chore: prepare for v15.0.0 (#843)

* feat: new step Lensfun's database update

* refactor: take 1 as a success exit code

.github/ISSUE_TEMPLATE/bug_report.md

@@ -2,7 +2,7 @@
 name: Bug report
 about: Topgrade is misbehaving
 title: ''
-labels: 'bug'
+labels: 'C-bug'
 assignees: ''
 
 ---
@@ -46,6 +46,18 @@ If you know the possible cause of the issue, please tell us.
 Execute the erroneous command directly to see if the problem persists
 -->
 - [ ] Yes
+- [ ] No
+
+## Did you run topgrade through `Remote Execution`
+
+- [ ] Yes
+- [ ] No
+
+If yes, does the issue still occur when you run topgrade directlly in your
+remote host
+
+- [ ] Yes
+- [ ] No
 
 ## Configuration file (Optional)
 <!-- 

.github/ISSUE_TEMPLATE/feature_request.md

@@ -2,16 +2,20 @@
 name: Feature request
 about: Can you please support...?
 title: ''
-labels: ''
+labels: 'C-feature request'
 assignees: ''
 
 ---
 
 ## I want to suggest a new step
-### Which tool is this about? Where is its repository?
-### Which operating systems are supported by this tool?
-### What should Topgrade do to figure out if the tool needs to be invoked?
-### Which exact commands should Topgrade run?
+
+* Which tool is this about? Where is its repository?
+* Which operating systems are supported by this tool?
+* What should Topgrade do to figure out if the tool needs to be invoked?
+* Which exact commands should Topgrade run?
+* Does it have a `--dry-run` option? i.e., print what should be done and exit
+* Does it need the user to confirm the execution? And does it provide a `--yes`
+  option to skip this step?
 
 ## I want to suggest some general feature
 Topgrade should...

.github/PULL_REQUEST_TEMPLATE.md

@@ -1,13 +1,18 @@
-## Standards checklist:
+## What does this PR do
+
+
+## Standards checklist
 
 - [ ] The PR title is descriptive.
 - [ ] I have read `CONTRIBUTING.md`
-- [ ] The code compiles (`cargo build`)
-- [ ] The code passes rustfmt (`cargo fmt`)
-- [ ] The code passes clippy (`cargo clippy`)
-- [ ] The code passes tests (`cargo test`)
 - [ ] *Optional:* I have tested the code myself
-    - [ ] I also tested that Topgrade skips the step where needed
+ 
+## For new steps
+
+- [ ] *Optional:* Topgrade skips this step where needed
+- [ ] *Optional:* The `--dry-run` option works with this step
+- [ ] *Optional:* The `--yes` option works with this step if it is supported by 
+  the underlying command
 
 If you developed a feature or a bug fix for someone else and you do not have the
 means to test it, please tag this person here.

.github/dependabot.yml

@@ -0,0 +1,10 @@
+# Set update schedule for GitHub Actions
+
+version: 2
+updates:
+
+  - package-ecosystem: "github-actions"
+    directory: "/"
+    schedule:
+      # Check for updates to GitHub Actions every week
+      interval: "weekly"

.github/workflows/check_config_creation_if_not_exists.yml

@@ -1,4 +1,4 @@
-name: Test Configuration File Creation
+name: Check config file creation if not exists
 
 on:
   pull_request:
@@ -12,10 +12,10 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
     - run: |
           CONFIG_PATH=~/.config/topgrade.toml;
           if [ -f "$CONFIG_PATH" ]; then rm $CONFIG_PATH; fi
           cargo build; 
-          ./target/debug/topgrade --dry-run --only system;
+          TOPGRADE_SKIP_BRKC_NOTIFY=true ./target/debug/topgrade --dry-run --only system;
           stat $CONFIG_PATH;

.github/workflows/check_security_vulnerability.yml

@@ -0,0 +1,32 @@
+# This workflow uses actions that are not certified by GitHub.
+# They are provided by a third-party and are governed by
+# separate terms of service, privacy policy, and support
+# documentation.
+
+name: Check Security Vulnerability
+
+on:
+  pull_request:
+  push:
+    branches:
+      - main
+
+jobs:
+  lint:
+    name: DevSkim
+    runs-on: ubuntu-latest
+    permissions:
+      actions: read
+      contents: read
+      security-events: write
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v4
+
+      - name: Run DevSkim scanner
+        uses: microsoft/DevSkim-Action@v1
+
+      - name: Upload DevSkim scan results to GitHub Security tab
+        uses: github/codeql-action/upload-sarif@v3
+        with:
+          sarif_file: devskim-results.sarif

.github/workflows/check_semver.yml

@@ -8,7 +8,7 @@ jobs:
   prepare:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v4
       - uses: actions-rs/toolchain@v1
         with:
           toolchain: nightly-2022-08-03

.github/workflows/ci.yml

@@ -7,17 +7,17 @@ on:
 name: CI
 
 env:
-  RUST_VER: '1.71.0'
+  RUST_VER: 'stable'
   CROSS_VER: '0.2.5'
   CARGO_NET_RETRY: 3
 
 jobs:
   fmt:
     name: Rustfmt
-    runs-on: ubuntu-20.04
+    runs-on: ubuntu-latest
     steps:
       - name: Checkout code
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
 
       - name: Setup Rust
         uses: dtolnay/rust-toolchain@master
@@ -42,32 +42,36 @@ jobs:
           - target: x86_64-linux-android
             target_name: Android
             use_cross: true
-            os: ubuntu-20.04
+            os: ubuntu-latest
 
           - target: x86_64-unknown-freebsd
             target_name: FreeBSD
             use_cross: true
-            os: ubuntu-20.04
+            os: ubuntu-latest
 
           - target: x86_64-unknown-linux-gnu
             target_name: Linux
-            os: ubuntu-20.04
+            os: ubuntu-latest
 
           - target: x86_64-apple-darwin
-            target_name: macOS
-            os: macos-11
+            target_name: macOS-x86_64
+            os: macos-13
+
+          - target: aarch64-apple-darwin
+            target_name: macOS-aarch64
+            os: macos-latest
 
           - target: x86_64-unknown-netbsd
             target_name: NetBSD
             use_cross: true
-            os: ubuntu-20.04
+            os: ubuntu-latest
 
           - target: x86_64-pc-windows-msvc
             target_name: Windows
-            os: windows-2019
+            os: windows-latest
     steps:
       - name: Checkout code
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
 
       - name: Setup Rust
         uses: dtolnay/rust-toolchain@master
@@ -84,8 +88,13 @@ jobs:
         if: matrix.use_cross == true
         run: curl -fL --retry 3 https://github.com/cross-rs/cross/releases/download/v${{ env.CROSS_VER }}/cross-x86_64-unknown-linux-musl.tar.gz | tar vxz -C /usr/local/bin
 
-      - name: Run cargo check
+      - name: Run cargo/cross check
         run: ${{ matrix.use_cross == true && 'cross' || 'cargo' }} check --locked --target ${{ matrix.target }}
 
-      - name: Run cargo clippy
+      - name: Run cargo/cross clippy
         run: ${{ matrix.use_cross == true && 'cross' || 'cargo' }} clippy --locked --target ${{ matrix.target }} --all-features -- -D warnings
+
+      - name: Run cargo test
+        # ONLY run test with cargo
+        if: matrix.use_cross == false
+        run: cargo test --locked --target ${{ matrix.target }} 

.github/workflows/code-coverage.yml

@@ -1,59 +0,0 @@
-on:
-  pull_request:
-  push:
-    branches:
-      - main
-
-env:
-  CARGO_TERM_COLOR: always
-
-name: Test with Code Coverage
-
-jobs:
-  test:
-    name: Test
-    env:
-      PROJECT_NAME_UNDERSCORE: topgrade
-      CARGO_INCREMENTAL: 0
-      RUSTFLAGS: -Zprofile -Ccodegen-units=1 -Copt-level=0 -Clink-dead-code -Coverflow-checks=off -Zpanic_abort_tests -Cpanic=abort
-      RUSTDOCFLAGS: -Cpanic=abort
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/checkout@v2
-      - uses: actions-rs/toolchain@v1
-        with:
-          profile: minimal
-          toolchain: nightly
-          override: true
-      - name: Cache dependencies
-        uses: actions/cache@v2
-        env:
-          cache-name: cache-dependencies
-        with:
-          path: |
-            ~/.cargo/.crates.toml
-            ~/.cargo/.crates2.json
-            ~/.cargo/bin
-            ~/.cargo/registry/index
-            ~/.cargo/registry/cache
-            target
-          key: ${{ runner.os }}-build-${{ env.cache-name }}-${{ hashFiles('Cargo.lock') }}
-      - name: Generate test result and coverage report
-        run: |
-          cargo install cargo2junit grcov;
-          cargo test $CARGO_OPTIONS -- -Z unstable-options --format json | cargo2junit > results.xml;
-          zip -0 ccov.zip `find . \( -name "$PROJECT_NAME_UNDERSCORE*.gc*" \) -print`;
-          grcov ccov.zip -s . -t lcov --llvm --ignore-not-existing --ignore "/*" --ignore "tests/*" -o lcov.info;
-      - name: Upload test results
-        uses: EnricoMi/publish-unit-test-result-action@v1
-        with:
-          check_name: Test Results
-          github_token: ${{ secrets.GITHUB_TOKEN }}
-          files: results.xml
-      - name: Upload to CodeCov
-        uses: codecov/codecov-action@v1
-        with:
-          # required for private repositories:
-          # token: ${{ secrets.CODECOV_TOKEN }}
-          files: ./lcov.info
-          fail_ci_if_error: true

.github/workflows/create_release_assets.yml

@@ -13,40 +13,31 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        platform: [ ubuntu-latest, macos-latest, windows-latest ]
+        platform: [ ubuntu-latest, macos-latest, macos-13, windows-latest ]
     runs-on: ${{ matrix.platform }}
     steps:
-      - uses: actions/checkout@v2
-      - uses: actions-rs/toolchain@v1
-        with:
-          toolchain: stable
-          profile: minimal
-          override: true
+      - uses: actions/checkout@v4
+
+      - name: setup Rust
+        uses: dtolnay/rust-toolchain@stable
+        with: 
           components: rustfmt, clippy
-      - uses: actions-rs/cargo@v1.0.1
-        name: Check format
-        with:
-          command: fmt
-          args: --all -- --check
-      - uses: actions-rs/cargo@v1.0.1
-        name: Run clippy
-        with:
-          command: clippy
-          args: --all-targets --locked -- -D warnings
-      - uses: actions-rs/cargo@v1.0.1
-        name: Run clippy (All features)
-        with:
-          command: clippy
-          args: --all-targets --locked --all-features -- -D warnings
-      - uses: actions-rs/cargo@v1.0.1
-        name: Run tests
-        with:
-          command: test
-      - uses: actions-rs/cargo@v1.0.1
-        name: Build
-        with:
-          command: build
-          args: --release --all-features
+
+      - name: Check format
+        run: cargo fmt --all -- --check
+
+      - name: Run clippy
+        run: cargo clippy --all-targets --locked -- -D warnings
+
+      - name: Run clippy (All features)
+        run: cargo clippy --all-targets --locked --all-features -- -D warnings
+
+      - name: Run tests
+        run: cargo test
+
+      - name: Build in Release profile with all features enabled
+        run: cargo build --release --all-features
+
       - name: Rename Release (Unix)
         run: |
           cargo install default-target
@@ -59,6 +50,7 @@ jobs:
           ls .
         if: ${{ matrix.platform != 'windows-latest' }}
         shell: bash
+
       - name: Rename Release (Windows)
         run: |
           cargo install default-target
@@ -71,7 +63,8 @@ jobs:
           ls .
         if: ${{ matrix.platform == 'windows-latest' }}
         shell: bash
+
       - name: Release
-        uses: softprops/action-gh-release@v1
+        uses: softprops/action-gh-release@v2
         with:
           files: assets/*

.github/workflows/create_release_assets_cross.yml

@@ -0,0 +1,68 @@
+name: Publish release files for non-cd-native environments
+
+on:
+  # workflow_run:
+  #   workflows: ["Check SemVer compliance"]
+  #   types:
+  #     - completed
+  release:
+    types: [ created ]
+
+jobs:
+  build:
+    strategy:
+      fail-fast: false
+      matrix:
+        target: [ 
+          "aarch64-unknown-linux-gnu", 
+          "armv7-unknown-linux-gnueabihf", 
+          "x86_64-unknown-linux-musl", 
+          "aarch64-unknown-linux-musl", 
+          "x86_64-unknown-freebsd",  
+        ]
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+
+      - name: setup Rust
+        uses: dtolnay/rust-toolchain@stable
+        with: 
+          components: rustfmt, clippy
+
+      - name: install targets
+        run: rustup target add ${{ matrix.target }}
+
+      - name: install cross
+        uses: taiki-e/install-action@v2
+        with:
+          tool: cross@0.2.5
+
+      - name: Check format
+        run: cross fmt --all -- --check
+
+      - name: Run clippy
+        run: cross clippy --all-targets --locked --target ${{matrix.target}} -- -D warnings
+
+      - name: Run clippy (All features)
+        run: cross clippy  --locked --all-features --target ${{matrix.target}} -- -D warnings
+
+      - name: Run tests
+        run: cross test --target ${{matrix.target}}
+
+      - name: Build in Release profile with all features enabled
+        run: cross build --release --all-features --target ${{matrix.target}}
+
+      - name: Rename Release
+        run: |
+          mkdir assets
+          FILENAME=topgrade-${{github.event.release.tag_name}}-${{matrix.target}}
+          mv target/${{matrix.target}}/release/topgrade assets
+          cd assets
+          tar --format=ustar -czf $FILENAME.tar.gz topgrade
+          rm topgrade
+          ls .
+
+      - name: Release
+        uses: softprops/action-gh-release@v2
+        with:
+          files: assets/*

