ExecutionContext) -> Result<()> {
     let bash = require("bash")?;
 
-    let sdkman_init_path = env::var("SDKMAN_DIR")
+    let sdkman_init_path = var("SDKMAN_DIR")
         .map(PathBuf::from)
-        .unwrap_or_else(|_| base_dirs.home_dir().join(".sdkman"))
+        .unwrap_or_else(|_| HOME_DIR.join(".sdkman"))
         .join("bin")
         .join("sdkman-init.sh")
         .require()
@@ -422,9 +497,9 @@ pub fn run_sdkman(base_dirs: &BaseDirs, cleanup: bool, run_type: RunType) -> Res
 
     print_separator("SDKMAN!");
 
-    let sdkman_config_path = env::var("SDKMAN_DIR")
+    let sdkman_config_path = var("SDKMAN_DIR")
         .map(PathBuf::from)
-        .unwrap_or_else(|_| base_dirs.home_dir().join(".sdkman"))
+        .unwrap_or_else(|_| HOME_DIR.join(".sdkman"))
         .join("etc")
         .join("config")
         .require()?;
@@ -437,30 +512,36 @@ pub fn run_sdkman(base_dirs: &BaseDirs, cleanup: bool, run_type: RunType) -> Res
 
     if selfupdate_enabled == "true" {
         let cmd_selfupdate = format!("source {} && sdk selfupdate", &sdkman_init_path);
-        run_type
+        ctx.run_type()
             .execute(&bash)
             .args(["-c", cmd_selfupdate.as_str()])
-            .check_run()?;
+            .status_checked()?;
     }
 
     let cmd_update = format!("source {} && sdk update", &sdkman_init_path);
-    run_type.execute(&bash).args(["-c", cmd_update.as_str()]).check_run()?;
+    ctx.run_type()
+        .execute(&bash)
+        .args(["-c", cmd_update.as_str()])
+        .status_checked()?;
 
     let cmd_upgrade = format!("source {} && sdk upgrade", &sdkman_init_path);
-    run_type.execute(&bash).args(["-c", cmd_upgrade.as_str()]).check_run()?;
+    ctx.run_type()
+        .execute(&bash)
+        .args(["-c", cmd_upgrade.as_str()])
+        .status_checked()?;
 
-    if cleanup {
+    if ctx.config().cleanup() {
         let cmd_flush_archives = format!("source {} && sdk flush archives", &sdkman_init_path);
-        run_type
+        ctx.run_type()
             .execute(&bash)
             .args(["-c", cmd_flush_archives.as_str()])
-            .check_run()?;
+            .status_checked()?;
 
         let cmd_flush_temp = format!("source {} && sdk flush temp", &sdkman_init_path);
-        run_type
+        ctx.run_type()
             .execute(&bash)
             .args(["-c", cmd_flush_temp.as_str()])
-            .check_run()?;
+            .status_checked()?;
     }
 
     Ok(())
@@ -471,7 +552,7 @@ pub fn run_bun(ctx: &ExecutionContext) -> Result<()> {
 
     print_separator("Bun");
 
-    ctx.run_type().execute(bun).arg("upgrade").check_run()
+    ctx.run_type().execute(bun).arg("upgrade").status_checked()
 }
 
 /// Update dotfiles with `rcm(7)`.
@@ -481,10 +562,17 @@ pub fn run_rcm(ctx: &ExecutionContext) -> Result<()> {
     let rcup = require("rcup")?;
 
     print_separator("rcm");
-    ctx.run_type().execute(rcup).arg("-v").check_run()
+    ctx.run_type().execute(rcup).arg("-v").status_checked()
 }
 
-pub fn reboot() {
-    print!("Rebooting...");
-    Command::new("sudo").arg("reboot").spawn().unwrap().wait().unwrap();
+pub fn run_maza(ctx: &ExecutionContext) -> Result<()> {
+    let maza = require("maza")?;
+
+    print_separator("maza");
+    ctx.run_type().execute(maza).arg("update").status_checked()
+}
+
+pub fn reboot() -> Result<()> {
+    print!("Rebooting...");
+    Command::new("sudo").arg("reboot").status_checked()
 }

src/steps/os/windows.rs

@@ -2,13 +2,15 @@ use std::convert::TryFrom;
 use std::path::Path;
 use std::{ffi::OsStr, process::Command};
 
-use anyhow::Result;
-use log::debug;
+use color_eyre::eyre::Result;
+use etcetera::base_strategy::BaseStrategy;
+use tracing::debug;
 
+use crate::command::CommandExt;
 use crate::execution_context::ExecutionContext;
-use crate::executor::{CommandExt, RunType};
+use crate::steps::git::GitAction;
 use crate::terminal::{print_separator, print_warning};
-use crate::utils::require;
+use crate::utils::{require, which};
 use crate::{error::SkipStep, steps::git::Repositories};
 use crate::{powershell, Step};
 
@@ -18,23 +20,22 @@ pub fn run_chocolatey(ctx: &ExecutionContext) -> Result<()> {
 
     print_separator("Chocolatey");
 
-    let mut cmd = &choco;
-    let mut args = vec!["upgrade", "all"];
-
-    if let Some(sudo) = ctx.sudo() {
-        cmd = sudo;
-        args.insert(0, "choco");
+    let mut command = match ctx.sudo() {
+        Some(sudo) => {
+            let mut command = ctx.run_type().execute(sudo);
+            command.arg(choco);
+            command
         }
+        None => ctx.run_type().execute(choco),
+    };
 
-    let mut command = ctx.run_type().execute(cmd);
-
-    command.args(&args);
+    command.args(["upgrade", "all"]);
 
     if yes {
         command.arg("--yes");
     }
 
-    command.check_run()
+    command.status_checked()
 }
 
 pub fn run_winget(ctx: &ExecutionContext) -> Result<()> {
@@ -47,26 +48,76 @@ pub fn run_winget(ctx: &ExecutionContext) -> Result<()> {
         return Err(SkipStep(String::from("Winget is disabled by default")).into());
     }
 
-    ctx.run_type().execute(&winget).args(["upgrade", "--all"]).check_run()
+    ctx.run_type()
+        .execute(winget)
+        .args(["upgrade", "--all"])
+        .status_checked()
 }
 
-pub fn run_scoop(cleanup: bool, run_type: RunType) -> Result<()> {
+pub fn run_scoop(ctx: &ExecutionContext) -> Result<()> {
     let scoop = require("scoop")?;
 
     print_separator("Scoop");
 
-    run_type.execute(&scoop).args(["update"]).check_run()?;
-    run_type.execute(&scoop).args(["update", "*"]).check_run()?;
+    ctx.run_type().execute(&scoop).args(["update"]).status_checked()?;
+    ctx.run_type().execute(&scoop).args(["update", "*"]).status_checked()?;
 
-    if cleanup {
-        run_type.execute(&scoop).args(["cleanup", "*"]).check_run()?;
+    if ctx.config().cleanup() {
+        ctx.run_type().execute(&scoop).args(["cleanup", "*"]).status_checked()?;
     }
 
     Ok(())
 }
 
+pub fn update_wsl(ctx: &ExecutionContext) -> Result<()> {
+    if !is_wsl_installed()? {
+        return Err(SkipStep("WSL not installed".to_string()).into());
+    }
+
+    let wsl = require("wsl")?;
+
+    print_separator("Update WSL");
+
+    let mut wsl_command = ctx.run_type().execute(wsl);
+    wsl_command.args(["--update"]);
+
+    if ctx.config().wsl_update_pre_release() {
+        wsl_command.args(["--pre-release"]);
+    }
+
+    if ctx.config().wsl_update_use_web_download() {
+        wsl_command.args(["--web-download"]);
+    }
+    wsl_command.status_checked()?;
+    Ok(())
+}
+
+/// Detect if WSL is installed or not.
+///
+/// For WSL, we cannot simply check if command `wsl` is installed as on newer
+/// versions of Windows (since windows 10 version 2004), this commmand is
+/// installed by default.
+///
+/// If the command is installed and the user hasn't installed any Linux distros
+/// on it, command `wsl -l` would print a help message and exit with failure, we
+/// use this to check whether WSL is install or not.
+fn is_wsl_installed() -> Result<bool> {
+    if let Some(wsl) = which("wsl") {
+        // Don't use `output_checked` as an execution failure log is not wanted
+        #[allow(clippy::disallowed_methods)]
+        let output = Command::new(wsl).arg("-l").output()?;
+        let status = output.status;
+
+        if status.success() {
+            return Ok(true);
+        }
+    }
+
+    Ok(false)
+}
+
 fn get_wsl_distributions(wsl: &Path) -> Result<Vec<String>> {
-    let output = Command::new(&wsl).args(["--list", "-q"]).check_output()?;
+    let output = Command::new(wsl).args(["--list", "-q"]).output_checked_utf8()?.stdout;
     Ok(output
         .lines()
         .filter(|s| !s.is_empty())
@@ -77,22 +128,59 @@ fn get_wsl_distributions(wsl: &Path) -> Result<Vec<String>> {
 fn upgrade_wsl_distribution(wsl: &Path, dist: &str, ctx: &ExecutionContext) -> Result<()> {
     let topgrade = Command::new(wsl)
         .args(["-d", dist, "bash", "-lc", "which topgrade"])
-        .check_output()
-        .map_err(|_| SkipStep(String::from("Could not find Topgrade installed in WSL")))?;
+        .output_checked_utf8()
+        .map_err(|_| SkipStep(String::from("Could not find Topgrade installed in WSL")))?
+        .stdout // The normal output from `which topgrade` appends a newline, so we trim it here.
+        .trim_end()
+        .to_owned();
+
+    let mut command = ctx.run_type().execute(wsl);
+
+    // The `arg` method automatically quotes its arguments.
+    // This means we can't append additional arguments to `topgrade` in WSL
+    // by calling `arg` successively.
+    //
+    // For example:
+    //
+    // ```rust
+    // command
+    //  .args(["-d", dist, "bash", "-c"])
+    //  .arg(format!("TOPGRADE_PREFIX={dist} exec {topgrade}"));
+    // ```
+    //
+    // creates a command string like:
+    // > `C:\WINDOWS\system32\wsl.EXE -d Ubuntu bash -c 'TOPGRADE_PREFIX=Ubuntu exec /bin/topgrade'`
+    //
+    // Adding the following:
+    //
+    // ```rust
+    // command.arg("-v");
+    // ```
+    //
+    // appends the next argument like so:
+    // > `C:\WINDOWS\system32\wsl.EXE -d Ubuntu bash -c 'TOPGRADE_PREFIX=Ubuntu exec /bin/topgrade' -v`
+    // which means `-v` isn't passed to `topgrade`.
+    let mut args = String::new();
+    if ctx.config().verbose() {
+        args.push_str("-v");
+    }
 