.github/workflows/release-cross.yml

@@ -1,70 +0,0 @@
-name: Publish release files for non-cd-native environments
-
-on:
-  # workflow_run:
-  #   workflows: ["Check SemVer compliance"]
-  #   types:
-  #     - completed
-  release:
-    types: [ created ]
-
-jobs:
-  build:
-    strategy:
-      fail-fast: false
-      matrix:
-        target: [ "aarch64-unknown-linux-gnu", "armv7-unknown-linux-gnueabihf", "x86_64-unknown-linux-musl", "aarch64-unknown-linux-musl", "x86_64-unknown-freebsd",  ]
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/checkout@v2
-      - uses: actions-rs/toolchain@v1
-        with:
-          toolchain: stable
-          profile: minimal
-          default: true
-          override: true
-          target: ${{ matrix.target }}
-          components: rustfmt, clippy
-      - uses: actions-rs/cargo@v1.0.1
-        name: Check format
-        with:
-          use-cross: true
-          command: fmt
-          args: --all -- --check
-      - uses: actions-rs/cargo@v1.0.1
-        name: Run clippy
-        with:
-          command: clippy
-          use-cross: true
-          args: --all-targets --locked --target ${{matrix.target}} -- -D warnings
-      - uses: actions-rs/cargo@v1.0.1
-        name: Run clippy (All features)
-        with:
-          command: clippy
-          use-cross: true
-          args:  --locked --all-features --target ${{matrix.target}} -- -D warnings
-      - uses: actions-rs/cargo@v1.0.1
-        name: Run tests
-        with:
-          command: test
-          use-cross: true
-          args: --target ${{matrix.target}}
-      - uses: actions-rs/cargo@v1.0.1
-        name: Build
-        with:
-          command: build
-          use-cross: true
-          args: --release --all-features --target ${{matrix.target}}
-      - name: Rename Release
-        run: |
-          mkdir assets
-          FILENAME=topgrade-${{github.event.release.tag_name}}-${{matrix.target}}
-          mv target/${{matrix.target}}/release/topgrade assets
-          cd assets
-          tar --format=ustar -czf $FILENAME.tar.gz topgrade
-          rm topgrade
-          ls .
-      - name: Release
-        uses: softprops/action-gh-release@v1
-        with:
-          files: assets/*

.github/workflows/release_to_crates_io.yml

@@ -12,7 +12,7 @@ jobs:
   prepare:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v4
       - uses: actions-rs/toolchain@v1
         with:
           toolchain: stable
@@ -21,7 +21,7 @@ jobs:
   publish:
     runs-on: ubuntu-latest
     steps:
-      - uses: katyo/publish-crates@v1
+      - uses: katyo/publish-crates@v2
         with:
           dry-run: true
           check-repo: ${{ github.event_name == 'push' }}

.github/workflows/release_to_homebrew.yml

@@ -19,7 +19,7 @@ jobs:
       uses: Homebrew/actions/setup-homebrew@master
     - name: Cache Homebrew Bundler RubyGems
       id: cache
-      uses: actions/cache@v1
+      uses: actions/cache@v4
       with:
         path: ${{ steps.set-up-homebrew.outputs.gems-path }}
         key: ${{ runner.os }}-rubygems-${{ steps.set-up-homebrew.outputs.gems-hash }}
@@ -29,7 +29,8 @@ jobs:
       if: steps.cache.outputs.cache-hit != 'true'
       run: brew install-bundler-gems
     - name: Bump formulae
-      uses: Homebrew/actions/bump-formulae@master
+      uses: Homebrew/actions/bump-packages@master
+      continue-on-error: true
       with:
         # Custom GitHub access token with only the 'public_repo' scope enabled
         token: ${{secrets.HOMEBREW_ACCESS_TOKEN}}

.github/workflows/release_to_pypi.yml

@@ -14,7 +14,7 @@ jobs:
       matrix:
         target: [x86_64, x86, aarch64]
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
       - name: Build wheels
         uses: PyO3/maturin-action@v1
         with:
@@ -23,7 +23,7 @@ jobs:
           sccache: 'true'
           manylinux: auto
       - name: Upload wheels
-        uses: actions/upload-artifact@v3
+        uses: actions/upload-artifact@v4
         with:
           name: wheels
           path: dist
@@ -34,7 +34,7 @@ jobs:
       matrix:
         target: [x64, x86]
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
       - name: Build wheels
         uses: PyO3/maturin-action@v1
         with:
@@ -42,7 +42,7 @@ jobs:
           args: --release --out dist
           sccache: 'true'
       - name: Upload wheels
-        uses: actions/upload-artifact@v3
+        uses: actions/upload-artifact@v4
         with:
           name: wheels
           path: dist
@@ -53,7 +53,7 @@ jobs:
       matrix:
         target: [x86_64, aarch64]
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
       - name: Build wheels
         uses: PyO3/maturin-action@v1
         with:
@@ -61,7 +61,7 @@ jobs:
           args: --release --out dist
           sccache: 'true'
       - name: Upload wheels
-        uses: actions/upload-artifact@v3
+        uses: actions/upload-artifact@v4
         with:
           name: wheels
           path: dist
@@ -69,14 +69,14 @@ jobs:
   sdist:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
       - name: Build sdist
         uses: PyO3/maturin-action@v1
         with:
           command: sdist
           args: --out dist
       - name: Upload sdist
-        uses: actions/upload-artifact@v3
+        uses: actions/upload-artifact@v4
         with:
           name: wheels
           path: dist
@@ -87,7 +87,7 @@ jobs:
     if: "startsWith(github.ref, 'refs/tags/')"
     needs: [linux, windows, macos, sdist]
     steps:
-      - uses: actions/download-artifact@v3
+      - uses: actions/download-artifact@v4
         with:
           name: wheels
       - name: Publish to PyPI

.github/workflows/release_to_winget.yml

@@ -0,0 +1,13 @@
+name: Publish to WinGet
+on:
+  release:
+    types: [released]
+jobs:
+  publish:
+    runs-on: windows-latest
+    steps:
+      - uses: vedantmgoyal2009/winget-releaser@v2
+        with:
+          identifier: topgrade-rs.topgrade
+          max-versions-to-keep: 5 # keep only latest 5 versions
+          token: ${{ secrets.WINGET_TOKEN }}

.gitignore

@@ -1,4 +1,20 @@
+# JetBrains IDEs
+.idea/
 
-/target
+# Visual Studio
+.vs/
+
+# Visual Studio Code
+.vscode/
+
+# Generic build outputs
 /build
+
+# Specific for some languages like Rust
+/target
+
+# LLVM profiling output
+*.profraw
+
+# Backup files for any .rs files in the project
 **/*.rs.bk

.vscode/launch.json

@@ -1,38 +0,0 @@
-{
-    // Use IntelliSense to learn about possible attributes.
-    // Hover to view descriptions of existing attributes.
-    // For more information, visit: https://go.microsoft.com/fwlink/?linkid=830387
-    "version": "0.2.0",
-    "configurations": [
-        {
-            "type": "lldb",
-            "request": "launch",
-            "name": "Topgrade",
-            "console": "integratedTerminal",
-            "cargo": {
-                "args": [
-                    "build",
-                    "--bin=topgrade-rs",
-                    "--package=topgrade-rs"
-                ],
-                "filter": {
-                    "name": "topgrade-rs",
-                    "kind": "bin"
-                }
-            },
-            "args": [
-                "--only",
-                "${input:step}",
-                "-v"
-            ],
-            "cwd": "${workspaceFolder}"
-        },
-    ],
-    "inputs": [
-        {
-            "type": "promptString",
-            "id": "step",
-            "description": "step name",
-        }
-    ]
-}

.vscode/tasks.json

@@ -1,14 +0,0 @@
-{
-	"version": "2.0.0",
-	"tasks": [
-		{
-			"type": "cargo",
-			"command": "clippy",
-			"problemMatcher": [
-				"$rustc"
-			],
-			"group": "test",
-			"label": "rust: cargo clippy"
-		}
-	]
-}

.vscode/topgrade.code-snippets

@@ -1,50 +0,0 @@
-{
-	// Place your topgrade workspace snippets here. Each snippet is defined under a snippet name and has a scope, prefix, body and 
-	// description. Add comma separated ids of the languages where the snippet is applicable in the scope field. If scope 
-	// is left empty or omitted, the snippet gets applied to all languages. The prefix is what is 
-	// used to trigger the snippet and the body will be expanded and inserted. Possible variables are: 
-	// $1, $2 for tab stops, $0 for the final cursor position, and ${1:label}, ${2:another} for placeholders. 
-	// Placeholders with the same ids are connected.
-	// Example:
-	// "Print to console": {
-	// 	"scope": "javascript,typescript",
-	// 	"prefix": "log",
-	// 	"body": [
-	// 		"console.log('$1');",
-	// 		"$2"
-	// 	],
-	// 	"description": "Log output to console"
-	// }
-	"Skip Step": {
-		"scope": "rust",
-		"prefix": "skipstep",
-		"body": [
-			"return Err(SkipStep(format!(\"$1\")).into());"
-		]
-	},
-	"Step": {
-		"scope": "rust",
-		"prefix": "step",
-		"body": [
-			"pub fn $1(ctx: &ExecutionContext) -> Result<()> {",
-			"    $0",
-			"    Ok(())",
-			"}"
-		]
-	},
-	"Require Binary": {
-		"scope": "rust",
-		"prefix": "req",
-		"description": "Require a binary to be installed",
-		"body": [
-			"let ${1:binary} = require(\"${1:binary}\")?;"
-		]
-	},
-	"macos": {
-		"scope": "rust",
-		"prefix": "macos",
-		"body": [
-			"#[cfg(target_os = \"macos\")]"
-		]
-	}
-}

BREAKINGCHANGES.md

@@ -0,0 +1,9 @@
+# Git: Pull Repos
+
+1. The output of "Pulling <repository path>" has been moved behind the
+   --verbose flag / [misc] configuration block.
+
+# Configuration
+
+1. The `enable_winget` configuration entry in the `windows` section has been
+   removed because it will not cause any issues and will be enabled by default.

CONTRIBUTING.md

@@ -1,6 +1,6 @@
 ## Contributing to `topgrade`
 
-Thank you for your interest in contributing to `topgrade`! 
+Thank you for your interest in contributing to `topgrade`!
 We welcome and encourage contributions of all kinds, such as:
 
 1. Issue reports or feature requests
@@ -13,9 +13,9 @@ for commit messages.
 ## Adding a new `step`
 
 In `topgrade`'s term, package manager is called `step`.
-To add a new `step` to `topgrade`: 
+To add a new `step` to `topgrade`:
 
-1. Add a new variant to 
+1. Add a new variant to
    [`enum Step`](https://github.com/topgrade-rs/topgrade/blob/cb7adc8ced8a77addf2cb051d18bba9f202ab866/src/config.rs#L100)
 
    ```rust
@@ -55,9 +55,9 @@ To add a new `step` to `topgrade`:
    ```
 
    Such a update function would be conventionally named `run_xxx()`, where `xxx`
-   is the name of the new step, and it should take a argument of type 
+   is the name of the new step, and it should take a argument of type
    `&ExecutionContext`, this is adequate for most cases unless some extra stuff is
-   needed (You can find some examples where extra arguments are needed 
+   needed (You can find some examples where extra arguments are needed
    [here](https://github.com/topgrade-rs/topgrade/blob/7e48c5dedcfd5d0124bb9f39079a03e27ed23886/src/main.rs#L201-L219)).
 
    Update function would usually do 3 things:
@@ -90,8 +90,8 @@ To add a new `step` to `topgrade`:
 
 ## Modification to the configuration entries
 
-If your PR has the configuration options 
-(in [`src/config.rs`](https://github.com/topgrade-rs/topgrade/blob/master/src/config.rs)) 
+If your PR has the configuration options
+(in [`src/config.rs`](https://github.com/topgrade-rs/topgrade/blob/master/src/config.rs))
 modified:
 
 1. Adding new options
@@ -101,6 +101,21 @@ Be sure to apply your changes to
 [`config.example.toml`](https://github.com/topgrade-rs/topgrade/blob/master/config.example.toml),
 and have some basic documentations guiding user how to use these options.
 
+## Breaking changes
+
+If your PR introduces a breaking change, document it in [`BREAKINGCHANGES_dev.md`][bc_dev],
+it should be written in Markdown and wrapped at 80, for example:
+
+```md
+1. The configuration location has been updated to x.
+
+2. The step x has been removed.
+
+3. ...
+```
+
+[bc_dev]: https://github.com/topgrade-rs/topgrade/blob/main/BREAKINGCHANGES_dev.md
+
 ## Before you submit your PR
 
 Make sure your patch passes the following tests on your host:
@@ -133,5 +148,5 @@ Don't worry about other platforms, we have most of them covered in our CI.
    ```
 
    If `xxx` respects locale, then the above code should work on English system,
-   on a system that does not use English, e.g., it uses Chinese, that `"help"` may be 
+   on a system that does not use English, e.g., it uses Chinese, that `"help"` may be
    translated to `"帮助"`, and the above code won't work.

Cargo.toml

@@ -5,9 +5,9 @@ categories = ["os"]
 keywords = ["upgrade", "update"]
 license = "GPL-3.0"
 repository = "https://github.com/topgrade-rs/topgrade"
-version = "12.0.2"
+version = "15.0.0"
 authors = ["Roey Darwish Dror <roey.ghost@gmail.com>", "Thomas Schönauer <t.schoenauer@hgs-wt.at>"]
-exclude = ["doc/screenshot.gif"]
+exclude = ["doc/screenshot.gif", "BREAKINGCHANGES_dev.md"]
 edition = "2021"
 
 readme = "README.md"
@@ -22,26 +22,26 @@ path = "src/main.rs"
 [dependencies]
 home = "~0.5"
 etcetera = "~0.8"
-once_cell = "~1.17"
+once_cell = "~1.19"
 serde = { version = "~1.0", features = ["derive"] }
-toml = "0.5"
-which_crate = { version = "~4.1", package = "which" }
-shellexpand = "~2.1"
-clap = { version = "~3.1", features = ["cargo", "derive"] }
-clap_complete = "~3.1"
-clap_mangen = "~0.1"
-walkdir = "~2.3"
+toml = "0.8"
+which_crate = { version = "~6.0", package = "which" }
+shellexpand = "~3.1"
+clap = { version = "~4.5", features = ["cargo", "derive"] }
+clap_complete = "~4.5"
+clap_mangen = "~0.2"
+walkdir = "~2.5"
 console = "~0.15"
 lazy_static = "~1.4"
 chrono = "~0.4"
 glob = "~0.3"
-strum = { version = "~0.24", features = ["derive"] }
+strum = { version = "~0.26", features = ["derive"] }
 thiserror = "~1.0"
-tempfile = "~3.6"
+tempfile = "~3.10"
 cfg-if = "~1.0"
-tokio = { version = "~1.18", features = ["process", "rt-multi-thread"] }
+tokio = { version = "~1.38", features = ["process", "rt-multi-thread"] }
 futures = "~0.3"
-regex = "~1.7"
+regex = "~1.10"
 semver = "~1.0"
 shell-words = "~1.1"
 color-eyre = "~0.6"
@@ -49,10 +49,11 @@ tracing = { version = "~0.1", features = ["attributes", "log"] }
 tracing-subscriber = { version = "~0.3", features = ["env-filter", "time"] }
 merge = "~0.1"
 regex-split = "~0.1"
-notify-rust = "~4.8"
+notify-rust = "~4.11"
+wildmatch = "2.3.0"
 