-    let mut command = ctx.run_type().execute(&wsl);
     command
         .args(["-d", dist, "bash", "-c"])
-        .arg(format!("TOPGRADE_PREFIX={} exec {}", dist, topgrade));
+        .arg(format!("TOPGRADE_PREFIX={dist} exec {topgrade} {args}"));
 
     if ctx.config().yes(Step::Wsl) {
         command.arg("-y");
     }
 
-    command.check_run()
+    command.status_checked()
 }
 
 pub fn run_wsl_topgrade(ctx: &ExecutionContext) -> Result<()> {
+    if !is_wsl_installed()? {
+        return Err(SkipStep("WSL not installed".to_string()).into());
+    }
+
     let wsl = require("wsl")?;
     let wsl_distributions = get_wsl_distributions(&wsl)?;
     let mut ran = false;
@@ -129,17 +217,21 @@ pub fn windows_update(ctx: &ExecutionContext) -> Result<()> {
 
     print_separator("Windows Update");
     println!("Running Windows Update. Check the control panel for progress.");
-    ctx.run_type().execute(&usoclient).arg("ScanInstallWait").check_run()?;
-    ctx.run_type().execute(&usoclient).arg("StartInstall").check_run()
+    ctx.run_type()
+        .execute(&usoclient)
+        .arg("ScanInstallWait")
+        .status_checked()?;
+    ctx.run_type().execute(&usoclient).arg("StartInstall").status_checked()
 }
 
-pub fn reboot() {
-    Command::new("shutdown").args(["/R", "/T", "0"]).spawn().ok();
+pub fn reboot() -> Result<()> {
+    // If this works, it won't return, but if it doesn't work, it may return a useful error
+    // message.
+    Command::new("shutdown").args(["/R", "/T", "0"]).status_checked()
 }
 
-pub fn insert_startup_scripts(ctx: &ExecutionContext, git_repos: &mut Repositories) -> Result<()> {
-    let startup_dir = ctx
-        .base_dirs()
+pub fn insert_startup_scripts(git_repos: &mut Repositories) -> Result<()> {
+    let startup_dir = crate::WINDOWS_DIRS
         .data_dir()
         .join("Microsoft\\Windows\\Start Menu\\Programs\\Startup");
     for entry in std::fs::read_dir(&startup_dir)?.flatten() {
@@ -148,7 +240,7 @@ pub fn insert_startup_scripts(ctx: &ExecutionContext, git_repos: &mut Repositori
             if let Ok(lnk) = parselnk::Lnk::try_from(Path::new(&path)) {
                 debug!("Startup link: {:?}", lnk);
                 if let Some(path) = lnk.relative_path() {
-                    git_repos.insert_if_repo(&startup_dir.join(path));
+                    git_repos.insert_if_repo(&startup_dir.join(path), GitAction::Pull);
                 }
             }
         }

src/steps/powershell.rs

@@ -3,10 +3,10 @@ use std::path::Path;
 use std::path::PathBuf;
 use std::process::Command;
 
-use anyhow::Result;
+use color_eyre::eyre::Result;
 
+use crate::command::CommandExt;
 use crate::execution_context::ExecutionContext;
-use crate::executor::CommandExt;
 use crate::terminal::{is_dumb, print_separator};
 use crate::utils::{require_option, which, PathExt};
 use crate::Step;
@@ -27,8 +27,8 @@ impl Powershell {
         let profile = path.as_ref().and_then(|path| {
             Command::new(path)
                 .args(["-NoProfile", "-Command", "Split-Path $profile"])
-                .check_output()
-                .map(|output| PathBuf::from(output.trim()))
+                .output_checked_utf8()
+                .map(|output| PathBuf::from(output.stdout.trim()))
                 .and_then(|p| p.require())
                 .ok()
         });
@@ -50,10 +50,10 @@ impl Powershell {
             .args([
                 "-NoProfile",
                 "-Command",
-                &format!("Get-Module -ListAvailable {}", command),
+                &format!("Get-Module -ListAvailable {command}"),
             ])
-            .check_output()
-            .map(|result| !result.is_empty())
+            .output_checked_utf8()
+            .map(|result| !result.stdout.is_empty())
             .unwrap_or(false)
     }
 
@@ -81,7 +81,7 @@ impl Powershell {
             .execute(powershell)
             // This probably doesn't need `shell_words::join`.
             .args(["-NoProfile", "-Command", &cmd.join(" ")])
-            .check_run()
+            .status_checked()
     }
 
     #[cfg(windows)]
@@ -119,6 +119,6 @@ impl Powershell {
                     }
                 ),
             ])
-            .check_run()
+            .status_checked()
     }
 }

src/steps/remote/ssh.rs

@@ -1,6 +1,8 @@
-use anyhow::Result;
+use color_eyre::eyre::Result;
 
-use crate::{error::SkipStep, execution_context::ExecutionContext, terminal::print_separator, utils};
+use crate::{
+    command::CommandExt, error::SkipStep, execution_context::ExecutionContext, terminal::print_separator, utils,
+};
 
 fn prepare_async_ssh_command(args: &mut Vec<&str>) {
     args.insert(0, "ssh");
@@ -17,14 +19,14 @@ pub fn ssh_step(ctx: &ExecutionContext, hostname: &str) -> Result<()> {
         args.extend(ssh_arguments.split_whitespace());
     }
 
-    let env = format!("TOPGRADE_PREFIX={}", hostname);
+    let env = format!("TOPGRADE_PREFIX={hostname}");
     args.extend(["env", &env, "$SHELL", "-lc", topgrade]);
 
     if ctx.config().run_in_tmux() && !ctx.run_type().dry() {
         #[cfg(unix)]
         {
             prepare_async_ssh_command(&mut args);
-            crate::tmux::run_command(ctx, &shell_words::join(args))?;
+            crate::tmux::run_command(ctx, hostname, &shell_words::join(args))?;
             Err(SkipStep(String::from("Remote Topgrade launched in Tmux")).into())
         }
 
@@ -41,12 +43,12 @@ pub fn ssh_step(ctx: &ExecutionContext, hostname: &str) -> Result<()> {
             args.extend(ssh_arguments.split_whitespace());
         }
 
-        let env = format!("TOPGRADE_PREFIX={}", hostname);
+        let env = format!("TOPGRADE_PREFIX={hostname}");
         args.extend(["env", &env, "$SHELL", "-lc", topgrade]);
 
-        print_separator(format!("Remote ({})", hostname));
-        println!("Connecting to {}...", hostname);
+        print_separator(format!("Remote ({hostname})"));
+        println!("Connecting to {hostname}...");
 
-        ctx.run_type().execute(ssh).args(&args).check_run()
+        ctx.run_type().execute(ssh).args(&args).status_checked()
     }
 }

src/steps/remote/vagrant.rs

@@ -2,13 +2,13 @@ use std::path::{Path, PathBuf};
 use std::process::Command;
 use std::{fmt::Display, rc::Rc, str::FromStr};
 
-use anyhow::Result;
-use log::{debug, error};
+use color_eyre::eyre::Result;
 use regex::Regex;
 use strum::EnumString;
+use tracing::{debug, error};
 
+use crate::command::CommandExt;
 use crate::execution_context::ExecutionContext;
-use crate::executor::CommandExt;
 use crate::terminal::print_separator;
 use crate::{error::SkipStep, utils, Step};
 
@@ -61,10 +61,11 @@ impl Vagrant {
         let output = Command::new(&self.path)
             .arg("status")
             .current_dir(directory)
-            .check_output()?;
+            .output_checked_utf8()?;
         debug!("Vagrant output in {}: {}", directory, output);
 
         let boxes = output
+            .stdout
             .split('\n')
             .skip(2)
             .take_while(|line| !(line.is_empty() || line.starts_with('\r')))
@@ -115,7 +116,7 @@ impl<'a> TemporaryPowerOn<'a> {
             .execute(vagrant)
             .args([subcommand, &vagrant_box.name])
             .current_dir(vagrant_box.path.clone())
-            .check_run()?;
+            .status_checked()?;
         Ok(TemporaryPowerOn {
             vagrant,
             vagrant_box,
@@ -142,7 +143,7 @@ impl<'a> Drop for TemporaryPowerOn<'a> {
             .execute(self.vagrant)
             .args([subcommand, &self.vagrant_box.name])
             .current_dir(self.vagrant_box.path.clone())
-            .check_run()
+            .status_checked()
             .ok();
     }
 }
@@ -182,7 +183,7 @@ pub fn topgrade_vagrant_box(ctx: &ExecutionContext, vagrant_box: &VagrantBox) ->
     let mut _poweron = None;
     if !vagrant_box.initial_status.powered_on() {
         if !(ctx.config().vagrant_power_on().unwrap_or(true)) {
-            return Err(SkipStep(format!("Skipping powered off box {}", vagrant_box)).into());
+            return Err(SkipStep(format!("Skipping powered off box {vagrant_box}")).into());
         } else {
             print_separator(seperator);
             _poweron = Some(vagrant.temporary_power_on(vagrant_box, ctx)?);
@@ -199,7 +200,7 @@ pub fn topgrade_vagrant_box(ctx: &ExecutionContext, vagrant_box: &VagrantBox) ->
         .execute(&vagrant.path)
         .current_dir(&vagrant_box.path)
         .args(["ssh", "-c", &command])
-        .check_run()
+        .status_checked()
 }
 
 pub fn upgrade_vagrant_boxes(ctx: &ExecutionContext) -> Result<()> {
@@ -208,12 +209,12 @@ pub fn upgrade_vagrant_boxes(ctx: &ExecutionContext) -> Result<()> {
 
     let outdated = Command::new(&vagrant)
         .args(["box", "outdated", "--global"])
-        .check_output()?;
+        .output_checked_utf8()?;
 
     let re = Regex::new(r"\* '(.*?)' for '(.*?)' is outdated").unwrap();
 
     let mut found = false;
-    for ele in re.captures_iter(&outdated) {
+    for ele in re.captures_iter(&outdated.stdout) {
         found = true;
         let _ = ctx
             .run_type()
@@ -222,13 +223,16 @@ pub fn upgrade_vagrant_boxes(ctx: &ExecutionContext) -> Result<()> {
             .arg(ele.get(1).unwrap().as_str())
             .arg("--provider")
             .arg(ele.get(2).unwrap().as_str())
-            .check_run();
+            .status_checked();
     }
 
     if !found {
         println!("No outdated boxes")
     } else {
-        ctx.run_type().execute(&vagrant).args(["box", "prune"]).check_run()?;
+        ctx.run_type()
+            .execute(&vagrant)
+            .args(["box", "prune"])
+            .status_checked()?;
     }
 
     Ok(())

src/steps/tmux.rs

@@ -1,26 +1,28 @@
-use crate::executor::RunType;
+use std::env;
+use std::path::PathBuf;
+use std::process::Command;
+
+use color_eyre::eyre::eyre;
+use color_eyre::eyre::Context;
+use color_eyre::eyre::Result;
+
+use crate::command::CommandExt;
 use crate::terminal::print_separator;
+use crate::HOME_DIR;
 use crate::{
     execution_context::ExecutionContext,
-    utils::{which, Check, PathExt},
+    utils::{which, PathExt},
 };
-use anyhow::Result;
-use directories::BaseDirs;
-use std::env;
-use std::io;
-use std::os::unix::process::CommandExt;
-use std::path::PathBuf;
-use std::process::{exit, Command};
 
-pub fn run_tpm(base_dirs: &BaseDirs, run_type: RunType) -> Result<()> {
-    let tpm = base_dirs
-        .home_dir()
-        .join(".tmux/plugins/tpm/bin/update_plugins")
-        .require()?;
+#[cfg(unix)]
+use std::os::unix::process::CommandExt as _;
+
+pub fn run_tpm(ctx: &ExecutionContext) -> Result<()> {
+    let tpm = HOME_DIR.join(".tmux/plugins/tpm/bin/update_plugins").require()?;
 
     print_separator("tmux plugins");
 
-    run_type.execute(tpm).arg("all").check_run()
+    ctx.run_type().execute(tpm).arg("all").status_checked()
 }
 
 struct Tmux {
@@ -44,73 +46,130 @@ impl Tmux {
         command
     }
 
-    fn has_session(&self, session_name: &str) -> Result<bool, io::Error> {
+    fn has_session(&self, session_name: &str) -> Result<bool> {
         Ok(self
             .build()
             .args(["has-session", "-t", session_name])
-            .output()?
+            .output_checked_with(|_| Ok(()))?
             .status
             .success())
     }
 
-    fn new_session(&self, session_name: &str) -> Result<bool, io::Error> {
-        Ok(self
+    /// Create a new tmux session with the given name, running the given command.
+    /// The command is passed to `sh` (see "shell-command arguments are sh(1) commands" in the
+    /// `tmux(1)` man page).
+    fn new_session(&self, session_name: &str, window_name: &str, command: &str) -> Result<()> {
+        let _ = self
             .build()
-            .args(["new-session", "-d", "-s", session_name, "-n", "dummy"])
-            .spawn()?
-            .wait()?
-            .success())
+            // `-d`: initial size comes from the global `default-size` option (instead
+            //       of passing `-x` and `-y` arguments.
+            //       (What do those even do?)
+            // `-s`: session name
+            // `-n`: window name (always `topgrade`)
+            .args(["new-session", "-d", "-s", session_name, "-n", window_name, command])
+            .output_checked()?;
+        Ok(())
     }
 
-    fn run_in_session(&self, command: &str) -> Result<()> {
-        self.build()
-            .args(["new-window", "-t", "topgrade", command])
-            .spawn()?
-            .wait()?
-            .check()?;
+    /// Like [`new_session`] but it appends a digit to the session name (if necessary) to
+    /// avoid duplicate session names.
+    ///
+    /// The session name is returned.
+    fn new_unique_session(&self, session_name: &str, window_name: &str, command: &str) -> Result<String> {
+        let mut session = session_name.to_owned();
+        for i in 1.. {
+            if !self
+                .has_session(&session)
+                .context("Error determining if a tmux session exists")?
+            {
+                self.new_session(&session, window_name, command)
+                    .context("Error running Topgrade in tmux")?;
+                return Ok(session);
+            }
+            session = format!("{session_name}-{i}");
+        }
+        unreachable!()
+    }
 
-        Ok(())
+    /// Create a new window in the given tmux session, running the given command.
+    fn new_window(&self, session_name: &str, window_name: &str, command: &str) -> Result<()> {
+        self.build()
+            // `-d`: initial size comes from the global `default-size` option (instead
+            //       of passing `-x` and `-y` arguments.
+            //       (What do those even do?)
+            // `-s`: session name
+            // `-n`: window name
+            .args([
+                "new-window",
+                "-a",
+                "-t",
+                &format!("{session_name}:{window_name}"),
+                "-n",
+                window_name,
+                command,
+            ])
+            .env_remove("TMUX")
+            .status_checked()
+    }
+
+    fn window_indices(&self, session_name: &str) -> Result<Vec<usize>> {
+        self.build()
+            .args(["list-windows", "-F", "#{window_index}", "-t", session_name])
+            .output_checked_utf8()?
+            .stdout
+            .lines()
+            .map(|l| l.parse())
+            .collect::<Result<Vec<usize>, _>>()
+            .context("Failed to compute tmux windows")
     }
 }
 
-pub fn run_in_tmux(args: Vec<String>) -> ! {
+pub fn run_in_tmux(args: Vec<String>) -> Result<()> {
     let command = {
         let mut command = vec![
             String::from("env"),
             String::from("TOPGRADE_KEEP_END=1"),
             String::from("TOPGRADE_INSIDE_TMUX=1"),
         ];
+        // TODO: Should we use `topgrade` instead of the first argument here, which may be
+        // a local path?
         command.extend(env::args());
         shell_words::join(command)
     };
 
     let tmux = Tmux::new(args);
 
-    if !tmux.has_session("topgrade").expect("Error detecting a tmux session") {
-        tmux.new_session("topgrade").expect("Error creating a tmux session");
-    }
-
-    tmux.run_in_session(&command).expect("Error running Topgrade in tmux");
-    tmux.build()
-        .args(["kill-window", "-t", "topgrade:dummy"])
-        .output()
-        .expect("Error killing the dummy tmux window");
+    // Find an unused session and run `topgrade` in it with the current command's arguments.
+    let session_name = "topgrade";
+    let window_name = "topgrade";
+    let session = tmux.new_unique_session(session_name, window_name, &command)?;
 