 [package.metadata.generate-rpm]
-assets = [{source = "target/release/topgrade", dest="/usr/bin/topgrade"}]
+assets = [{ source = "target/release/topgrade", dest = "/usr/bin/topgrade" }]
 
 [package.metadata.generate-rpm.requires]
 git = "*"
@@ -61,13 +62,12 @@ git = "*"
 depends = "$auto,git"
 
 [target.'cfg(unix)'.dependencies]
-libc = "~0.2"
-nix = "~0.24"
-rust-ini = "~0.19"
-self_update_crate = { version = "~0.30", default-features = false, optional = true, package = "self_update", features = ["archive-tar", "compression-flate2", "rustls"] }
+nix = { version = "~0.29", features = ["hostname", "signal", "user"] }
+rust-ini = "~0.21"
+self_update_crate = { version = "~0.40", default-features = false, optional = true, package = "self_update", features = ["archive-tar", "compression-flate2", "rustls"] }
 
 [target.'cfg(windows)'.dependencies]
-self_update_crate = { version = "~0.30", default-features = false, optional = true, package = "self_update", features = ["archive-zip", "compression-zip-deflate", "rustls"] }
+self_update_crate = { version = "~0.40", default-features = false, optional = true, package = "self_update", features = ["archive-zip", "compression-zip-deflate", "rustls"] }
 winapi = "~0.3"
 parselnk = "~0.1"
 

README.md

@@ -8,13 +8,9 @@
   <a href="https://aur.archlinux.org/packages/topgrade"><img alt="AUR" src="https://img.shields.io/aur/version/topgrade.svg"></a>
   <a href="https://formulae.brew.sh/formula/topgrade"><img alt="Homebrew" src="https://img.shields.io/homebrew/v/topgrade.svg"></a>
 
-  <img alt="Demo" src="doc/screenshot.gif" width="550px">
+  <img alt="Demo" src="doc/topgrade_demo.gif">
 </div>
 
-## Maintainers Wanted
-
-I currently have not enough time to maintain this project on the level required and which the project deserves. For this reason I'm asking the community to help supporting the project, to help and work on resolving issues and create new features. Thanks for all your help.
-
 
 ## Introduction
 
@@ -33,9 +29,12 @@ To remedy this, **Topgrade** detects which tools you use and runs the appropriat
 - NixOS: [Nixpkgs](https://search.nixos.org/packages?show=topgrade)
 - Void Linux: [XBPS](https://voidlinux.org/packages/?arch=x86_64&q=topgrade)
 - macOS: [Homebrew](https://formulae.brew.sh/formula/topgrade) or [MacPorts](https://ports.macports.org/port/topgrade/)
-- Windows: [Scoop](https://github.com/ScoopInstaller/Main/blob/master/bucket/topgrade.json)
+- Windows: [Scoop][scoop] or [Winget][winget]
 - PyPi: [pip](https://pypi.org/project/topgrade/)
 
+[scoop]: https://scoop.sh/#/apps?q=topgrade
+[winget]: https://winstall.app/apps/topgrade-rs.topgrade
+
 Other systems users can either use `cargo install` or the compiled binaries from the release page.
 The compiled binaries contain a self-upgrading feature.
 
@@ -46,15 +45,18 @@ The compiled binaries contain a self-upgrading feature.
 
 Just run `topgrade`.
 
-Visit the documentation at [topgrade-rs.github.io](https://topgrade-rs.github.io/) for more information.
-
-> **Warning**
-> Work in Progress
-
 ## Configuration 
 
 See `config.example.toml` for an example configuration file.
 
+## Migration and Breaking Changes
+
+Whenever there is a **breaking change**, the major version number will be bumped,
+and we will document these changes in the release note, please take a look at 
+it when updated to a major release.
+
+> Got a question? Feel free to open an issue or discussion!
+
 ### Configuration Path
 
 #### `CONFIG_DIR` on each platform

RELEASE_PROCEDURE.md

@@ -0,0 +1,65 @@
+> This document lists the steps that lead to a successful release of Topgrade.
+
+1. Open a PR that:
+   
+   > Here is an [Example PR](https://github.com/topgrade-rs/topgrade/pull/652) 
+   > that you can refer to.
+
+   1. bumps the version number.
+
+      > If there are breaking changes, the major version number should be increased.
+
+   2. Overwrite [`BREAKINGCHANGES`][breaking_changes] with 
+      [`BREAKINGCHANGES_dev`][breaking_changes_dev], and create a new dev file:
+
+      ```sh'
+      $ cd topgrade
+      $ cp BREAKINGCHANGES_dev.md BREAKINGCHANGES.md
+      $ touch BREAKINGCHANGES_dev.md
+      ```
+
+      [breaking_changes_dev]: https://github.com/topgrade-rs/topgrade/blob/main/BREAKINGCHANGES_dev.md
+      [breaking_changes]: https://github.com/topgrade-rs/topgrade/blob/main/BREAKINGCHANGES.md
+
+2. Check and merge that PR.
+
+3. Go to the [release](https://github.com/topgrade-rs/topgrade/releases) page 
+   and click the [Draft a new release button](https://github.com/topgrade-rs/topgrade/releases/new)
+
+4. Write the release notes
+
+   We usually use GitHub's [Automatically generated release notes][auto_gen_release_notes]
+   functionality to generate release notes, but you write your own one instead.
+
+   [auto_gen_release_notes]: https://docs.github.com/en/repositories/releasing-projects-on-github/automatically-generated-release-notes
+
+5. Attaching binaries
+
+   You don't need to do this as our CI will automatically do it for you, 
+   binaries for Linux, macOS and Windows will be created and attached.
+
+   And the CI will publish the new binary to:
+
+   1. AUR
+   2. PyPi
+   3. Homebrew (seems that this is not working correctly)
+   4. Winget
+
+6. Manually release it to Crates.io
+   
+   > Yeah, this is unfortunate, our CI won't do this for us. We should probably add one.
+
+   1. `cd` to the Topgrade directory, make sure that it is the latest version 
+      (i.e., including the PR that bumps the version number).
+   2. Set up your token with `cargo login`.
+   3. Dry-run the publish `cargo publish --dry-run`.
+   4. If step 3 works, then do the final release `cargo publish`.
+
+   > You can also take a look at the official tutorial [Publishing on crates.io][doc]
+   >
+   > [doc]: https://doc.rust-lang.org/cargo/reference/publishing.html
+
+
+
+
+

config.example.toml

@@ -2,168 +2,252 @@
 # [include] sections are processed in the order you write them
 # Files in $CONFIG_DIR/topgrade.d/ are automatically included before this file
 [include]
-#paths = ["/etc/topgrade.toml"]
+# paths = ["/etc/topgrade.toml"]
+
 
 [misc]
-# Don't ask for confirmations
-#assume_yes = true
-
-# Disable specific steps - same options as the command line flag
-#disable = ["system", "emacs"]
-
-# Ignore failures for these steps
-#ignore_failures = ["powershell"]
-
-# Run specific steps - same options as the command line flag
-#only = ["system", "emacs"]
-
-# Do not ask to retry failed steps (default: false)
-#no_retry = true
-
-# Sudo command to be used
-#sudo_command = "sudo"
-
 # Run `sudo -v` to cache credentials at the start of the run
 # This avoids a blocking password prompt in the middle of an unattended run
-#pre_sudo = false
+# (default: false)
+# pre_sudo = false
 
-# Run inside tmux
-#run_in_tmux = true
+# Sudo command to be used
+# sudo_command = "sudo"
+
+# Disable specific steps - same options as the command line flag
+# disable = ["system", "emacs"]
+
+# Ignore failures for these steps
+# ignore_failures = ["powershell"]
 
 # List of remote machines with Topgrade installed on them
-#remote_topgrades = ["toothless", "pi", "parnas"]
-
-# Arguments to pass to SSH when upgrading remote systems
-#ssh_arguments = "-o ConnectTimeout=2"
+# remote_topgrades = ["toothless", "pi", "parnas"]
 
 # Path to Topgrade executable on remote machines
-#remote_topgrade_path = ".cargo/bin/topgrade"
+# remote_topgrade_path = ".cargo/bin/topgrade"
+
+# Arguments to pass to SSH when upgrading remote systems
+# ssh_arguments = "-o ConnectTimeout=2"
 
 # Arguments to pass tmux when pulling Repositories
-#tmux_arguments = "-S /var/tmux.sock"
+# tmux_arguments = "-S /var/tmux.sock"
 
-# Do not set the terminal title
-#set_title = false
+# Do not set the terminal title (default: true)
+# set_title = true
 
-# Display the time in step titles
+# Display the time in step titles (default: true)
 # display_time = true
 
-# Cleanup temporary or old files
-#cleanup = true
+# Don't ask for confirmations (no default value)
+# assume_yes = true
 
-# Skip sending a notification at the end of a run
-#skip_notify = true
+# Do not ask to retry failed steps (default: false)
+# no_retry = true
 
-# Whether to self update (this is ignored if the binary has been built without self update support, available also via setting the environment variable TOPGRADE_NO_SELF_UPGRADE)
-#no_self_update = true
+# Run inside tmux (default: false)
+# run_in_tmux = true
+
+# Cleanup temporary or old files (default: false)
+# cleanup = true
+
+# Send a notification for every step (default: false)
+# notify_each_step = false
+
+# Skip sending a notification at the end of a run (default: false)
+# skip_notify = true
+
+# The Bash-it branch to update (default: "stable")
+# bashit_branch = "stable"
+
+# Run specific steps - same options as the command line flag
+# only = ["system", "emacs"]
+
+# Whether to self update
+#
+# this will be ignored if the binary is built without self update support
+#
+# available also via setting the environment variable TOPGRADE_NO_SELF_UPGRADE)
+# no_self_update = true
+
+# Extra tracing filter directives
+# These are prepended to the `--log-filter` argument
+# See: https://docs.rs/tracing-subscriber/latest/tracing_subscriber/filter/struct.EnvFilter.html#directives
+# log_filters = ["topgrade::command=debug", "warn"]
 
-# Extra Home Manager arguments
-#home_manager_arguments = ["--flake", "file"]
 
 # Commands to run before anything
 [pre_commands]
-#"Emacs Snapshot" = "rm -rf ~/.emacs.d/elpa.bak && cp -rl ~/.emacs.d/elpa ~/.emacs.d/elpa.bak"
+# "Emacs Snapshot" = "rm -rf ~/.emacs.d/elpa.bak && cp -rl ~/.emacs.d/elpa ~/.emacs.d/elpa.bak"
+
 
 # Commands to run after anything
 [post_commands]
-#"Emacs Snapshot" = "rm -rf ~/.emacs.d/elpa.bak && cp -rl ~/.emacs.d/elpa ~/.emacs.d/elpa.bak"
+# "Emacs Snapshot" = "rm -rf ~/.emacs.d/elpa.bak && cp -rl ~/.emacs.d/elpa ~/.emacs.d/elpa.bak"
+
 
 # Custom commands
 [commands]
-#"Python Environment" = "~/dev/.env/bin/pip install -i https://pypi.python.org/simple -U --upgrade-strategy eager jupyter"
-#"Custom command using interactive shell (unix)" = "-i vim_upgrade"
+# "Python Environment" = "~/dev/.env/bin/pip install -i https://pypi.python.org/simple -U --upgrade-strategy eager jupyter"
+# "Custom command using interactive shell (unix)" = "-i vim_upgrade"
+
 
 [python]
-#enable_pip_review = true                         ###disabled by default
-#enable_pip_review_local = true                   ###disabled by default
-#enable_pipupgrade = true                         ###disabled by default
-#pipupgrade_arguments = "-y -u --pip-path pip"    ###disabled by default
+# enable_pip_review = true                         ###disabled by default
+# enable_pip_review_local = true                   ###disabled by default
+# enable_pipupgrade = true                         ###disabled by default
+# pipupgrade_arguments = "-y -u --pip-path pip"    ###disabled by default
+
 
 [composer]
-#self_update = true
+# self_update = true
+
 
 [brew]
-#greedy_cask = true
-#autoremove = true
+# For the BrewCask step
+# If `Repo Cask Upgrade` exists, then use the `-a` option.
+# Otherwise, use the `--greedy` option.
+# greedy_cask = true
+
+# For the BrewCask step
+# If `Repo Cask Upgrade` does not exist, then use the `--greedy_latest` option.
+# NOTE: the above entry `greedy_cask` contains this entry, though you can enable
+# both of them, they won't clash with each other.
+# greedy_latest = true
+
+# For the BrewFormula step
+# Execute `brew autoremove` after the step.
+# autoremove = true
+
+# For the BrewFormula step
+# Upgrade formulae built from the HEAD branch; `brew upgrade --fetch-HEAD`
+# fetch_head = true
+
 
 [linux]
-# Arch Package Manager to use. Allowed values: autodetect, aura, garuda_update, pacman, pamac, paru, pikaur, trizen, yay.
-#arch_package_manager = "pacman"
+# Arch Package Manager to use.
+# Allowed values:
+#   autodetect, aura, garuda_update, pacman, pamac, paru, pikaur, trizen, yay
+# arch_package_manager = "pacman"
+
 # Arguments to pass yay (or paru) when updating packages
-#yay_arguments = "--nodevel"
+# yay_arguments = "--nodevel"
+
 # Arguments to pass dnf when updating packages
-#dnf_arguments = "--refresh"
-#aura_aur_arguments = "-kx"
-#aura_pacman_arguments = ""
-#garuda_update_arguments = ""
-#show_arch_news = true
-#trizen_arguments = "--devel"
-#pikaur_arguments = ""
-#pamac_arguments = "--no-devel"
-#enable_tlmgr = true
-#emerge_sync_flags = "-q"
-#emerge_update_flags = "-uDNa --with-bdeps=y world"
-#redhat_distro_sync = false
-#suse_dup = false
-#rpm_ostree = false
-#nix_arguments = "--flake"
+# dnf_arguments = "--refresh"
+
+# aura_aur_arguments = "-kx"
+
+# aura_pacman_arguments = ""
+# garuda_update_arguments = ""
+
+# show_arch_news = true
+
+# trizen_arguments = "--devel"
+
+# pikaur_arguments = ""
+
+# pamac_arguments = "--no-devel"
+
+# enable_tlmgr = true
+
+# emerge_sync_flags = "-q"
+
+# emerge_update_flags = "-uDNa --with-bdeps=y world"
+
+# redhat_distro_sync = false
+
+# suse_dup = false
+
+# rpm_ostree = false
+
+# nix_arguments = "--flake"
+
+# nix_env_arguments = "--prebuilt-only"
+
+# Extra Home Manager arguments
+# home_manager_arguments = ["--flake", "file"]
+
 