+    // Only attach to the newly-created session if we're not currently in a tmux session.
     if env::var("TMUX").is_err() {
-        let err = tmux.build().args(["attach", "-t", "topgrade"]).exec();
-        panic!("{:?}", err);
+        let err = tmux.build().args(["attach-session", "-t", &session]).exec();
+        Err(eyre!("{err}")).context("Failed to `execvp(3)` tmux")
     } else {
         println!("Topgrade launched in a new tmux session");
-        exit(0);
+        Ok(())
     }
 }
 
-pub fn run_command(ctx: &ExecutionContext, command: &str) -> Result<()> {
-    Tmux::new(ctx.config().tmux_arguments()?)
-        .build()
-        .args(["new-window", "-a", "-t", "topgrade:1", command])
-        .env_remove("TMUX")
-        .spawn()?
-        .wait()?
-        .check()
+pub fn run_command(ctx: &ExecutionContext, window_name: &str, command: &str) -> Result<()> {
+    let tmux = Tmux::new(ctx.config().tmux_arguments()?);
+
+    match ctx.get_tmux_session() {
+        Some(session_name) => {
+            let indices = tmux.window_indices(&session_name)?;
+            let last_window = indices
+                .iter()
+                .last()
+                .ok_or_else(|| eyre!("tmux session {session_name} has no windows"))?;
+            tmux.new_window(&session_name, &format!("{last_window}"), command)?;
+        }
+        None => {
+            let name = tmux.new_unique_session("topgrade", window_name, command)?;
+            ctx.set_tmux_session(name);
+        }
+    }
+    Ok(())
 }

src/steps/toolbx.rs

@@ -1,17 +1,20 @@
-use anyhow::Result;
+use color_eyre::eyre::Result;
 
+use crate::command::CommandExt;
 use crate::config::Step;
 use crate::terminal::print_separator;
 use crate::{execution_context::ExecutionContext, utils::require};
-use log::debug;
 use std::path::Path;
 use std::{path::PathBuf, process::Command};
+use tracing::debug;
 
 fn list_toolboxes(toolbx: &Path) -> Result<Vec<String>> {
-    let output = Command::new(toolbx).args(["list", "--containers"]).output()?;
-    let output_str = String::from_utf8(output.stdout)?;
+    let output = Command::new(toolbx)
+        .args(["list", "--containers"])
+        .output_checked_utf8()?;
 
-    let proc: Vec<String> = output_str
+    let proc: Vec<String> = output
+        .stdout
         .lines()
         // Skip the first line since that contains only status information
         .skip(1)
@@ -39,7 +42,7 @@ pub fn run_toolbx(ctx: &ExecutionContext) -> Result<()> {
     let topgrade_path = topgrade_path.to_str().unwrap();
 
     for tb in toolboxes.iter() {
-        let topgrade_prefix = format!("TOPGRADE_PREFIX='Toolbx {}'", tb);
+        let topgrade_prefix = format!("TOPGRADE_PREFIX='Toolbx {tb}'");
         let mut args = vec![
             "run",
             "-c",
@@ -49,12 +52,14 @@ pub fn run_toolbx(ctx: &ExecutionContext) -> Result<()> {
             topgrade_path,
             "--only",
             "system",
+            "--no-self-update",
+            "--skip-notify",
         ];
         if ctx.config().yes(Step::Toolbx) {
             args.push("--yes");
         }
 
-        let _output = ctx.run_type().execute(&toolbx).args(&args).check_run();
+        ctx.run_type().execute(&toolbx).args(&args).status_checked()?;
     }
 
     Ok(())

src/steps/upgrade.vim

@@ -1,3 +1,14 @@
+" AstroUpdate calls a plugin manager - Lazy as of this writing. So we check for it before
+" others. Add to init.lua:
+" updater = {
+"   skip_prompts = true,
+" },
+if exists(":AstroUpdate")
+   echo "AstroUpdate"
+   AstroUpdate
+   quitall
+endif
+
 if exists(":NeoBundleUpdate")
     echo "NeoBundle"
     NeoBundleUpdate
@@ -33,9 +44,9 @@ if exists(":PaqUpdate")
     PaqUpdate
 endif
 
-if exists(":CocUpdateSync")
-    echo "CocUpdateSync"
-    CocUpdateSync
+if exists(":Lazy")
+    echo "Lazy Update"
+    Lazy! sync | qa
 endif
 
 if exists(':PackerSync')

src/steps/vim.rs

@@ -1,38 +1,37 @@
+use crate::command::CommandExt;
 use crate::error::{SkipStep, TopgradeError};
-use anyhow::Result;
+use crate::HOME_DIR;
+use color_eyre::eyre::Result;
+use etcetera::base_strategy::BaseStrategy;
 
-use crate::executor::{CommandExt, Executor, ExecutorOutput, RunType};
+use crate::executor::{Executor, ExecutorOutput};
 use crate::terminal::print_separator;
 use crate::{
     execution_context::ExecutionContext,
     utils::{require, PathExt},
 };
-use directories::BaseDirs;
-use log::debug;
 use std::path::PathBuf;
 use std::{
     io::{self, Write},
     process::Command,
 };
+use tracing::debug;
 
 const UPGRADE_VIM: &str = include_str!("upgrade.vim");
 
-pub fn vimrc(base_dirs: &BaseDirs) -> Result<PathBuf> {
-    base_dirs
-        .home_dir()
+pub fn vimrc() -> Result<PathBuf> {
+    HOME_DIR
         .join(".vimrc")
         .require()
-        .or_else(|_| base_dirs.home_dir().join(".vim/vimrc").require())
+        .or_else(|_| HOME_DIR.join(".vim/vimrc").require())
 }
 
-fn nvimrc(base_dirs: &BaseDirs) -> Result<PathBuf> {
+fn nvimrc() -> Result<PathBuf> {
     #[cfg(unix)]
-        let base_dir =
-        // Bypass directories crate as nvim doesn't use the macOS-specific directories.
-        std::env::var_os("XDG_CONFIG_HOME").map_or_else(|| base_dirs.home_dir().join(".config"), PathBuf::from);
+    let base_dir = crate::XDG_DIRS.config_dir();
 
     #[cfg(windows)]
-    let base_dir = base_dirs.cache_dir();
+    let base_dir = crate::WINDOWS_DIRS.cache_dir();
 
     base_dir
         .join("nvim/init.vim")
@@ -63,7 +62,7 @@ fn upgrade(command: &mut Executor, ctx: &ExecutionContext) -> Result<()> {
         }
 
         if !status.success() {
-            return Err(TopgradeError::ProcessFailed(status).into());
+            return Err(TopgradeError::ProcessFailed(command.get_program(), status).into());
         } else {
             println!("Plugins upgraded")
         }
@@ -73,7 +72,7 @@ fn upgrade(command: &mut Executor, ctx: &ExecutionContext) -> Result<()> {
 }
 
 pub fn upgrade_ultimate_vimrc(ctx: &ExecutionContext) -> Result<()> {
-    let config_dir = ctx.base_dirs().home_dir().join(".vim_runtime").require()?;
+    let config_dir = HOME_DIR.join(".vim_runtime").require()?;
     let git = require("git")?;
     let python = require("python3")?;
     let update_plugins = config_dir.join("update_plugins.py").require()?;
@@ -84,35 +83,35 @@ pub fn upgrade_ultimate_vimrc(ctx: &ExecutionContext) -> Result<()> {
         .execute(&git)
         .current_dir(&config_dir)
         .args(["reset", "--hard"])
-        .check_run()?;
+        .status_checked()?;
     ctx.run_type()
         .execute(&git)
         .current_dir(&config_dir)
         .args(["clean", "-d", "--force"])
-        .check_run()?;
+        .status_checked()?;
     ctx.run_type()
         .execute(&git)
         .current_dir(&config_dir)
         .args(["pull", "--rebase"])
-        .check_run()?;
+        .status_checked()?;
     ctx.run_type()
         .execute(python)
         .current_dir(config_dir)
         .arg(update_plugins)
-        .check_run()?;
+        .status_checked()?;
 
     Ok(())
 }
 
-pub fn upgrade_vim(base_dirs: &BaseDirs, ctx: &ExecutionContext) -> Result<()> {
+pub fn upgrade_vim(ctx: &ExecutionContext) -> Result<()> {
     let vim = require("vim")?;
 
-    let output = Command::new(&vim).arg("--version").check_output()?;
-    if !output.starts_with("VIM") {
+    let output = Command::new(&vim).arg("--version").output_checked_utf8()?;
+    if !output.stdout.starts_with("VIM") {
         return Err(SkipStep(String::from("vim binary might be actually nvim")).into());
     }
 
-    let vimrc = vimrc(base_dirs)?;
+    let vimrc = vimrc()?;
 
     print_separator("Vim");
     upgrade(
@@ -126,9 +125,9 @@ pub fn upgrade_vim(base_dirs: &BaseDirs, ctx: &ExecutionContext) -> Result<()> {
     )
 }
 
-pub fn upgrade_neovim(base_dirs: &BaseDirs, ctx: &ExecutionContext) -> Result<()> {
+pub fn upgrade_neovim(ctx: &ExecutionContext) -> Result<()> {
     let nvim = require("nvim")?;
-    let nvimrc = nvimrc(base_dirs)?;
+    let nvimrc = nvimrc()?;
 
     print_separator("Neovim");
     upgrade(
@@ -142,10 +141,10 @@ pub fn upgrade_neovim(base_dirs: &BaseDirs, ctx: &ExecutionContext) -> Result<()
     )
 }
 
-pub fn run_voom(_base_dirs: &BaseDirs, run_type: RunType) -> Result<()> {
+pub fn run_voom(ctx: &ExecutionContext) -> Result<()> {
     let voom = require("voom")?;
 
     print_separator("voom");
 
-    run_type.execute(voom).arg("update").check_run()
+    ctx.run_type().execute(voom).arg("update").status_checked()
 }

src/steps/zsh.rs

@@ -1,142 +1,214 @@
+use std::env;
+use std::path::PathBuf;
+use std::process::Command;
+
+use color_eyre::eyre::Result;
+use tracing::debug;
+use walkdir::WalkDir;
+
+use crate::command::CommandExt;
 use crate::execution_context::ExecutionContext;
-use crate::executor::{CommandExt, RunType};
 use crate::git::Repositories;
 use crate::terminal::print_separator;
 use crate::utils::{require, PathExt};
-use anyhow::Result;
-use directories::BaseDirs;
-use log::debug;
-use std::env;
-use std::path::{Path, PathBuf};
-use std::process::Command;
-use walkdir::WalkDir;
+use crate::HOME_DIR;
 
-pub fn run_zr(base_dirs: &BaseDirs, run_type: RunType) -> Result<()> {
+pub fn run_zr(ctx: &ExecutionContext) -> Result<()> {
     let zsh = require("zsh")?;
 
     require("zr")?;
 
     print_separator("zr");
 
-    let cmd = format!("source {} && zr --update", zshrc(base_dirs).display());
-    run_type.execute(zsh).args(["-l", "-c", cmd.as_str()]).check_run()
+    let cmd = format!("source {} && zr --update", zshrc().display());
+    ctx.run_type()
+        .execute(zsh)
+        .args(["-l", "-c", cmd.as_str()])
+        .status_checked()
 }
 
-pub fn zshrc(base_dirs: &BaseDirs) -> PathBuf {
+fn zdotdir() -> PathBuf {
     env::var("ZDOTDIR")
-        .map(|p| Path::new(&p).join(".zshrc"))
-        .unwrap_or_else(|_| base_dirs.home_dir().join(".zshrc"))
+        .map(PathBuf::from)
+        .unwrap_or_else(|_| HOME_DIR.clone())
 }
 
-pub fn run_antibody(run_type: RunType) -> Result<()> {
+pub fn zshrc() -> PathBuf {
+    zdotdir().join(".zshrc")
+}
+
+pub fn run_antidote(ctx: &ExecutionContext) -> Result<()> {
+    let zsh = require("zsh")?;
+    let mut antidote = zdotdir().join(".antidote").require()?;
+    antidote.push("antidote.zsh");
+
+    print_separator("antidote");
+
+    ctx.run_type()
+        .execute(zsh)
+        .arg("-c")
+        .arg(format!("source {} && antidote update", antidote.display()))
+        .status_checked()
+}
+
+pub fn run_antibody(ctx: &ExecutionContext) -> Result<()> {
     require("zsh")?;
     let antibody = require("antibody")?;
 
     print_separator("antibody");
 
-    run_type.execute(antibody).arg("update").check_run()
+    ctx.run_type().execute(antibody).arg("update").status_checked()
 }
 
-pub fn run_antigen(base_dirs: &BaseDirs, run_type: RunType) -> Result<()> {
+pub fn run_antigen(ctx: &ExecutionContext) -> Result<()> {
     let zsh = require("zsh")?;
-    let zshrc = zshrc(base_dirs).require()?;
+    let zshrc = zshrc().require()?;
     env::var("ADOTDIR")
         .map(PathBuf::from)
-        .unwrap_or_else(|_| base_dirs.home_dir().join("antigen.zsh"))
+        .unwrap_or_else(|_| HOME_DIR.join("antigen.zsh"))
         .require()?;
 
     print_separator("antigen");
 
     let cmd = format!("source {} && (antigen selfupdate ; antigen update)", zshrc.display());
-    run_type.execute(zsh).args(["-l", "-c", cmd.as_str()]).check_run()
+    ctx.run_type()
+        .execute(zsh)
+        .args(["-l", "-c", cmd.as_str()])
+        .status_checked()
 }
 
-pub fn run_zgenom(base_dirs: &BaseDirs, run_type: RunType) -> Result<()> {
+pub fn run_zgenom(ctx: &ExecutionContext) -> Result<()> {
     let zsh = require("zsh")?;
-    let zshrc = zshrc(base_dirs).require()?;
+    let zshrc = zshrc().require()?;
     env::var("ZGEN_SOURCE")
         .map(PathBuf::from)
-        .unwrap_or_else(|_| base_dirs.home_dir().join(".zgenom"))
+        .unwrap_or_else(|_| HOME_DIR.join(".zgenom"))
         .require()?;
 
     print_separator("zgenom");
 
     let cmd = format!("source {} && zgenom selfupdate && zgenom update", zshrc.display());
-    run_type.execute(zsh).args(["-l", "-c", cmd.as_str()]).check_run()
+    ctx.run_type()
+        .execute(zsh)
+        .args(["-l", "-c", cmd.as_str()])
+        .status_checked()
 }
 
-pub fn run_zplug(base_dirs: &BaseDirs, run_type: RunType) -> Result<()> {
+pub fn run_zplug(ctx: &ExecutionContext) -> Result<()> {
     let zsh = require("zsh")?;
-    zshrc(base_dirs).require()?;
+    zshrc().require()?;
 
     env::var("ZPLUG_HOME")
         .map(PathBuf::from)
-        .unwrap_or_else(|_| base_dirs.home_dir().join(".zplug"))
+        .unwrap_or_else(|_| HOME_DIR.join(".zplug"))
         .require()?;
 
     print_separator("zplug");
 
-    run_type.execute(zsh).args(["-i", "-c", "zplug update"]).check_run()
+    ctx.run_type()
+        .execute(zsh)
+        .args(["-i", "-c", "zplug update"])
+        .status_checked()
 }
 
-pub fn run_zinit(base_dirs: &BaseDirs, run_type: RunType) -> Result<()> {
+pub fn run_zinit(ctx: &ExecutionContext) -> Result<()> {
     let zsh = require("zsh")?;
-    let zshrc = zshrc(base_dirs).require()?;
+    let zshrc = zshrc().require()?;
 
     env::var("ZINIT_HOME")
         .map(PathBuf::from)
-        .unwrap_or_else(|_| base_dirs.home_dir().join(".zinit"))
+        .unwrap_or_else(|_| HOME_DIR.join(".zinit"))
         .require()?;
 
     print_separator("zinit");
 
     let cmd = format!("source {} && zinit self-update && zinit update --all", zshrc.display(),);
-    run_type.execute(zsh).args(["-i", "-c", cmd.as_str()]).check_run()
+    ctx.run_type()
+        .execute(zsh)
+        .args(["-i", "-c", cmd.as_str()])
+        .status_checked()
 }
 
-pub fn run_zi(base_dirs: &BaseDirs, run_type: RunType) -> Result<()> {
+pub fn run_zi(ctx: &ExecutionContext) -> Result<()> {
     let zsh = require("zsh")?;
-    let zshrc = zshrc(base_dirs).require()?;
+    let zshrc = zshrc().require()?;
 
-    base_dirs.home_dir().join(".zi").require()?;
+    HOME_DIR.join(".zi").require()?;
 
     print_separator("zi");
 
     let cmd = format!("source {} && zi self-update && zi update --all", zshrc.display(),);
-    run_type.execute(zsh).args(["-i", "-c", &cmd]).check_run()
+    ctx.run_type().execute(zsh).args(["-i", "-c", &cmd]).status_checked()
 }
 
-pub fn run_zim(base_dirs: &BaseDirs, run_type: RunType) -> Result<()> {
+pub fn run_zim(ctx: &ExecutionContext) -> Result<()> {
     let zsh = require("zsh")?;
     env::var("ZIM_HOME")
         .or_else(|_| {
             Command::new("zsh")
+                // TODO: Should these be quoted?
                 .args(["-c", "[[ -n ${ZIM_HOME} ]] && print -n ${ZIM_HOME}"])
-                .check_output()
+                .output_checked_utf8()
+                .map(|o| o.stdout)
         })
         .map(PathBuf::from)
-        .unwrap_or_else(|_| base_dirs.home_dir().join(".zim"))
+        .unwrap_or_else(|_| HOME_DIR.join(".zim"))
         .require()?;
 
     print_separator("zim");
 