 [git]
-#max_concurrency = 5
+# How many repos to pull at max in parallel
+# max_concurrency = 5
+
 # Additional git repositories to pull
-#repos = [
-#    "~/src/*/",
-#    "~/.config/something"
-#]
+# repos = [
+#     "~/src/*/",
+#     "~/.config/something"
+# ]
 
 # Don't pull the predefined git repos
-#pull_predefined = false
+# pull_predefined = false
 
 # Arguments to pass Git when pulling Repositories
-#arguments = "--rebase --autostash"
+# arguments = "--rebase --autostash"
+
 
 [windows]
 # Manually select Windows updates
-#accept_all_updates = false
-#open_remotes_in_new_terminal = true
-#wsl_update_pre_release = true
-#wsl_update_use_web_download = true
+# accept_all_updates = false
+
+# open_remotes_in_new_terminal = true
+
+# wsl_update_pre_release = true
+
+# wsl_update_use_web_download = true
 
 # Causes Topgrade to rename itself during the run to allow package managers
 # to upgrade it. Use this only if you installed Topgrade by using a package
 # manager such as Scoop or Cargo
-#self_rename = true
+# self_rename = true
+
 
 [npm]
 # Use sudo if the NPM directory isn't owned by the current user
-#use_sudo = true
+# use_sudo = true
+
 
 [yarn]
 # Run `yarn global upgrade` with `sudo`
-#use_sudo = true
+# use_sudo = true
+
 
 [vim]
 # For `vim-plug`, execute `PlugUpdate!` instead of `PlugUpdate`
-#force_plug_update = true
+# force_plug_update = true
+
 
 [firmware]
 # Offer to update firmware; if false just check for and display available updates
-#upgrade = true
+# upgrade = true
+
 
 [vagrant]
 # Vagrant directories
-#directories = []
+# directories = []
 
 # power on vagrant boxes if needed
-#power_on = true
+# power_on = true
 
 # Always suspend vagrant boxes instead of powering off
-#always_suspend = true
+# always_suspend = true
+
 
 [flatpak]
 # Use sudo for updating the system-wide installation
-#use_sudo = true
+# use_sudo = true
+
 
 [distrobox]
-#use_root = false
-#containers = ["archlinux-latest"]
+# use_root = false
+
+# containers = ["archlinux-latest"]
+[containers]
+# Specify the containers to ignore while updating (Wildcard supported)
+# ignored_containers = ["ghcr.io/rancher-sandbox/rancher-desktop/rdx-proxy:latest", "docker.io*"]
+
+[lensfun]
+# If disabled, Topgrade invokes `lensfun‑update‑data` without root priviledge, 
+# then the update will be only available to you. Otherwise, `sudo` is required,
+# and the update will be installed system-wide, i.e., available to all users.
+# (default: false)
+# use_sudo = false

src/breaking_changes.rs

@@ -0,0 +1,167 @@
+//! Inform the users of the breaking changes introduced in this major release.
+//!
+//! Print the breaking changes and possibly a migration guide when:
+//!     1. The Topgrade being executed is a new major release
+//!     2. This is the first launch of that major release
+
+use crate::terminal::print_separator;
+#[cfg(windows)]
+use crate::WINDOWS_DIRS;
+#[cfg(unix)]
+use crate::XDG_DIRS;
+use color_eyre::eyre::Result;
+use etcetera::base_strategy::BaseStrategy;
+use std::{
+    env::var,
+    fs::{read_to_string, OpenOptions},
+    io::Write,
+    path::PathBuf,
+    str::FromStr,
+};
+
+/// Version string x.y.z
+static VERSION_STR: &str = env!("CARGO_PKG_VERSION");
+
+/// Version info
+#[derive(Debug)]
+pub(crate) struct Version {
+    _major: u64,
+    minor: u64,
+    patch: u64,
+}
+
+impl FromStr for Version {
+    type Err = std::convert::Infallible;
+
+    fn from_str(s: &str) -> Result<Self, Self::Err> {
+        const NOT_SEMVER: &str = "Topgrade version is not semantic";
+        const NOT_NUMBER: &str = "Topgrade version is not dot-separated numbers";
+
+        let mut iter = s.split('.').take(3);
+        let major = iter.next().expect(NOT_SEMVER).parse().expect(NOT_NUMBER);
+        let minor = iter.next().expect(NOT_SEMVER).parse().expect(NOT_NUMBER);
+        let patch = iter.next().expect(NOT_SEMVER).parse().expect(NOT_NUMBER);
+
+        // They cannot be all 0s
+        assert!(
+            !(major == 0 && minor == 0 && patch == 0),
+            "Version numbers can not be all 0s"
+        );
+
+        Ok(Self {
+            _major: major,
+            minor,
+            patch,
+        })
+    }
+}
+
+impl Version {
+    /// True if this version is a new major release.
+    pub(crate) fn is_new_major_release(&self) -> bool {
+        // We have already checked that they cannot all be zeros, so `self.major`
+        // is guaranteed to be non-zero.
+        self.minor == 0 && self.patch == 0
+    }
+}
+
+/// Topgrade's breaking changes
+///
+/// We store them in the compiled binary.
+pub(crate) static BREAKINGCHANGES: &str = include_str!("../BREAKINGCHANGES.md");
+
+/// Return platform's data directory.
+fn data_dir() -> PathBuf {
+    #[cfg(unix)]
+    return XDG_DIRS.data_dir();
+
+    #[cfg(windows)]
+    return WINDOWS_DIRS.data_dir();
+}
+
+/// Return Topgrade's keep file path.
+///
+/// keep file is a file under the data directory containing a major version
+/// number, it will be created on first run and is used to check if an execution
+/// of Topgrade is the first run of a major release, for more details, see
+/// `first_run_of_major_release()`.
+fn keep_file_path() -> PathBuf {
+    let keep_file = "topgrade_keep";
+    data_dir().join(keep_file)
+}
+
+/// If environment variable `TOPGRADE_SKIP_BRKC_NOTIFY` is set to `true`, then
+/// we won't notify the user of the breaking changes.
+pub(crate) fn should_skip() -> bool {
+    if let Ok(var) = var("TOPGRADE_SKIP_BRKC_NOTIFY") {
+        return var.as_str() == "true";
+    }
+
+    false
+}
+
+/// True if this is the first execution of a major release.
+pub(crate) fn first_run_of_major_release() -> Result<bool> {
+    let version = VERSION_STR.parse::<Version>().expect("should be a valid version");
+    let keep_file = keep_file_path();
+
+    // disable this lint here as the current code has better readability
+    #[allow(clippy::collapsible_if)]
+    if version.is_new_major_release() {
+        if !keep_file.exists() || read_to_string(&keep_file)? != VERSION_STR {
+            return Ok(true);
+        }
+    }
+
+    Ok(false)
+}
+
+/// Print breaking changes to the user.
+pub(crate) fn print_breaking_changes() {
+    let header = format!("Topgrade {VERSION_STR} Breaking Changes");
+    print_separator(header);
+    let contents = if BREAKINGCHANGES.is_empty() {
+        "No Breaking changes"
+    } else {
+        BREAKINGCHANGES
+    };
+    println!("{contents}\n");
+}
+
+/// This function will be ONLY executed when the user has confirmed the breaking
+/// changes, once confirmed, we write the keep file, which means the first run
+/// of this major release is finished.
+pub(crate) fn write_keep_file() -> Result<()> {
+    std::fs::create_dir_all(data_dir())?;
+    let keep_file = keep_file_path();
+
+    let mut file = OpenOptions::new()
+        .create(true)
+        .write(true)
+        .truncate(true)
+        .open(keep_file)?;
+    let _ = file.write(VERSION_STR.as_bytes())?;
+
+    Ok(())
+}
+
+#[cfg(test)]
+mod test {
+    use super::*;
+
+    #[test]
+    fn is_new_major_release_works() {
+        let first_major_release: Version = "1.0.0".parse().unwrap();
+        let under_dev: Version = "0.1.0".parse().unwrap();
+
+        assert!(first_major_release.is_new_major_release());
+        assert!(!under_dev.is_new_major_release());
+    }
+
+    #[test]
+    #[should_panic(expected = "Version numbers can not be all 0s")]
+    fn invalid_version() {
+        let all_0 = "0.0.0";
+        all_0.parse::<Version>().unwrap();
+    }
+}

src/command.rs

@@ -10,6 +10,8 @@ use color_eyre::eyre::Context;
 
 use crate::error::TopgradeError;
 
+use tracing::debug;
+
 /// Like [`Output`], but UTF-8 decoded.
 #[derive(Clone, Debug, PartialEq, Eq)]
 pub struct Utf8Output {
@@ -183,7 +185,7 @@ impl CommandExt for Command {
             let err = TopgradeError::ProcessFailedWithOutput(program, output.status, stderr.into_owned());
 
             let ret = Err(err).with_context(|| message);
-            tracing::debug!("Command failed: {ret:?}");
+            debug!("Command failed: {ret:?}");
             ret
         }
     }
@@ -203,7 +205,7 @@ impl CommandExt for Command {
             let (program, _) = get_program_and_args(self);
             let err = TopgradeError::ProcessFailed(program, status);
             let ret = Err(err).with_context(|| format!("Command failed: `{command}`"));
-            tracing::debug!("Command failed: {ret:?}");
+            debug!("Command failed: {ret:?}");
             ret
         }
     }
@@ -239,6 +241,6 @@ fn format_program_and_args(cmd: &Command) -> String {
 
 fn log(cmd: &Command) -> String {
     let command = format_program_and_args(cmd);
-    tracing::debug!("Executing command `{command}`");
+    debug!("Executing command `{command}`");
     command
 }

src/config.rs

@@ -7,7 +7,7 @@ use std::path::{Path, PathBuf};
 use std::process::Command;
 use std::{env, fs};
 
-use clap::{ArgEnum, Parser};
+use clap::{Parser, ValueEnum};
 use clap_complete::Shell;
 use color_eyre::eyre::Context;
 use color_eyre::eyre::Result;
@@ -16,18 +16,20 @@ use merge::Merge;
 use regex::Regex;
 use regex_split::RegexSplit;
 use serde::Deserialize;
-use strum::{EnumIter, EnumString, EnumVariantNames, IntoEnumIterator};
-use tracing::debug;
+use strum::{EnumIter, EnumString, IntoEnumIterator, VariantNames};
 use which_crate::which;
 
+use super::utils::editor;
 use crate::command::CommandExt;
 use crate::sudo::SudoKind;
 use crate::utils::string_prepend_str;
-
-use super::utils::{editor, hostname};
+use tracing::{debug, error};
 
 pub static EXAMPLE_CONFIG: &str = include_str!("../config.example.toml");
 
+/// Topgrade's default log level.
+pub const DEFAULT_LOG_LEVEL: &str = "warn";
+
 #[allow(unused_macros)]
 macro_rules! str_value {
     ($section:ident, $value:ident) => {
@@ -40,60 +42,9 @@ macro_rules! str_value {
     };
 }
 
-macro_rules! check_deprecated {
-    ($config:expr, $old:ident, $section:ident, $new:ident) => {
-        if $config.$old.is_some() {
-            println!(concat!(
-                "'",
-                stringify!($old),
-                "' configuration option is deprecated. Rename it to '",
-                stringify!($new),
-                "' and put it under the section [",
-                stringify!($section),
-                "]",
-            ));
-        }
-    };
-}
-
-/// Get a deprecated option moved from a section to another
-macro_rules! get_deprecated_moved_opt {
-    ($old_section:expr, $old:ident, $new_section:expr, $new:ident) => {{
-        if let Some(old_section) = &$old_section {
-            if old_section.$old.is_some() {
-                return &old_section.$old;
-            }
-        }
-
-        if let Some(new_section) = &$new_section {
-            return &new_section.$new;
-        }
-
-        return &None;
-    }};
-}
-
-macro_rules! get_deprecated_moved_or_default_to {
-    ($old_section:expr, $old:ident, $new_section:expr, $new:ident, $default_ret:ident) => {{
-        if let Some(old_section) = &$old_section {
-            if let Some(old) = old_section.$old {
-                return old;
-            }
-        }
-
-        if let Some(new_section) = &$new_section {
-            if let Some(new) = new_section.$new {
-                return new;
-            }
-        }
-
-        return $default_ret;
-    }};
-}
-
 pub type Commands = BTreeMap<String, String>;
 
-#[derive(ArgEnum, EnumString, EnumVariantNames, Debug, Clone, PartialEq, Eq, Deserialize, EnumIter, Copy)]
+#[derive(ValueEnum, EnumString, VariantNames, Debug, Clone, PartialEq, Eq, Deserialize, EnumIter, Copy)]
 #[clap(rename_all = "snake_case")]
 #[serde(rename_all = "snake_case")]
 #[strum(serialize_all = "snake_case")]
@@ -102,15 +53,20 @@ pub enum Step {
     AppMan,
     Asdf,
     Atom,
+    Audit,
+    AutoCpufreq,
     Bin,
     Bob,
     BrewCask,
     BrewFormula,
     Bun,
+    BunPackages,
     Cargo,
+    Certbot,
     Chezmoi,
     Chocolatey,
     Choosenim,
+    ClamAvDb,
     Composer,
     Conda,
     ConfigUpdate,
@@ -121,6 +77,7 @@ pub enum Step {
     Distrobox,
     DkpPacman,
     Dotnet,
+    Elan,
     Emacs,
     Firmware,
     Flatpak,
@@ -143,11 +100,15 @@ pub enum Step {
     Kakoune,
     Helix,
     Krew,
+    Lure,
+    Lensfun,
     Macports,
     Mamba,
+    Miktex,
     Mas,
     Maza,
     Micro,
+    Mise,
     Myrepos,
     Nix,
     Node,
@@ -162,9 +123,11 @@ pub enum Step {
     Pipx,
     Pkg,
     Pkgin,
+    PlatformioCore,
     Pnpm,
     Powershell,
     Protonup,
+    Pyenv,
     Raco,
     Rcm,
     Remotes,
@@ -172,8 +135,10 @@ pub enum Step {
     Rtcl,
     RubyGems,
     Rustup,
+    Rye,
     Scoop,
     Sdkman,
+    SelfUpdate,
     Sheldon,
     Shell,
     Snap,
@@ -189,9 +154,12 @@ pub enum Step {
     Vagrant,
     Vcpkg,
     Vim,
+    Vscode,
+    Waydroid,
     Winget,
     Wsl,
     WslUpdate,
+    Xcodes,
     Yadm,
     Yarn,
 }
@@ -203,6 +171,13 @@ pub struct Include {
     paths: Option<Vec<String>>,
 }
 
+#[derive(Deserialize, Default, Debug, Merge)]
+#[serde(deny_unknown_fields)]
+pub struct Containers {
+    #[merge(strategy = crate::utils::merge_strategies::vec_prepend_opt)]
+    ignored_containers: Option<Vec<String>>,
+}
+
 #[derive(Deserialize, Default, Debug, Merge)]
 #[serde(deny_unknown_fields)]
 pub struct Git {
@@ -233,7 +208,6 @@ pub struct Windows {
     accept_all_updates: Option<bool>,
     self_rename: Option<bool>,
     open_remotes_in_new_terminal: Option<bool>,
-    enable_winget: Option<bool>,
     wsl_update_pre_release: Option<bool>,
     wsl_update_use_web_download: Option<bool>,
 }
@@ -289,7 +263,9 @@ pub struct Flatpak {
 #[serde(deny_unknown_fields)]
 pub struct Brew {
     greedy_cask: Option<bool>,
+    greedy_latest: Option<bool>,
     autoremove: Option<bool>,
+    fetch_head: Option<bool>,
 }
 
 #[derive(Debug, Deserialize, Clone, Copy)]
@@ -338,6 +314,9 @@ pub struct Linux {
     #[merge(strategy = crate::utils::merge_strategies::string_append_opt)]
     nix_arguments: Option<String>,
 
+    #[merge(strategy = crate::utils::merge_strategies::string_append_opt)]
+    nix_env_arguments: Option<String>,
+
     #[merge(strategy = crate::utils::merge_strategies::string_append_opt)]
     apt_arguments: Option<String>,
 
@@ -375,11 +354,6 @@ pub struct Misc {
 
     sudo_command: Option<SudoKind>,
 
-    #[merge(strategy = crate::utils::merge_strategies::vec_prepend_opt)]
-    git_repos: Option<Vec<String>>,
-
-    predefined_git_repos: Option<bool>,
-
     #[merge(strategy = crate::utils::merge_strategies::vec_prepend_opt)]
     disable: Option<Vec<Step>>,
 
@@ -394,9 +368,6 @@ pub struct Misc {
     #[merge(strategy = crate::utils::merge_strategies::string_append_opt)]
     ssh_arguments: Option<String>,
 
-    #[merge(strategy = crate::utils::merge_strategies::string_append_opt)]
-    git_arguments: Option<String>,
-
     #[merge(strategy = crate::utils::merge_strategies::string_append_opt)]
     tmux_arguments: Option<String>,
 
@@ -406,15 +377,6 @@ pub struct Misc {
 
     assume_yes: Option<bool>,
 
-    #[merge(strategy = crate::utils::merge_strategies::string_append_opt)]
-    yay_arguments: Option<String>,
-
-    #[merge(strategy = crate::utils::merge_strategies::string_append_opt)]
-    aura_aur_arguments: Option<String>,
-
-    #[merge(strategy = crate::utils::merge_strategies::string_append_opt)]
-    aura_pacman_arguments: Option<String>,
-
     no_retry: Option<bool>,
 
     run_in_tmux: Option<bool>,
@@ -423,8 +385,6 @@ pub struct Misc {
 
     notify_each_step: Option<bool>,
 
-    accept_all_windows_updates: Option<bool>,
-
     skip_notify: Option<bool>,
 
     bashit_branch: Option<String>,
@@ -433,6 +393,14 @@ pub struct Misc {
     only: Option<Vec<Step>>,
 
     no_self_update: Option<bool>,
+
+    log_filters: Option<Vec<String>>,
+}
+
+#[derive(Deserialize, Default, Debug, Merge)]
+#[serde(deny_unknown_fields)]
+pub struct Lensfun {
+    use_sudo: Option<bool>,
 }
 
 #[derive(Deserialize, Default, Debug, Merge)]
@@ -469,6 +437,9 @@ pub struct ConfigFile {
     #[merge(strategy = crate::utils::merge_strategies::inner_merge_opt)]
     git: Option<Git>,
 
+    #[merge(strategy = crate::utils::merge_strategies::inner_merge_opt)]
+    containers: Option<Containers>,
+
     #[merge(strategy = crate::utils::merge_strategies::inner_merge_opt)]
     windows: Option<Windows>,
 
@@ -492,6 +463,9 @@ pub struct ConfigFile {
 
     #[merge(strategy = crate::utils::merge_strategies::inner_merge_opt)]
     distrobox: Option<Distrobox>,
+
+    #[merge(strategy = crate::utils::merge_strategies::inner_merge_opt)]
+    lensfun: Option<Lensfun>,
 }
 
 fn config_directory() -> PathBuf {
@@ -517,7 +491,7 @@ impl ConfigFile {
 
         let config_directory = config_directory();
 
-        let possible_config_paths = vec![
+        let possible_config_paths = [
             config_directory.join("topgrade.toml"),
             config_directory.join("topgrade/topgrade.toml"),
         ];
@@ -526,7 +500,7 @@ impl ConfigFile {
         for path in possible_config_paths.iter() {
             if path.exists() {
                 debug!("Configuration at {}", path.display());
-                res.0 = path.clone();
+                res.0.clone_from(path);
                 break;
             }
         }
@@ -535,7 +509,7 @@ impl ConfigFile {
 
         // If no config file exists, create a default one in the config directory
         if !res.0.exists() && res.1.is_empty() {
-            res.0 = possible_config_paths[0].clone();
+            res.0.clone_from(&possible_config_paths[0]);
             debug!("No configuration exists");
             write(&res.0, EXAMPLE_CONFIG).map_err(|e| {
                 debug!(
@@ -592,11 +566,11 @@ impl ConfigFile {
             */
             for include in dir_include {
                 let include_contents = fs::read_to_string(&include).map_err(|e| {
-                    tracing::error!("Unable to read {}", include.display());
+                    error!("Unable to read {}", include.display());
                     e
                 })?;
                 let include_contents_parsed = toml::from_str(include_contents.as_str()).map_err(|e| {
-                    tracing::error!("Failed to deserialize {}", include.display());
+                    error!("Failed to deserialize {}", include.display());
                     e
                 })?;
 
@@ -613,7 +587,7 @@ impl ConfigFile {
         }
 
         let mut contents_non_split = fs::read_to_string(&config_path).map_err(|e| {
-            tracing::error!("Unable to read {}", config_path.display());
+            error!("Unable to read {}", config_path.display());
             e
         })?;
 
@@ -626,7 +600,7 @@ impl ConfigFile {
 
         for contents in contents_split {
             let config_file_include_only: ConfigFileIncludeOnly = toml::from_str(contents).map_err(|e| {
-                tracing::error!("Failed to deserialize an include section of {}", config_path.display());
+                error!("Failed to deserialize an include section of {}", config_path.display());
                 e
             })?;
 
@@ -639,38 +613,24 @@ impl ConfigFile {
                         let include_contents = match fs::read_to_string(&include_path) {
                             Ok(c) => c,
                             Err(e) => {
-                                tracing::error!("Unable to read {}: {}", include_path.display(), e);
+                                error!("Unable to read {}: {}", include_path.display(), e);
                                 continue;
                             }
                         };
                         match toml::from_str::<Self>(&include_contents) {
                             Ok(include_parsed) => result.merge(include_parsed),
                             Err(e) => {
-                                tracing::error!("Failed to deserialize {}: {}", include_path.display(), e);
+                                error!("Failed to deserialize {}: {}", include_path.display(), e);
                                 continue;
                             }
                         };
-
-                        debug!("Configuration include found: {}", include_path.display());
                     }
-                } else {
-                    debug!("No include paths found in {}", config_path.display());
                 }
             }
 
             match toml::from_str::<Self>(contents) {
                 Ok(contents) => result.merge(contents),
-                Err(e) => tracing::error!("Failed to deserialize {}: {}", config_path.display(), e),
-            }
-        }
-
-        if let Some(misc) = &mut result.misc {
-            if let Some(ref mut paths) = &mut misc.git_repos {
-                for path in paths.iter_mut() {
-                    let expanded = shellexpand::tilde::<&str>(&path.as_ref()).into_owned();
-                    debug!("Path {} expanded to {}", path, expanded);
-                    *path = expanded;
-                }
+                Err(e) => error!("Failed to deserialize {}: {}", config_path.display(), e),
             }
         }
 
@@ -683,7 +643,6 @@ impl ConfigFile {
         }
 
         debug!("Loaded configuration: {:?}", result);
-
         Ok(result)
     }
 
@@ -744,19 +703,19 @@ pub struct CommandLineArgs {
     no_retry: bool,
 
     /// Do not perform upgrades for the given steps
-    #[clap(long = "disable", value_name = "STEP", arg_enum, multiple_values = true)]
+    #[clap(long = "disable", value_name = "STEP", value_enum, num_args = 1..)]
     disable: Vec<Step>,
 
     /// Perform only the specified steps (experimental)
-    #[clap(long = "only", value_name = "STEP", arg_enum, multiple_values = true)]
+    #[clap(long = "only", value_name = "STEP", value_enum, num_args = 1..)]
     only: Vec<Step>,
 
     /// Run only specific custom commands
-    #[clap(long = "custom-commands", value_name = "NAME", multiple_values = true)]
+    #[clap(long = "custom-commands", value_name = "NAME", num_args = 1..)]
     custom_commands: Vec<String>,
 
     /// Set environment variables
-    #[clap(long = "env", value_name = "NAME=VALUE", multiple_values = true)]
+    #[clap(long = "env", value_name = "NAME=VALUE", num_args = 1..)]
     env: Vec<String>,
 
     /// Output debug logs. Alias for `--log-filter debug`.
@@ -776,9 +735,8 @@ pub struct CommandLineArgs {
         short = 'y',
         long = "yes",
         value_name = "STEP",
-        arg_enum,
-        multiple_values = true,
-        min_values = 0
+        value_enum,
+        num_args = 0..,
     )]
     yes: Option<Vec<Step>>,
 
@@ -801,11 +759,11 @@ pub struct CommandLineArgs {
     /// Tracing filter directives.
     ///
     /// See: https://docs.rs/tracing-subscriber/latest/tracing_subscriber/struct.EnvFilter.html
-    #[clap(long, default_value = "warn")]
+    #[clap(long, default_value = DEFAULT_LOG_LEVEL)]
     pub log_filter: String,
 
     /// Print completion script for the given shell and exit
-    #[clap(long, arg_enum, hide = true)]
+    #[clap(long, value_enum, hide = true)]
     pub gen_completion: Option<Shell>,
 
     /// Print roff manpage and exit
@@ -830,12 +788,25 @@ impl CommandLineArgs {
         &self.env
     }
 
+    /// In Topgrade, filter directives come from 3 places:
+    ///     1. CLI option `--log-filter`
+    ///     2. Config file
+    ///     3. `debug` if the `--verbose` option is present
+    ///
+    /// Before loading the configuration file, we need our logger to work, so this
+    /// function will return directives coming from part 1 and 2.
+    ///
+    ///
+    /// When the configuration file is loaded, `Config::tracing_filter_directives()`
+    /// will return all the 3 parts.
     pub fn tracing_filter_directives(&self) -> String {
+        let mut ret = self.log_filter.clone();
         if self.verbose {
-            "debug".into()
-        } else {
-            self.log_filter.clone()
+            ret.push(',');
+            ret.push_str("debug");
         }
+
+        ret
     }
 }
 
@@ -844,6 +815,7 @@ impl CommandLineArgs {
 /// The struct holds the loaded configuration file, as well as the arguments parsed from the command line.
 /// Its provided methods decide the appropriate options based on combining the configuration file and the
 /// command line arguments.
+#[derive(Debug)]
 pub struct Config {
     opt: CommandLineArgs,
     config_file: ConfigFile,
@@ -860,7 +832,7 @@ impl Config {
             ConfigFile::read(opt.config.clone()).unwrap_or_else(|e| {
                 // Inform the user about errors when loading the configuration,
                 // but fallback to the default config to at least attempt to do something
-                tracing::error!("failed to load configuration: {}", e);
+                error!("failed to load configuration: {}", e);
                 ConfigFile::default()
             })
         } else {
@@ -868,14 +840,6 @@ impl Config {
             ConfigFile::default()
         };
 
-        if let Some(misc) = &config_file.misc {
-            check_deprecated!(misc, git_arguments, git, arguments);
-            check_deprecated!(misc, git_repos, git, repos);
-            check_deprecated!(misc, predefined_git_repos, git, pull_predefined);
-            check_deprecated!(misc, yay_arguments, linux, yay_arguments);
-            check_deprecated!(misc, accept_all_windows_updates, windows, accept_all_updates);
-        }
-
         let allowed_steps = Self::allowed_steps(&opt, &config_file);
 
         Ok(Self {
@@ -906,8 +870,16 @@ impl Config {
     }
 
     /// The list of additional git repositories to pull.
-    pub fn git_repos(&self) -> &Option<Vec<String>> {
-        get_deprecated_moved_opt!(&self.config_file.misc, git_repos, &self.config_file.git, repos)
+    pub fn git_repos(&self) -> Option<&Vec<String>> {
+        self.config_file.git.as_ref().and_then(|git| git.repos.as_ref())
+    }
+
+    /// The list of docker/podman containers to ignore.
+    pub fn containers_ignored_tags(&self) -> Option<&Vec<String>> {
+        self.config_file
+            .containers
+            .as_ref()
+            .and_then(|containers| containers.ignored_containers.as_ref())
     }
 
     /// Tell whether the specified step should run.
@@ -1019,8 +991,8 @@ impl Config {
     }
 
     /// Extra Git arguments
-    pub fn git_arguments(&self) -> &Option<String> {
-        get_deprecated_moved_opt!(&self.config_file.misc, git_arguments, &self.config_file.git, arguments)
+    pub fn git_arguments(&self) -> Option<&String> {
+        self.config_file.git.as_ref().and_then(|git| git.arguments.as_ref())
     }
 
     /// Extra Tmux arguments
@@ -1093,13 +1065,11 @@ impl Config {
 
     /// Whether to accept all Windows updates
     pub fn accept_all_windows_updates(&self) -> bool {
-        get_deprecated_moved_or_default_to!(
-            &self.config_file.misc,
-            accept_all_windows_updates,
-            &self.config_file.windows,
-            accept_all_updates,
-            true
-        )
+        self.config_file
+            .windows
+            .as_ref()
+            .and_then(|windows| windows.accept_all_updates)
+            .unwrap_or(true)
     }
 