-    run_type
+    ctx.run_type()
         .execute(zsh)
         .args(["-i", "-c", "zimfw upgrade && zimfw update"])
-        .check_run()
+        .status_checked()
 }
 
 pub fn run_oh_my_zsh(ctx: &ExecutionContext) -> Result<()> {
     require("zsh")?;
-    let oh_my_zsh = ctx.base_dirs().home_dir().join(".oh-my-zsh").require()?;
+
+    // When updating `oh-my-zsh` on a remote machine through topgrade, the
+    // following processes will be created:
+    //
+    // SSH -> ZSH -> ZSH ($SHELL) -> topgrade -> ZSH
+    //
+    // The first ZSH process, won't source zshrc (as it is a login shell),
+    // and thus it won't have the ZSH environment variable, as a result, the
+    // children processes won't get it either, so we source the zshrc and set
+    // the ZSH variable for topgrade here.
+    if ctx.under_ssh() {
+        let zshrc_path = zshrc().require()?;
+        let output = Command::new("zsh")
+            .args([
+                "-c",
+                // ` > /dev/null` is used in case the user's zshrc will have some stdout output.
+                format!(
+                    "source {} > /dev/null && export -p | grep ZSH > /dev/null && echo $ZSH",
+                    zshrc_path.display()
+                )
+                .as_str(),
+            ])
+            .output_checked_utf8()?;
+        let zsh_env = output.stdout.trim();
+        if !zsh_env.is_empty() {
+            env::set_var("ZSH", zsh_env);
+        }
+    }
+
+    let oh_my_zsh = env::var("ZSH")
+        .map(PathBuf::from)
+        // default to `~/.oh-my-zsh`
+        .unwrap_or(HOME_DIR.join(".oh-my-zsh"))
+        .require()?;
 
     print_separator("oh-my-zsh");
 
     let custom_dir = env::var::<_>("ZSH_CUSTOM")
         .or_else(|_| {
             Command::new("zsh")
+                // TODO: Should these be quoted?
                 .args(["-c", "test $ZSH_CUSTOM && echo -n $ZSH_CUSTOM"])
-                .check_output()
+                .output_checked_utf8()
+                .map(|o| o.stdout)
         })
         .map(PathBuf::from)
         .unwrap_or_else(|e| {
@@ -155,18 +227,21 @@ pub fn run_oh_my_zsh(ctx: &ExecutionContext) -> Result<()> {
 
     for entry in WalkDir::new(custom_dir).max_depth(2) {
         let entry = entry?;
-        custom_repos.insert_if_repo(entry.path());
+        custom_repos.insert_if_repo(entry.path(), crate::steps::git::GitAction::Pull);
     }
 
-    custom_repos.remove(&oh_my_zsh.to_string_lossy());
-    if !custom_repos.is_empty() {
+    custom_repos.remove_from_pull(&oh_my_zsh.to_string_lossy());
+    if !custom_repos.pull_is_empty() {
         println!("Pulling custom plugins and themes");
         ctx.git().multi_pull(&custom_repos, ctx)?;
     }
 
     ctx.run_type()
         .execute("zsh")
-        .env("ZSH", &oh_my_zsh)
         .arg(&oh_my_zsh.join("tools/upgrade.sh"))
-        .check_run_with_codes(&[80])
+        // oh-my-zsh returns 80 when it is already updated and no changes pulled
+        // in this update.
+        // See this comment: https://github.com/r-darwish/topgrade/issues/569#issuecomment-736756731
+        // for more information.
+        .status_checked_with_codes(&[80])
 }

src/sudo.rs

@@ -0,0 +1,125 @@
+use std::ffi::OsStr;
+use std::path::Path;
+use std::path::PathBuf;
+
+use color_eyre::eyre::Context;
+use color_eyre::eyre::Result;
+use serde::Deserialize;
+use strum::AsRefStr;
+
+use crate::command::CommandExt;
+use crate::execution_context::ExecutionContext;
+use crate::executor::Executor;
+use crate::terminal::print_separator;
+use crate::utils::which;
+
+#[derive(Clone, Debug)]
+pub struct Sudo {
+    /// The path to the `sudo` binary.
+    path: PathBuf,
+    /// The type of program being used as `sudo`.
+    kind: SudoKind,
+}
+
+impl Sudo {
+    /// Get the `sudo` binary for this platform.
+    pub fn detect() -> Option<Self> {
+        which("doas")
+            .map(|p| (p, SudoKind::Doas))
+            .or_else(|| which("sudo").map(|p| (p, SudoKind::Sudo)))
+            .or_else(|| which("gsudo").map(|p| (p, SudoKind::Gsudo)))
+            .or_else(|| which("pkexec").map(|p| (p, SudoKind::Pkexec)))
+            .or_else(|| which("please").map(|p| (p, SudoKind::Please)))
+            .map(|(path, kind)| Self { path, kind })
+    }
+
+    /// Create Sudo from SudoKind, if found in the system
+    pub fn new(kind: SudoKind) -> Option<Self> {
+        which(kind.as_ref()).map(|path| Self { path, kind })
+    }
+
+    /// Elevate permissions with `sudo`.
+    ///
+    /// This helps prevent blocking `sudo` prompts from stopping the run in the middle of a
+    /// step.
+    ///
+    /// See: https://github.com/topgrade-rs/topgrade/issues/205
+    pub fn elevate(&self, ctx: &ExecutionContext) -> Result<()> {
+        print_separator("Sudo");
+        let mut cmd = ctx.run_type().execute(self);
+        match self.kind {
+            SudoKind::Doas => {
+                // `doas` doesn't have anything like `sudo -v` to cache credentials,
+                // so we just execute a dummy `echo` command so we have something
+                // unobtrusive to run.
+                // See: https://man.openbsd.org/doas
+                cmd.arg("echo");
+            }
+            SudoKind::Sudo => {
+                // From `man sudo` on macOS:
+                //   -v, --validate
+                //   Update the user's cached credentials, authenticating the user
+                //   if necessary.  For the sudoers plugin, this extends the sudo
+                //   timeout for another 5 minutes by default, but does not run a
+                //   command.  Not all security policies support cached credentials.
+                cmd.arg("-v");
+            }
+            SudoKind::Gsudo => {
+                // Shows current user, cache and console status.
+                // See: https://gerardog.github.io/gsudo/docs/usage
+                cmd.arg("status");
+            }
+            SudoKind::Pkexec => {
+                // I don't think this does anything; `pkexec` usually asks for
+                // authentication every time, although it can be configured
+                // differently.
+                //
+                // See the note for `doas` above.
+                //
+                // See: https://linux.die.net/man/1/pkexec
+                cmd.arg("echo");
+            }
+            SudoKind::Please => {
+                // From `man please`
+                //   -w, --warm
+                //   Warm the access token and exit.
+                cmd.arg("-w");
+            }
+        }
+        cmd.status_checked().wrap_err("Failed to elevate permissions")
+    }
+
+    /// Execute a command with `sudo`.
+    pub fn execute_elevated(&self, ctx: &ExecutionContext, command: &Path, interactive: bool) -> Executor {
+        let mut cmd = ctx.run_type().execute(self);
+
+        if let SudoKind::Sudo = self.kind {
+            cmd.arg("--preserve-env=DIFFPROG");
+        }
+
+        if interactive {
+            cmd.arg("-i");
+        }
+
+        cmd.arg(command);
+
+        cmd
+    }
+}
+
+#[derive(Clone, Copy, Debug, Deserialize, AsRefStr)]
+#[serde(rename_all = "lowercase")]
+#[strum(serialize_all = "lowercase")]
+pub enum SudoKind {
+    Doas,
+    Sudo,
+    Gsudo,
+    Pkexec,
+    Please,
+}
+
+impl AsRef<OsStr> for Sudo {
+    fn as_ref(&self) -> &OsStr {
+        self.path.as_ref()
+    }
+}

src/terminal.rs

@@ -1,24 +1,22 @@
 use std::cmp::{max, min};
 use std::env;
 use std::io::{self, Write};
-#[cfg(target_os = "linux")]
-use std::path::PathBuf;
 use std::process::Command;
 use std::sync::Mutex;
 use std::time::Duration;
 
 use chrono::{Local, Timelike};
+use color_eyre::eyre;
+use color_eyre::eyre::Context;
 use console::{style, Key, Term};
 use lazy_static::lazy_static;
-use log::{debug, error};
-#[cfg(target_os = "macos")]
 use notify_rust::{Notification, Timeout};
+use tracing::{debug, error};
 #[cfg(windows)]
 use which_crate::which;
 
+use crate::command::CommandExt;
 use crate::report::StepResult;
-#[cfg(target_os = "linux")]
-use crate::utils::which;
 
 lazy_static! {
     static ref TERMINAL: Mutex<Terminal> = Mutex::new(Terminal::new());
@@ -34,13 +32,8 @@ pub fn shell() -> &'static str {
     which("pwsh").map(|_| "pwsh").unwrap_or("powershell")
 }
 
-pub fn run_shell() {
-    Command::new(shell())
-        .env("IN_TOPGRADE", "1")
-        .spawn()
-        .unwrap()
-        .wait()
-        .unwrap();
+pub fn run_shell() -> eyre::Result<()> {
+    Command::new(shell()).env("IN_TOPGRADE", "1").status_checked()
 }
 
 struct Terminal {
@@ -50,8 +43,6 @@ struct Terminal {
     set_title: bool,
     display_time: bool,
     desktop_notification: bool,
-    #[cfg(target_os = "linux")]
-    notify_send: Option<PathBuf>,
 }
 
 impl Terminal {
@@ -61,13 +52,11 @@ impl Terminal {
             width: term.size_checked().map(|(_, w)| w),
             term,
             prefix: env::var("TOPGRADE_PREFIX")
-                .map(|prefix| format!("({}) ", prefix))
+                .map(|prefix| format!("({prefix}) "))
                 .unwrap_or_else(|_| String::new()),
             set_title: true,
             display_time: true,
             desktop_notification: false,
-            #[cfg(target_os = "linux")]
-            notify_send: which("notify-send"),
         }
     }
 
@@ -83,13 +72,11 @@ impl Terminal {
         self.display_time = display_time
     }
 
-    #[allow(unused_variables)]
     fn notify_desktop<P: AsRef<str>>(&self, message: P, timeout: Option<Duration>) {
         debug!("Desktop notification: {}", message.as_ref());
-        cfg_if::cfg_if! {
-            if #[cfg(target_os = "macos")] {
         let mut notification = Notification::new();
-                notification.summary("Topgrade")
+        notification
+            .summary("Topgrade")
             .body(message.as_ref())
             .appname("topgrade");
 
@@ -97,19 +84,6 @@ impl Terminal {
             notification.timeout(Timeout::Milliseconds(timeout.as_millis() as u32));
         }
         notification.show().ok();
-            } else if #[cfg(target_os = "linux")] {
-                if let Some(ns) = self.notify_send.as_ref() {
-                    let mut command = Command::new(ns);
-                    if let Some(timeout) = timeout {
-                        command.arg("-t");
-                        command.arg(format!("{}", timeout.as_millis()));
-                    }
-                    command.args(["-a", "Topgrade", "Topgrade"]);
-                    command.arg(message.as_ref());
-                    command.output().ok();
-                }
-            }
-        }
     }
 
     fn print_separator<P: AsRef<str>>(&mut self, message: P) {
@@ -142,7 +116,7 @@ impl Terminal {
                     .write_fmt(format_args!(
                         "{}\n",
                         style(format_args!(
-                            "\n―― {} {:―^border$}",
+                            "\n── {} {:─^border$}",
                             message,
                             "",
                             border = max(
@@ -158,11 +132,24 @@ impl Terminal {
                     .ok();
             }
             None => {
-                self.term.write_fmt(format_args!("―― {} ――\n", message)).ok();
+                self.term.write_fmt(format_args!("―― {message} ――\n")).ok();
             }
         }
     }
 
+    #[allow(dead_code)]
+    fn print_error<P: AsRef<str>, Q: AsRef<str>>(&mut self, key: Q, message: P) {
+        let key = key.as_ref();
+        let message = message.as_ref();
+        self.term
+            .write_fmt(format_args!(
+                "{} {}",
+                style(format!("{key} failed:")).red().bold(),
+                message
+            ))
+            .ok();
+    }
+
     #[allow(dead_code)]
     fn print_warning<P: AsRef<str>>(&mut self, message: P) {
         let message = message.as_ref();
@@ -201,7 +188,7 @@ impl Terminal {
         self.term
             .write_fmt(format_args!(
                 "{}",
-                style(format!("{} (y)es/(N)o", question,)).yellow().bold()
+                style(format!("{question} (y)es/(N)o",)).yellow().bold()
             ))
             .ok();
 
@@ -214,7 +201,7 @@ impl Terminal {
         }
     }
     #[allow(unused_variables)]
-    fn should_retry(&mut self, interrupted: bool, step_name: &str) -> Result<bool, io::Error> {
+    fn should_retry(&mut self, interrupted: bool, step_name: &str) -> eyre::Result<bool> {
         if self.width.is_none() {
             return Ok(false);
         }
@@ -223,31 +210,35 @@ impl Terminal {
             self.term.set_title("Topgrade - Awaiting user");
         }
 
-        self.notify_desktop(format!("{} failed", step_name), None);
+        if self.desktop_notification {
+            self.notify_desktop(format!("{step_name} failed"), None);
+        }
 
-        self.term
-            .write_fmt(format_args!(
-                "\n{}",
-                style(format!("{}Retry? (y)es/(N)o/(s)hell/(q)uit", self.prefix))
+        let prompt_inner = style(format!("{}Retry? (y)es/(N)o/(s)hell/(q)uit", self.prefix))
             .yellow()
-                    .bold()
-            ))
-            .ok();
+            .bold();
+
+        self.term.write_fmt(format_args!("\n{prompt_inner}")).ok();
 
         let answer = loop {
             match self.term.read_key() {
                 Ok(Key::Char('y')) | Ok(Key::Char('Y')) => break Ok(true),
                 Ok(Key::Char('s')) | Ok(Key::Char('S')) => {
                     println!("\n\nDropping you to shell. Fix what you need and then exit the shell.\n");
-                    run_shell();
+                    if let Err(err) = run_shell().context("Failed to run shell") {
+                        self.term.write_fmt(format_args!("{err:?}\n{prompt_inner}")).ok();
+                    } else {
                         break Ok(true);
                     }
+                }
                 Ok(Key::Char('n')) | Ok(Key::Char('N')) | Ok(Key::Enter) => break Ok(false),
                 Err(e) => {
                     error!("Error reading from terminal: {}", e);
                     break Ok(false);
                 }
-                Ok(Key::Char('q')) | Ok(Key::Char('Q')) => return Err(io::Error::from(io::ErrorKind::Interrupted)),
+                Ok(Key::Char('q')) | Ok(Key::Char('Q')) => {
+                    return Err(io::Error::from(io::ErrorKind::Interrupted)).context("Quit from user input")
+                }
                 _ => (),
             }
         };
@@ -268,7 +259,7 @@ impl Default for Terminal {
     }
 }
 
-pub fn should_retry(interrupted: bool, step_name: &str) -> Result<bool, io::Error> {
+pub fn should_retry(interrupted: bool, step_name: &str) -> eyre::Result<bool> {
     TERMINAL.lock().unwrap().should_retry(interrupted, step_name)
 }
 
@@ -276,6 +267,11 @@ pub fn print_separator<P: AsRef<str>>(message: P) {
     TERMINAL.lock().unwrap().print_separator(message)
 }
 
+#[allow(dead_code)]
+pub fn print_error<P: AsRef<str>, Q: AsRef<str>>(key: Q, message: P) {
+    TERMINAL.lock().unwrap().print_error(key, message)
+}
+
 #[allow(dead_code)]
 pub fn print_warning<P: AsRef<str>>(message: P) {
     TERMINAL.lock().unwrap().print_warning(message)

src/utils.rs

@@ -1,46 +1,22 @@
-use crate::error::{SkipStep, TopgradeError};
-use anyhow::Result;
-
-use log::{debug, error};
 use std::env;
 use std::ffi::OsStr;
 use std::fmt::Debug;
 use std::path::{Path, PathBuf};
-use std::process::{ExitStatus, Output};
+use std::process::Command;
 
-pub trait Check {
-    fn check(self) -> Result<()>;
-}
+use color_eyre::eyre::Result;
 
-impl Check for Output {
-    fn check(self) -> Result<()> {
-        self.status.check()
-    }
-}
+use tracing::{debug, error};
+use tracing_subscriber::fmt::format::FmtSpan;
+use tracing_subscriber::layer::SubscriberExt;
+use tracing_subscriber::reload::{Handle, Layer};
+use tracing_subscriber::util::SubscriberInitExt;
+use tracing_subscriber::{fmt, Registry};
+use tracing_subscriber::{registry, EnvFilter};
 
-pub trait CheckWithCodes {
-    fn check_with_codes(self, codes: &[i32]) -> Result<()>;
-}
-
-// Anything that implements CheckWithCodes also implements check
-// if check_with_codes is given an empty array of codes to check
-impl<T: CheckWithCodes> Check for T {
-    fn check(self) -> Result<()> {
-        self.check_with_codes(&[])
-    }
-}
-
-impl CheckWithCodes for ExitStatus {
-    fn check_with_codes(self, codes: &[i32]) -> Result<()> {
-        // Set the default to be -1 because the option represents a signal termination
-        let code = self.code().unwrap_or(-1);
-        if self.success() || codes.contains(&code) {
-            Ok(())
-        } else {
-            Err(TopgradeError::ProcessFailed(self).into())
-        }
-    }
-}
+use crate::command::CommandExt;
+use crate::config::DEFAULT_LOG_LEVEL;
+use crate::error::SkipStep;
 
 pub trait PathExt
 where
@@ -102,13 +78,6 @@ pub fn which<T: AsRef<OsStr> + Debug>(binary_name: T) -> Option<PathBuf> {
     }
 }
 