     /// Whether to self rename the Topgrade executable during the run
@@ -1138,6 +1108,15 @@ impl Config {
             .unwrap_or(false)
     }
 
+    /// Whether Brew cask should be greedy_latest
+    pub fn brew_greedy_latest(&self) -> bool {
+        self.config_file
+            .brew
+            .as_ref()
+            .and_then(|c| c.greedy_latest)
+            .unwrap_or(false)
+    }
+
     /// Whether Brew should autoremove
     pub fn brew_autoremove(&self) -> bool {
         self.config_file
@@ -1147,6 +1126,15 @@ impl Config {
             .unwrap_or(false)
     }
 
+    /// Whether Brew should upgrade formulae built from the HEAD branch
+    pub fn brew_fetch_head(&self) -> bool {
+        self.config_file
+            .brew
+            .as_ref()
+            .and_then(|c| c.fetch_head)
+            .unwrap_or(false)
+    }
+
     /// Whether Composer should update itself
     pub fn composer_self_update(&self) -> bool {
         self.config_file
@@ -1278,6 +1266,14 @@ impl Config {
             .and_then(|linux| linux.nix_arguments.as_deref())
     }
 
+    /// Extra nix-env arguments
+    pub fn nix_env_arguments(&self) -> Option<&str> {
+        self.config_file
+            .linux
+            .as_ref()
+            .and_then(|linux| linux.nix_env_arguments.as_deref())
+    }
+
     /// Extra Home Manager arguments
     pub fn home_manager(&self) -> Option<&Vec<String>> {
         self.config_file
@@ -1374,19 +1370,39 @@ impl Config {
 
     pub fn use_predefined_git_repos(&self) -> bool {
         !self.opt.disable_predefined_git_repos
-            && get_deprecated_moved_or_default_to!(
-                &self.config_file.misc,
-                predefined_git_repos,
-                &self.config_file.git,
-                pull_predefined,
-                true
-            )
+            && self
+                .config_file
+                .git
+                .as_ref()
+                .and_then(|git| git.pull_predefined)
+                .unwrap_or(true)
     }
 
     pub fn verbose(&self) -> bool {
         self.opt.verbose
     }
 
+    /// After loading the config file, filter directives consist of 3 parts:
+    ///
+    ///     1. directives from the configuration file
+    ///     2. directives from the CLI options `--log-filter`
+    ///     3. `debug`, which would be enabled if the `--verbose` option is present
+    ///
+    /// Previous directive will be overwritten if a directive with the same target
+    /// appear later.
+    pub fn tracing_filter_directives(&self) -> String {
+        let mut ret = String::new();
+        if let Some(directives) = self.config_file.misc.as_ref().and_then(|m| m.log_filters.as_ref()) {
+            ret.push_str(&directives.join(","));
+        }
+        ret.push(',');
+        ret.push_str(&self.opt.log_filter);
+        if self.verbose() {
+            ret.push_str(",debug");
+        }
+        ret
+    }
+
     pub fn show_skipped(&self) -> bool {
         self.opt.show_skipped
     }
@@ -1454,30 +1470,22 @@ impl Config {
     #[cfg(target_os = "linux")]
     str_value!(linux, emerge_update_flags);
 
-    pub fn should_execute_remote(&self, remote: &str) -> bool {
-        if let Ok(hostname) = hostname() {
-            if remote == hostname {
+    pub fn should_execute_remote(&self, hostname: Result<String>, remote: &str) -> bool {
+        let remote_host = remote.split_once('@').map_or(remote, |(_, host)| host);
+
+        if let Ok(hostname) = hostname {
+            if remote_host == hostname {
                 return false;
             }
         }
 
-        if let Some(limit) = self.opt.remote_host_limit.as_ref() {
-            return limit.is_match(remote);
+        if let Some(limit) = &self.opt.remote_host_limit.as_ref() {
+            return limit.is_match(remote_host);
         }
 
         true
     }
 
-    #[cfg(windows)]
-    pub fn enable_winget(&self) -> bool {
-        return self
-            .config_file
-            .windows
-            .as_ref()
-            .and_then(|w| w.enable_winget)
-            .unwrap_or(false);
-    }
-
     pub fn enable_pipupgrade(&self) -> bool {
         return self
             .config_file
@@ -1525,11 +1533,21 @@ impl Config {
 
         self.opt.custom_commands.iter().any(|s| s == name)
     }
+
+    pub fn lensfun_use_sudo(&self) -> bool {
+        self.config_file
+            .lensfun
+            .as_ref()
+            .and_then(|lensfun| lensfun.use_sudo)
+            .unwrap_or(false)
+    }
 }
 
 #[cfg(test)]
 mod test {
-    use crate::config::ConfigFile;
+
+    use crate::config::*;
+    use color_eyre::eyre::eyre;
 
     /// Test the default configuration in `config.example.toml` is valid.
     #[test]
@@ -1538,4 +1556,51 @@ mod test {
 
         assert!(toml::from_str::<ConfigFile>(str).is_ok());
     }
+
+    fn config() -> Config {
+        Config {
+            opt: CommandLineArgs::parse_from::<_, String>([]),
+            config_file: ConfigFile::default(),
+            allowed_steps: Vec::new(),
+        }
+    }
+
+    #[test]
+    fn test_should_execute_remote_different_hostname() {
+        assert!(config().should_execute_remote(Ok("hostname".to_string()), "remote_hostname"))
+    }
+
+    #[test]
+    fn test_should_execute_remote_different_hostname_with_user() {
+        assert!(config().should_execute_remote(Ok("hostname".to_string()), "user@remote_hostname"))
+    }
+
+    #[test]
+    fn test_should_execute_remote_unknown_hostname() {
+        assert!(config().should_execute_remote(Err(eyre!("failed to get hostname")), "remote_hostname"))
+    }
+
+    #[test]
+    fn test_should_not_execute_remote_same_hostname() {
+        assert!(!config().should_execute_remote(Ok("hostname".to_string()), "hostname"))
+    }
+
+    #[test]
+    fn test_should_not_execute_remote_same_hostname_with_user() {
+        assert!(!config().should_execute_remote(Ok("hostname".to_string()), "user@hostname"))
+    }
+
+    #[test]
+    fn test_should_execute_remote_matching_limit() {
+        let mut config = config();
+        config.opt = CommandLineArgs::parse_from(["topgrade", "--remote-host-limit", "remote_hostname"]);
+        assert!(config.should_execute_remote(Ok("hostname".to_string()), "user@remote_hostname"))
+    }
+
+    #[test]
+    fn test_should_not_execute_remote_not_matching_limit() {
+        let mut config = config();
+        config.opt = CommandLineArgs::parse_from(["topgrade", "--remote-host-limit", "other_hostname"]);
+        assert!(!config.should_execute_remote(Ok("hostname".to_string()), "user@remote_hostname"))
+    }
 }

src/ctrlc/unix.rs

@@ -1,6 +1,6 @@
 //! SIGINT handling in Unix systems.
 use crate::ctrlc::interrupted::set_interrupted;
-use nix::sys::signal;
+use nix::sys::signal::{sigaction, SaFlags, SigAction, SigHandler, SigSet, Signal};
 
 /// Handle SIGINT. Set the interruption flag.
 extern "C" fn handle_sigint(_: i32) {
@@ -10,12 +10,8 @@ extern "C" fn handle_sigint(_: i32) {
 /// Set the necessary signal handlers.
 /// The function panics on failure.
 pub fn set_handler() {
-    let sig_action = signal::SigAction::new(
-        signal::SigHandler::Handler(handle_sigint),
-        signal::SaFlags::empty(),
-        signal::SigSet::empty(),
-    );
+    let sig_action = SigAction::new(SigHandler::Handler(handle_sigint), SaFlags::empty(), SigSet::empty());
     unsafe {
-        signal::sigaction(signal::SIGINT, &sig_action).unwrap();
+        sigaction(Signal::SIGINT, &sig_action).unwrap();
     }
 }

src/ctrlc/windows.rs

@@ -1,5 +1,6 @@
 //! A stub for Ctrl + C handling.
 use crate::ctrlc::interrupted::set_interrupted;
+use tracing::error;
 use winapi::shared::minwindef::{BOOL, DWORD, FALSE, TRUE};
 use winapi::um::consoleapi::SetConsoleCtrlHandler;
 use winapi::um::wincon::CTRL_C_EVENT;
@@ -16,6 +17,6 @@ extern "system" fn handler(ctrl_type: DWORD) -> BOOL {
 
 pub fn set_handler() {
     if 0 == unsafe { SetConsoleCtrlHandler(Some(handler), TRUE) } {
-        tracing::error!("Cannot set a control C handler")
+        error!("Cannot set a control C handler")
     }
 }

src/execution_context.rs

@@ -1,6 +1,5 @@
 #![allow(dead_code)]
 use crate::executor::RunType;
-use crate::git::Git;
 use crate::sudo::Sudo;
 use crate::utils::{require_option, REQUIRE_SUDO};
 use crate::{config::Config, executor::Executor};
@@ -12,7 +11,6 @@ use std::sync::Mutex;
 pub struct ExecutionContext<'a> {
     run_type: RunType,
     sudo: Option<Sudo>,
-    git: &'a Git,
     config: &'a Config,
     /// Name of a tmux session to execute commands in, if any.
     /// This is used in `./steps/remote/ssh.rs`, where we want to run `topgrade` in a new
@@ -23,12 +21,11 @@ pub struct ExecutionContext<'a> {
 }
 
 impl<'a> ExecutionContext<'a> {
-    pub fn new(run_type: RunType, sudo: Option<Sudo>, git: &'a Git, config: &'a Config) -> Self {
+    pub fn new(run_type: RunType, sudo: Option<Sudo>, config: &'a Config) -> Self {
         let under_ssh = var("SSH_CLIENT").is_ok() || var("SSH_TTY").is_ok();
         Self {
             run_type,
             sudo,
-            git,
             config,
             tmux_session: Mutex::new(None),
             under_ssh,
@@ -44,10 +41,6 @@ impl<'a> ExecutionContext<'a> {
         self.run_type
     }
 
-    pub fn git(&self) -> &Git {
-        self.git
-    }
-
     pub fn sudo(&self) -> &Option<Sudo> {
         &self.sudo
     }

src/executor.rs

@@ -227,6 +227,7 @@ impl DryCommand {
 
 /// The Result of spawn. Contains an actual `std::process::Child` if executed by a wet command.
 pub enum ExecutorChild {
+    #[allow(unused)] // this type has not been used
     Wet(Child),
     Dry,
 }

src/main.rs

@@ -6,14 +6,17 @@ use std::path::PathBuf;
 use std::process::exit;
 use std::time::Duration;
 
+use crate::breaking_changes::{first_run_of_major_release, print_breaking_changes, should_skip, write_keep_file};
 use clap::CommandFactory;
 use clap::{crate_version, Parser};
 use color_eyre::eyre::Context;
 use color_eyre::eyre::Result;
 use console::Key;
+use etcetera::base_strategy::BaseStrategy;
 #[cfg(windows)]
 use etcetera::base_strategy::Windows;
-use etcetera::base_strategy::{BaseStrategy, Xdg};
+#[cfg(unix)]
+use etcetera::base_strategy::Xdg;
 use once_cell::sync::Lazy;
 use tracing::debug;
 
@@ -24,6 +27,9 @@ use self::error::Upgraded;
 use self::steps::{remote::*, *};
 use self::terminal::*;
 
+use self::utils::{hostname, install_color_eyre, install_tracing, update_tracing};
+
+mod breaking_changes;
 mod command;
 mod config;
 mod ctrlc;
@@ -41,16 +47,30 @@ mod sudo;
 mod terminal;
 mod utils;
 
-pub static HOME_DIR: Lazy<PathBuf> = Lazy::new(|| home::home_dir().expect("No home directory"));
-pub static XDG_DIRS: Lazy<Xdg> = Lazy::new(|| Xdg::new().expect("No home directory"));
+pub(crate) static HOME_DIR: Lazy<PathBuf> = Lazy::new(|| home::home_dir().expect("No home directory"));
+#[cfg(unix)]
+pub(crate) static XDG_DIRS: Lazy<Xdg> = Lazy::new(|| Xdg::new().expect("No home directory"));
+
 #[cfg(windows)]
-pub static WINDOWS_DIRS: Lazy<Windows> = Lazy::new(|| Windows::new().expect("No home directory"));
+pub(crate) static WINDOWS_DIRS: Lazy<Windows> = Lazy::new(|| Windows::new().expect("No home directory"));
 
 fn run() -> Result<()> {
-    color_eyre::install()?;
+    install_color_eyre()?;
     ctrlc::set_handler();
 
     let opt = CommandLineArgs::parse();
+    // Set up the logger with the filter directives from:
+    //     1. CLI option `--log-filter`
+    //     2. `debug` if the `--verbose` option is present
+    // We do this because we need our logger to work while loading the
+    // configuration file.
+    //
+    // When the configuration file is loaded, update the logger with the full
+    // filter directives.
+    //
+    // For more info, see the comments in `CommandLineArgs::tracing_filter_directives()`
+    // and `Config::tracing_filter_directives()`.
+    let reload_handle = install_tracing(&opt.tracing_filter_directives())?;
 
     if let Some(shell) = opt.gen_completion {
         let cmd = &mut CommandLineArgs::command();
@@ -64,8 +84,6 @@ fn run() -> Result<()> {
         return Ok(());
     }
 
-    install_tracing(&opt.tracing_filter_directives())?;
-
     for env in opt.env_variables() {
         let mut splitted = env.split('=');
         let var = splitted.next().unwrap();
@@ -84,6 +102,8 @@ fn run() -> Result<()> {
     }
 
     let config = Config::load(opt)?;
+    // Update the logger with the full filter directives.
+    update_tracing(&reload_handle, &config.tracing_filter_directives())?;
     set_title(config.set_title());
     display_time(config.display_time());
     set_desktop_notifications(config.notify_each_step());
@@ -92,7 +112,8 @@ fn run() -> Result<()> {
     debug!("OS: {}", env!("TARGET"));
     debug!("{:?}", std::env::args());
     debug!("Binary path: {:?}", std::env::current_exe());
-    debug!("Self Update: {:?}", cfg!(feature = "self-update"));
+    debug!("self-update Feature Enabled: {:?}", cfg!(feature = "self-update"));
+    debug!("Configuration: {:?}", config);
 
     if config.run_in_tmux() && env::var("TOPGRADE_INSIDE_TMUX").is_err() {
         #[cfg(unix)]
@@ -102,8 +123,6 @@ fn run() -> Result<()> {
         }
     }
 