-pub fn sudo() -> Option<PathBuf> {
-    which("doas")
-        .or_else(|| which("sudo"))
-        .or_else(|| which("gsudo"))
-        .or_else(|| which("pkexec"))
-}
-
 pub fn editor() -> Vec<String> {
     env::var("EDITOR")
         .unwrap_or_else(|_| String::from(if cfg!(windows) { "notepad" } else { "vi" }))
@@ -142,3 +111,197 @@ pub fn require_option<T>(option: Option<T>, cause: String) -> Result<T> {
         Err(SkipStep(cause).into())
     }
 }
+
+pub fn string_prepend_str(string: &mut String, s: &str) {
+    let mut new_string = String::with_capacity(string.len() + s.len());
+    new_string.push_str(s);
+    new_string.push_str(string);
+    *string = new_string;
+}
+
+/* sys-info-rs
+ *
+ * Copyright (c) 2015 Siyu Wang
+ *
+ * Permission is hereby granted, free of charge, to any person obtaining a copy
+ * of this software and associated documentation files (the "Software"), to deal
+ * in the Software without restriction, including without limitation the rights
+ * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+ * copies of the Software, and to permit persons to whom the Software is
+ * furnished to do so, subject to the following conditions:
+ *
+ * The above copyright notice and this permission notice shall be included in all
+ * copies or substantial portions of the Software.
+ *
+ * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+ * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+ * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+ * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+ * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+ * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+ * SOFTWARE.
+ */
+#[cfg(target_family = "unix")]
+pub fn hostname() -> Result<String> {
+    use std::ffi;
+    extern crate libc;
+
+    unsafe {
+        let buf_size = libc::sysconf(libc::_SC_HOST_NAME_MAX) as usize;
+        let mut buf = Vec::<u8>::with_capacity(buf_size + 1);
+
+        if libc::gethostname(buf.as_mut_ptr() as *mut libc::c_char, buf_size) < 0 {
+            return Err(SkipStep(format!("Failed to get hostname: {}", std::io::Error::last_os_error())).into());
+        }
+        let hostname_len = libc::strnlen(buf.as_ptr() as *const libc::c_char, buf_size);
+        buf.set_len(hostname_len);
+
+        Ok(ffi::CString::new(buf).unwrap().into_string().unwrap())
+    }
+}
+
+#[cfg(target_family = "windows")]
+pub fn hostname() -> Result<String> {
+    Command::new("hostname")
+        .output_checked_utf8()
+        .map_err(|err| SkipStep(format!("Failed to get hostname: {err}")).into())
+        .map(|output| output.stdout.trim().to_owned())
+}
+
+pub mod merge_strategies {
+    use merge::Merge;
+
+    use crate::config::Commands;
+
+    /// Prepends right to left (both Option<Vec<T>>)
+    pub fn vec_prepend_opt<T>(left: &mut Option<Vec<T>>, right: Option<Vec<T>>) {
+        if let Some(left_vec) = left {
+            if let Some(mut right_vec) = right {
+                right_vec.append(left_vec);
+                let _ = std::mem::replace(left, Some(right_vec));
+            }
+        } else {
+            *left = right;
+        }
+    }
+
+    /// Appends an Option<String> to another Option<String>
+    pub fn string_append_opt(left: &mut Option<String>, right: Option<String>) {
+        if let Some(left_str) = left {
+            if let Some(right_str) = right {
+                left_str.push(' ');
+                left_str.push_str(&right_str);
+            }
+        } else {
+            *left = right;
+        }
+    }
+
+    pub fn inner_merge_opt<T>(left: &mut Option<T>, right: Option<T>)
+    where
+        T: Merge,
+    {
+        if let Some(ref mut left_inner) = left {
+            if let Some(right_inner) = right {
+                left_inner.merge(right_inner);
+            }
+        } else {
+            *left = right;
+        }
+    }
+
+    pub fn commands_merge_opt(left: &mut Option<Commands>, right: Option<Commands>) {
+        if let Some(ref mut left_inner) = left {
+            if let Some(right_inner) = right {
+                left_inner.extend(right_inner);
+            }
+        } else {
+            *left = right;
+        }
+    }
+}
+
+// Skip causes
+// TODO: Put them in a better place when we have more of them
+pub const REQUIRE_SUDO: &str = "Require sudo or counterpart but not found, skip";
+
+/// Return `Err(SkipStep)` if `python` is a Python 2 or shim.
+///
+/// # Shim
+/// On Windows, if you install `python` through `winget`, an actual `python`
+/// is installed as well as a `python3` shim. Shim is invokable, but when you
+/// execute it, the Microsoft App Store will be launched instead of a Python
+/// shell.
+///
+/// We do this check through `python -V`, a shim will just give `Python` with
+/// no version number.
+pub fn check_is_python_2_or_shim(python: PathBuf) -> Result<PathBuf> {
+    let output = Command::new(&python).arg("-V").output_checked_utf8()?;
+    // "Python x.x.x\n"
+    let stdout = output.stdout;
+    // ["Python"] or ["Python", "x.x.x"], the newline char is trimmed.
+    let mut split = stdout.split_whitespace();
+
+    if let Some(version) = split.nth(1) {
+        let major_version = version
+            .split('.')
+            .next()
+            .expect("Should have a major version number")
+            .parse::<u32>()
+            .expect("Major version should be a valid number");
+        if major_version == 2 {
+            return Err(SkipStep(format!("{} is a Python 2, skip.", python.display())).into());
+        }
+    } else {
+        // No version number, is a shim
+        return Err(SkipStep(format!("{} is a Python shim, skip.", python.display())).into());
+    }
+
+    Ok(python)
+}
+
+/// Set up the tracing logger
+///
+/// # Return value
+/// A reload handle will be returned so that we can change the log level at
+/// runtime.
+pub fn install_tracing(filter_directives: &str) -> Result<Handle<EnvFilter, Registry>> {
+    let env_filter = EnvFilter::try_new(filter_directives)
+        .or_else(|_| EnvFilter::try_from_default_env())
+        .or_else(|_| EnvFilter::try_new(DEFAULT_LOG_LEVEL))?;
+
+    let fmt_layer = fmt::layer()
+        .with_target(false)
+        .with_span_events(FmtSpan::NEW | FmtSpan::CLOSE)
+        .without_time();
+
+    let (filter, reload_handle) = Layer::new(env_filter);
+
+    registry().with(filter).with(fmt_layer).init();
+
+    Ok(reload_handle)
+}
+
+/// Update the tracing logger with new `filter_directives`.
+pub fn update_tracing(reload_handle: &Handle<EnvFilter, Registry>, filter_directives: &str) -> Result<()> {
+    let new = EnvFilter::try_new(filter_directives)
+        .or_else(|_| EnvFilter::try_from_default_env())
+        .or_else(|_| EnvFilter::try_new(DEFAULT_LOG_LEVEL))?;
+    reload_handle.modify(|old| *old = new)?;
+
+    Ok(())
+}
+
+/// Set up the error handler crate
+pub fn install_color_eyre() -> Result<()> {
+    color_eyre::config::HookBuilder::new()
+        // Don't display the backtrace reminder by default:
+        //   Backtrace omitted. Run with RUST_BACKTRACE=1 environment variable to display it.
+        //   Run with RUST_BACKTRACE=full to include source snippets.
+        .display_env_section(false)
+        // Display location information by default:
+        //   Location:
+        //      src/steps.rs:92
+        .display_location_section(true)
+        .install()
+}

topgrade.8

@@ -1,80 +0,0 @@
-.hy
-.TH "topgrade" "8"
-.SH NAME
-.PP
-Topgrade \- Upgrade everything
-.SH SYNOPSIS
-.PP
-topgrade [\fIoptions\f[]]
-.SH DESCRIPTION
-.PP
-Keeping your system up to date usually involves invoking multiple package managers.
-This results in big, non-portable shell one-liners saved in your shell.
-To remedy this, \fBTopgrade\fR detects which tools you use and runs the appropriate commands to update them.
-.SH OPTIONS
-.TP
-.B \-\-only <only>
-Run only specific steps
-.RS
-.RE
-.TP
-.B \-\-disable <disable>
-Disable specific steps
-.RS
-.RE
-.TP
-.B \-c, \-\-cleanup
-Cleanup temporary or old files
-.RS
-.RE
-.TP
-.B \-n, \-\-dry\-run
-List the commands that would be run
-.RS
-.RE
-.TP
-.B \-\-edit\-config
-Edit the configuration file
-.RS
-.RE
-.TP
-.B \-h, \-\-help
-Print help information
-.RS
-.RE
-.TP
-.B \-k, \-\-keep
-Prompt for a key before exiting
-.RS
-.RE
-.TP
-.B \-\-no\-retry
-Do not ask to retry failed steps
-.RS
-.RE
-.TP
-.B \-t, \-\-tmux
-Run inside tmux
-.RS
-.RE
-.TP
-.B \-V, \-\-version
-Print version information
-.RS
-.RE
-.TP
-.B \-v, \-\-verbose
-Output logs
-.RS
-.RE
-.B \-y, \-\-yes
-Skip package manager's prompts (experimental)
-.SH ARGUMENT FORMAT
-Options can be given in any order.
-A list of steps must be provided as a list of separate arguments, i.e. 'topgrade --only system shell'.
-.SH BUGS
-For a list of bugs see <\fIhttps://github.com/r-darwish/topgrade/issues\fR>.
-.SH AUTHOR
-\fBTopgrade\fR is maintained by Roey Dror (\[aq]r\-darwish\[aq]) and many other contributors.
-You can view the full list at
-<\fIhttps://github.com/r-darwish/topgrade/graphs/contributors\fR>