-    let git = git::Git::new();
-    let mut git_repos = git::Repositories::new(&git);
     let powershell = powershell::Powershell::new();
     let should_run_powershell = powershell.profile().is_some() && config.should_run(Step::Powershell);
     let emacs = emacs::Emacs::new();
@@ -112,25 +131,34 @@ fn run() -> Result<()> {
 
     let sudo = config.sudo_command().map_or_else(sudo::Sudo::detect, sudo::Sudo::new);
     let run_type = executor::RunType::new(config.dry_run());
-    let ctx = execution_context::ExecutionContext::new(run_type, sudo, &git, &config);
+    let ctx = execution_context::ExecutionContext::new(run_type, sudo, &config);
     let mut runner = runner::Runner::new(&ctx);
 
+    // If
+    //
+    // 1. the breaking changes notification shouldnot be skipped
+    // 2. this is the first execution of a major release
+    //
+    // inform user of breaking changes
+    if !should_skip() && first_run_of_major_release()? {
+        print_breaking_changes();
+
+        if prompt_yesno("Confirmed?")? {
+            write_keep_file()?;
+        } else {
+            exit(1);
+        }
+    }
+
+    // Self-Update step, this will execute only if:
+    // 1. the `self-update` feature is enabled
+    // 2. it is not disabled from configuration (env var/CLI opt/file)
     #[cfg(feature = "self-update")]
     {
-        let config_self_upgrade = env::var("TOPGRADE_NO_SELF_UPGRADE").is_err() && !config.no_self_update();
+        let should_self_update = env::var("TOPGRADE_NO_SELF_UPGRADE").is_err() && !config.no_self_update();
 
-        if !run_type.dry() && config_self_upgrade {
-            let result = self_update::self_update();
-
-            if let Err(e) = &result {
-                #[cfg(windows)]
-                {
-                    if e.downcast_ref::<Upgraded>().is_some() {
-                        return result;
-                    }
-                }
-                print_warning(format!("Self update error: {e}"));
-            }
+        if should_self_update {
+            runner.execute(Step::SelfUpdate, "Self Update", || self_update::self_update(&ctx))?;
         }
     }
 
@@ -154,7 +182,7 @@ fn run() -> Result<()> {
     }
 
     if let Some(topgrades) = config.remote_topgrades() {
-        for remote_topgrade in topgrades.iter().filter(|t| config.should_execute_remote(t)) {
+        for remote_topgrade in topgrades.iter().filter(|t| config.should_execute_remote(hostname(), t)) {
             runner.execute(Step::Remotes, format!("Remote ({remote_topgrade})"), || {
                 ssh::ssh_step(&ctx, remote_topgrade)
             })?;
@@ -187,15 +215,10 @@ fn run() -> Result<()> {
         }
         runner.execute(Step::ConfigUpdate, "config-update", || linux::run_config_update(&ctx))?;
 
-        runner.execute(Step::BrewFormula, "Brew", || {
-            unix::run_brew_formula(&ctx, unix::BrewVariant::Path)
-        })?;
-
         runner.execute(Step::AM, "am", || linux::run_am(&ctx))?;
         runner.execute(Step::AppMan, "appman", || linux::run_appman(&ctx))?;
         runner.execute(Step::DebGet, "deb-get", || linux::run_deb_get(&ctx))?;
         runner.execute(Step::Toolbx, "toolbx", || toolbx::run_toolbx(&ctx))?;
-        runner.execute(Step::Flatpak, "Flatpak", || linux::run_flatpak(&ctx))?;
         runner.execute(Step::Snap, "snap", || linux::run_snap(&ctx))?;
         runner.execute(Step::Pacstall, "pacstall", || linux::run_pacstall(&ctx))?;
         runner.execute(Step::Pacdef, "pacdef", || linux::run_pacdef(&ctx))?;
@@ -205,6 +228,14 @@ fn run() -> Result<()> {
         runner.execute(Step::System, "pihole", || linux::run_pihole_update(&ctx))?;
         runner.execute(Step::Firmware, "Firmware upgrades", || linux::run_fwupdmgr(&ctx))?;
         runner.execute(Step::Restarts, "Restarts", || linux::run_needrestart(&ctx))?;
+
+        runner.execute(Step::Flatpak, "Flatpak", || linux::run_flatpak(&ctx))?;
+        runner.execute(Step::BrewFormula, "Brew", || {
+            unix::run_brew_formula(&ctx, unix::BrewVariant::Path)
+        })?;
+        runner.execute(Step::Lure, "LURE", || linux::run_lure_update(&ctx))?;
+        runner.execute(Step::Waydroid, "Waydroid", || linux::run_waydroid(&ctx))?;
+        runner.execute(Step::AutoCpufreq, "auto-cpufreq", || linux::run_auto_cpufreq(&ctx))?;
     }
 
     #[cfg(target_os = "macos")]
@@ -228,6 +259,7 @@ fn run() -> Result<()> {
             unix::run_brew_cask(&ctx, unix::BrewVariant::Path)
         })?;
         runner.execute(Step::Macports, "MacPorts", || macos::run_macports(&ctx))?;
+        runner.execute(Step::Xcodes, "Xcodes", || macos::update_xcodes(&ctx))?;
         runner.execute(Step::Sparkle, "Sparkle", || macos::run_sparkle(&ctx))?;
         runner.execute(Step::Mas, "App Store", || macos::run_mas(&ctx))?;
         runner.execute(Step::System, "System upgrade", || macos::upgrade_macos(&ctx))?;
@@ -238,14 +270,14 @@ fn run() -> Result<()> {
         runner.execute(Step::Pkg, "DragonFly BSD Packages", || {
             dragonfly::upgrade_packages(&ctx)
         })?;
-        dragonfly::audit_packages(&ctx)?;
+        runner.execute(Step::Audit, "DragonFly Audit", || dragonfly::audit_packages(&ctx))?;
     }
 
     #[cfg(target_os = "freebsd")]
     {
         runner.execute(Step::Pkg, "FreeBSD Packages", || freebsd::upgrade_packages(&ctx))?;
         runner.execute(Step::System, "FreeBSD Upgrade", || freebsd::upgrade_freebsd(&ctx))?;
-        freebsd::audit_packages(&ctx)?;
+        runner.execute(Step::Audit, "FreeBSD Audit", || freebsd::audit_packages(&ctx))?;
     }
 
     #[cfg(target_os = "openbsd")]
@@ -263,11 +295,14 @@ fn run() -> Result<()> {
     {
         runner.execute(Step::Yadm, "yadm", || unix::run_yadm(&ctx))?;
         runner.execute(Step::Nix, "nix", || unix::run_nix(&ctx))?;
+        runner.execute(Step::Nix, "nix upgrade-nix", || unix::run_nix_self_upgrade(&ctx))?;
         runner.execute(Step::Guix, "guix", || unix::run_guix(&ctx))?;
         runner.execute(Step::HomeManager, "home-manager", || unix::run_home_manager(&ctx))?;
         runner.execute(Step::Asdf, "asdf", || unix::run_asdf(&ctx))?;
+        runner.execute(Step::Mise, "mise", || unix::run_mise(&ctx))?;
         runner.execute(Step::Pkgin, "pkgin", || unix::run_pkgin(&ctx))?;
         runner.execute(Step::Bun, "bun", || unix::run_bun(&ctx))?;
+        runner.execute(Step::BunPackages, "bun-packages", || unix::run_bun_packages(&ctx))?;
         runner.execute(Step::Shell, "zr", || zsh::run_zr(&ctx))?;
         runner.execute(Step::Shell, "antibody", || zsh::run_antibody(&ctx))?;
         runner.execute(Step::Shell, "antidote", || zsh::run_antidote(&ctx))?;
@@ -291,6 +326,7 @@ fn run() -> Result<()> {
         runner.execute(Step::GnomeShellExtensions, "Gnome Shell Extensions", || {
             unix::upgrade_gnome_extensions(&ctx)
         })?;
+        runner.execute(Step::Pyenv, "pyenv", || unix::run_pyenv(&ctx))?;
         runner.execute(Step::Sdkman, "SDKMAN!", || unix::run_sdkman(&ctx))?;
         runner.execute(Step::Rcm, "rcm", || unix::run_rcm(&ctx))?;
         runner.execute(Step::Maza, "maza", || unix::run_maza(&ctx))?;
@@ -308,6 +344,8 @@ fn run() -> Result<()> {
 
     // The following update function should be executed on all OSes.
     runner.execute(Step::Fossil, "fossil", || generic::run_fossil(&ctx))?;
+    runner.execute(Step::Elan, "elan", || generic::run_elan(&ctx))?;
+    runner.execute(Step::Rye, "rye", || generic::run_rye(&ctx))?;
     runner.execute(Step::Rustup, "rustup", || generic::run_rustup(&ctx))?;
     runner.execute(Step::Juliaup, "juliaup", || generic::run_juliaup(&ctx))?;
     runner.execute(Step::Dotnet, ".NET", || generic::run_dotnet_upgrade(&ctx))?;
@@ -320,8 +358,12 @@ fn run() -> Result<()> {
     runner.execute(Step::Opam, "opam", || generic::run_opam_update(&ctx))?;
     runner.execute(Step::Vcpkg, "vcpkg", || generic::run_vcpkg_update(&ctx))?;
     runner.execute(Step::Pipx, "pipx", || generic::run_pipx_update(&ctx))?;
+    runner.execute(Step::Vscode, "Visual Studio Code extensions", || {
+        generic::run_vscode_extensions_update(&ctx)
+    })?;
     runner.execute(Step::Conda, "conda", || generic::run_conda_update(&ctx))?;
     runner.execute(Step::Mamba, "mamba", || generic::run_mamba_update(&ctx))?;
+    runner.execute(Step::Miktex, "miktex", || generic::run_miktex_packages_update(&ctx))?;
     runner.execute(Step::Pip3, "pip3", || generic::run_pip3_update(&ctx))?;
     runner.execute(Step::PipReview, "pip-review", || generic::run_pip_review_update(&ctx))?;
     runner.execute(Step::PipReviewLocal, "pip-review (local)", || {
@@ -364,67 +406,15 @@ fn run() -> Result<()> {
         generic::run_ghcli_extensions_upgrade(&ctx)
     })?;
     runner.execute(Step::Bob, "Bob", || generic::run_bob(&ctx))?;
-
-    if config.use_predefined_git_repos() {
-        if config.should_run(Step::Emacs) {
-            if !emacs.is_doom() {
-                if let Some(directory) = emacs.directory() {
-                    git_repos.insert_if_repo(directory);
-                }
-            }
-            git_repos.insert_if_repo(HOME_DIR.join(".doom.d"));
-        }
-
-        if config.should_run(Step::Vim) {
-            git_repos.insert_if_repo(HOME_DIR.join(".vim"));
-            git_repos.insert_if_repo(HOME_DIR.join(".config/nvim"));
-        }
-
-        git_repos.insert_if_repo(HOME_DIR.join(".ideavimrc"));
-        git_repos.insert_if_repo(HOME_DIR.join(".intellimacs"));
-
-        if config.should_run(Step::Rcm) {
-            git_repos.insert_if_repo(HOME_DIR.join(".dotfiles"));
-        }
-
-        #[cfg(unix)]
-        {
-            git_repos.insert_if_repo(zsh::zshrc());
-            if config.should_run(Step::Tmux) {
-                git_repos.insert_if_repo(HOME_DIR.join(".tmux"));
-            }
-            git_repos.insert_if_repo(HOME_DIR.join(".config/fish"));
-            git_repos.insert_if_repo(XDG_DIRS.config_dir().join("openbox"));
-            git_repos.insert_if_repo(XDG_DIRS.config_dir().join("bspwm"));
-            git_repos.insert_if_repo(XDG_DIRS.config_dir().join("i3"));
-            git_repos.insert_if_repo(XDG_DIRS.config_dir().join("sway"));
-        }
-
-        #[cfg(windows)]
-        git_repos.insert_if_repo(
-            WINDOWS_DIRS
-                .cache_dir()
-                .join("Packages/Microsoft.WindowsTerminal_8wekyb3d8bbwe/LocalState"),
-        );
-
-        #[cfg(windows)]
-        windows::insert_startup_scripts(&mut git_repos).ok();
-
-        if let Some(profile) = powershell.profile() {
-            git_repos.insert_if_repo(profile);
-        }
-    }
-
-    if config.should_run(Step::GitRepos) {
-        if let Some(custom_git_repos) = config.git_repos() {
-            for git_repo in custom_git_repos {
-                git_repos.glob_insert(git_repo);
-            }
-        }
-        runner.execute(Step::GitRepos, "Git repositories", || {
-            git.multi_pull_step(&git_repos, &ctx)
-        })?;
-    }
+    runner.execute(Step::Certbot, "Certbot", || generic::run_certbot(&ctx))?;
+    runner.execute(Step::GitRepos, "Git Repositories", || git::run_git_pull(&ctx))?;
+    runner.execute(Step::ClamAvDb, "ClamAV Databases", || generic::run_freshclam(&ctx))?;
+    runner.execute(Step::PlatformioCore, "PlatformIO Core", || {
+        generic::run_platform_io(&ctx)
+    })?;
+    runner.execute(Step::Lensfun, "Lensfun's database update", || {
+        generic::run_lensfun_update_data(&ctx)
+    })?;
 
     if should_run_powershell {
         runner.execute(Step::Powershell, "Powershell Modules Update", || {
@@ -544,26 +534,3 @@ fn main() {
         }
     }
 }
-
-fn install_tracing(filter_directives: &str) -> Result<()> {
-    use tracing_subscriber::fmt;
-    use tracing_subscriber::fmt::format::FmtSpan;
-    use tracing_subscriber::layer::SubscriberExt;
-    use tracing_subscriber::util::SubscriberInitExt;
-    use tracing_subscriber::EnvFilter;
-
-    let env_filter = EnvFilter::try_new(filter_directives)
-        .or_else(|_| EnvFilter::try_from_default_env())
-        .or_else(|_| EnvFilter::try_new("info"))?;
-
-    let fmt_layer = fmt::layer()
-        .with_target(false)
-        .with_span_events(FmtSpan::NEW | FmtSpan::CLOSE)
-        .without_time();
-
-    let registry = tracing_subscriber::registry();
-
-    registry.with(env_filter).with(fmt_layer).init();
-
-    Ok(())
-}

src/runner.rs

@@ -34,6 +34,14 @@ impl<'a> Runner<'a> {
         let key = key.into();
         debug!("Step {:?}", key);
 
+        // alter the `func` to put it in a span
+        let func = || {
+            let span =
+                tracing::span!(parent: tracing::Span::none(), tracing::Level::TRACE, "step", step = ?step, key = %key);
+            let _guard = span.enter();
+            func()
+        };
+
         loop {
             match func() {
                 Ok(()) => {

src/self_renamer.rs

@@ -1,5 +1,3 @@
-#![cfg(windows)]
-
 use color_eyre::eyre::Result;
 use std::{env::current_exe, fs, path::PathBuf};
 use tracing::{debug, error};

src/self_update.rs

@@ -3,6 +3,7 @@ use std::env;
 use std::os::unix::process::CommandExt as _;
 use std::process::Command;
 
+use crate::config::Step;
 use color_eyre::eyre::{bail, Result};
 use self_update_crate::backends::github::Update;
 use self_update_crate::update::UpdateStatus;
@@ -11,52 +12,61 @@ use super::terminal::*;
 #[cfg(windows)]
 use crate::error::Upgraded;
 
-pub fn self_update() -> Result<()> {
+use crate::execution_context::ExecutionContext;
+
+pub fn self_update(ctx: &ExecutionContext) -> Result<()> {
     print_separator("Self update");
-    let current_exe = env::current_exe();
 
-    let target = self_update_crate::get_target();
-    let result = Update::configure()
-        .repo_owner("topgrade-rs")
-        .repo_name("topgrade")
-        .target(target)
-        .bin_name(if cfg!(windows) { "topgrade.exe" } else { "topgrade" })
-        .show_output(false)
-        .show_download_progress(true)
-        .current_version(self_update_crate::cargo_crate_version!())
-        .no_confirm(true)
-        .build()?
-        .update_extended()?;
-
-    if let UpdateStatus::Updated(release) = &result {
-        println!("\nTopgrade upgraded to {}:\n", release.version);
-        if let Some(body) = &release.body {
-            println!("{body}");
-        }
+    if ctx.run_type().dry() {
+        println!("Would self-update");
+        Ok(())
     } else {
-        println!("Topgrade is up-to-date");
-    }
+        let assume_yes = ctx.config().yes(Step::SelfUpdate);
+        let current_exe = env::current_exe();
 
-    {
-        if result.updated() {
-            print_warning("Respawning...");
-            let mut command = Command::new(current_exe?);
-            command.args(env::args().skip(1)).env("TOPGRADE_NO_SELF_UPGRADE", "");
+        let target = self_update_crate::get_target();
+        let result = Update::configure()
+            .repo_owner("topgrade-rs")
+            .repo_name("topgrade")
+            .target(target)
+            .bin_name(if cfg!(windows) { "topgrade.exe" } else { "topgrade" })
+            .show_output(true)
+            .show_download_progress(true)
+            .current_version(self_update_crate::cargo_crate_version!())
+            .no_confirm(assume_yes)
+            .build()?
+            .update_extended()?;
 
-            #[cfg(unix)]
-            {
-                let err = command.exec();
-                bail!(err);
+        if let UpdateStatus::Updated(release) = &result {
+            println!("\nTopgrade upgraded to {}:\n", release.version);
+            if let Some(body) = &release.body {
+                println!("{body}");
             }
+        } else {
+            println!("Topgrade is up-to-date");
+        }
 
-            #[cfg(windows)]
-            {
-                #[allow(clippy::disallowed_methods)]
-                let status = command.status()?;
-                bail!(Upgraded(status));
+        {
+            if result.updated() {
+                print_info("Respawning...");
+                let mut command = Command::new(current_exe?);
+                command.args(env::args().skip(1)).env("TOPGRADE_NO_SELF_UPGRADE", "");
+
+                #[cfg(unix)]
+                {
+                    let err = command.exec();
+                    bail!(err);
+                }
+
+                #[cfg(windows)]
+                {
+                    #[allow(clippy::disallowed_methods)]
+                    let status = command.status()?;
+                    bail!(Upgraded(status));
+                }
             }
         }
-    }
 
-    Ok(())
+        Ok(())
+    }
 }

src/steps/containers.rs

@@ -6,6 +6,7 @@ use color_eyre::eyre::eyre;
 use color_eyre::eyre::Context;
 use color_eyre::eyre::Result;
 use tracing::{debug, error, warn};
+use wildmatch::WildMatch;
 
 use crate::command::CommandExt;
 use crate::error::{self, TopgradeError};
@@ -48,7 +49,16 @@ impl Display for Container {
 
 /// Returns a Vector of all containers, with Strings in the format
 /// "REGISTRY/[PATH/]CONTAINER_NAME:TAG"
-fn list_containers(crt: &Path) -> Result<Vec<Container>> {
+///
+/// Containers specified in `ignored_containers` will be filtered out.
+fn list_containers(crt: &Path, ignored_containers: Option<&Vec<String>>) -> Result<Vec<Container>> {
+    let ignored_containers = ignored_containers.map(|patterns| {
+        patterns
+            .iter()
+            .map(|pattern| WildMatch::new(pattern))
+            .collect::<Vec<WildMatch>>()
+    });
+
     debug!(
         "Querying '{} image ls --format \"{{{{.Repository}}}}:{{{{.Tag}}}}/{{{{.ID}}}}\"' for containers",
         crt.display()
@@ -83,6 +93,13 @@ fn list_containers(crt: &Path) -> Result<Vec<Container>> {
         assert_eq!(split_res.len(), 2);
         let (repo_tag, image_id) = (split_res[0], split_res[1]);
 
+        if let Some(ref ignored_containers) = ignored_containers {
+            if ignored_containers.iter().any(|pattern| pattern.matches(repo_tag)) {
+                debug!("Skipping ignored container '{}'", line);
+                continue;
+            }
+        }
+
         debug!(
             "Querying '{} image inspect --format \"{{{{.Os}}}}/{{{{.Architecture}}}}\"' for container {}",
             crt.display(),
@@ -109,7 +126,8 @@ pub fn run_containers(ctx: &ExecutionContext) -> Result<()> {
 
     print_separator("Containers");
     let mut success = true;
-    let containers = list_containers(&crt).context("Failed to list Docker containers")?;
+    let containers =
+        list_containers(&crt, ctx.config().containers_ignored_tags()).context("Failed to list Docker containers")?;
     debug!("Containers to inspect: {:?}", containers);
 
     for container in containers.iter() {

src/steps/generic.rs

@@ -8,6 +8,7 @@ use std::{fs, io::Write};
 use color_eyre::eyre::eyre;
 use color_eyre::eyre::Context;
 use color_eyre::eyre::Result;
+use semver::Version;
 use tempfile::tempfile_in;
 use tracing::{debug, error};
 
@@ -23,6 +24,18 @@ use crate::{
     terminal::print_warning,
 };
 
+#[cfg(target_os = "linux")]
+pub fn is_wsl() -> Result<bool> {
+    let output = Command::new("uname").arg("-r").output_checked_utf8()?.stdout;
+    debug!("Uname output: {}", output);
+    Ok(output.contains("microsoft"))
+}
+
+#[cfg(not(target_os = "linux"))]
+pub fn is_wsl() -> Result<bool> {
+    Ok(false)
+}
+
 pub fn run_cargo_update(ctx: &ExecutionContext) -> Result<()> {
     let cargo_dir = env::var_os("CARGO_HOME")
         .map(PathBuf::from)
@@ -107,7 +120,10 @@ pub fn run_rubygems(ctx: &ExecutionContext) -> Result<()> {
 
     print_separator("RubyGems");
     let gem_path_str = gem.as_os_str();
-    if gem_path_str.to_str().unwrap().contains("asdf") {
+    if gem_path_str.to_str().unwrap().contains("asdf")
+        || gem_path_str.to_str().unwrap().contains(".rbenv")
+        || gem_path_str.to_str().unwrap().contains(".rvm")
+    {
         ctx.run_type()
             .execute(gem)
             .args(["update", "--system"])
@@ -214,6 +230,24 @@ pub fn run_rustup(ctx: &ExecutionContext) -> Result<()> {
     ctx.run_type().execute(rustup).arg("update").status_checked()
 }
 
+pub fn run_rye(ctx: &ExecutionContext) -> Result<()> {
+    let rye = require("rye")?;
+
+    print_separator("Rye");
+    ctx.run_type().execute(rye).args(["self", "update"]).status_checked()
+}
+
+pub fn run_elan(ctx: &ExecutionContext) -> Result<()> {
+    let elan = require("elan")?;
+
+    print_separator("elan");
+    ctx.run_type()
+        .execute(&elan)
+        .args(["self", "update"])
+        .status_checked()?;
+    ctx.run_type().execute(&elan).arg("update").status_checked()
+}
+
 pub fn run_juliaup(ctx: &ExecutionContext) -> Result<()> {
     let juliaup = require("juliaup")?;
 
@@ -287,7 +321,13 @@ pub fn run_opam_update(ctx: &ExecutionContext) -> Result<()> {
     print_separator("OCaml Package Manager");
 
     ctx.run_type().execute(&opam).arg("update").status_checked()?;
-    ctx.run_type().execute(&opam).arg("upgrade").status_checked()?;
+
+    let mut command = ctx.run_type().execute(&opam);
+    command.arg("upgrade");
+    if ctx.config().yes(Step::Opam) {
+        command.arg("--yes");
+    }
+    command.status_checked()?;
 
     if ctx.config().cleanup() {
         ctx.run_type().execute(&opam).arg("clean").status_checked()?;
@@ -318,17 +358,63 @@ pub fn run_vcpkg_update(ctx: &ExecutionContext) -> Result<()> {
     command.args(["upgrade", "--no-dry-run"]).status_checked()
 }
 
+pub fn run_vscode_extensions_update(ctx: &ExecutionContext) -> Result<()> {
+    // Calling vscode in WSL may install a server instead of updating extensions (https://github.com/topgrade-rs/topgrade/issues/594#issuecomment-1782157367)
+    if is_wsl()? {
+        return Err(SkipStep(String::from("Should not run in WSL")).into());
+    }
+
+    let vscode = require("code")?;
+
+    // Vscode has update command only since 1.86 version ("january 2024" update), disable the update for prior versions
+    // Use command `code --version` which returns 3 lines: version, git commit, instruction set. We parse only the first one
+    let version: Result<Version> = match Command::new(&vscode)
+        .arg("--version")
+        .output_checked_utf8()?
+        .stdout
+        .lines()
+        .next()
+    {
+        Some(item) => Version::parse(item).map_err(|err| err.into()),
+        _ => return Err(SkipStep(String::from("Cannot find vscode version")).into()),
+    };
+
+    if !matches!(version, Ok(version) if version >= Version::new(1, 86, 0)) {
+        return Err(SkipStep(String::from("Too old vscode version to have update extensions command")).into());
+    }
+
+    print_separator("Visual Studio Code extensions");
+
+    ctx.run_type()
+        .execute(vscode)
+        .arg("--update-extensions")
+        .status_checked()
+}
+
 pub fn run_pipx_update(ctx: &ExecutionContext) -> Result<()> {
     let pipx = require("pipx")?;
     print_separator("pipx");
 
-    ctx.run_type().execute(pipx).arg("upgrade-all").status_checked()
+    let mut command_args = vec!["upgrade-all", "--include-injected"];
+
+    // pipx version 1.4.0 introduced a new command argument `pipx upgrade-all --quiet`
+    // (see https://pipx.pypa.io/stable/docs/#pipx-upgrade-all)
+    let version_str = Command::new(&pipx)
+        .args(["--version"])
+        .output_checked_utf8()
+        .map(|s| s.stdout.trim().to_owned());
+    let version = Version::parse(&version_str?);
+    if matches!(version, Ok(version) if version >= Version::new(1, 4, 0)) {
+        command_args.push("--quiet")
+    }
+
+    ctx.run_type().execute(pipx).args(command_args).status_checked()
 }
 
 pub fn run_conda_update(ctx: &ExecutionContext) -> Result<()> {
     let conda = require("conda")?;
 
-    let output = Command::new("conda")
+    let output = Command::new(&conda)
         .args(["config", "--show", "auto_activate_base"])
         .output_checked_utf8()?;
     debug!("Conda output: {}", output.stdout);
@@ -349,7 +435,7 @@ pub fn run_conda_update(ctx: &ExecutionContext) -> Result<()> {
 pub fn run_mamba_update(ctx: &ExecutionContext) -> Result<()> {
     let mamba = require("mamba")?;
 
-    let output = Command::new("mamba")
+    let output = Command::new(&mamba)
         .args(["config", "--show", "auto_activate_base"])
         .output_checked_utf8()?;
     debug!("Mamba output: {}", output.stdout);
@@ -367,6 +453,16 @@ pub fn run_mamba_update(ctx: &ExecutionContext) -> Result<()> {
     command.status_checked()
 }
 
+pub fn run_miktex_packages_update(ctx: &ExecutionContext) -> Result<()> {
+    let miktex = require("miktex")?;
+    print_separator("miktex");
+
+    ctx.run_type()
+        .execute(miktex)
+        .args(["packages", "update"])
+        .status_checked()
+}
+
 pub fn run_pip3_update(ctx: &ExecutionContext) -> Result<()> {
     let py = require("python").and_then(check_is_python_2_or_shim);
     let py3 = require("python3").and_then(check_is_python_2_or_shim);
@@ -383,26 +479,59 @@ pub fn run_pip3_update(ctx: &ExecutionContext) -> Result<()> {
     Command::new(&python3)
         .args(["-m", "pip"])
         .output_checked_utf8()
-        .map_err(|_| SkipStep("pip does not exists".to_string()))?;
+        .map_err(|_| SkipStep("pip does not exist".to_string()))?;
 
-    let check_externally_managed = "import sysconfig; from os import path; print('Y') if path.isfile(path.join(sysconfig.get_path('stdlib'), 'EXTERNALLY-MANAGED')) else print('N')";
-    Command::new(&python3)
-        .args(["-c", check_externally_managed])
+    let check_extern_managed_script = "import sysconfig; from os import path; print('Y') if path.isfile(path.join(sysconfig.get_path('stdlib'), 'EXTERNALLY-MANAGED')) else print('N')";
+    let output = Command::new(&python3)
+        .args(["-c", check_extern_managed_script])
+        .output_checked_utf8()?;
+    let stdout = output.stdout.trim();
+    let extern_managed = match stdout {
+        "N" => false,
+        "Y" => true,
+        _ => unreachable!("unexpected output from `check_extern_managed_script`"),
+    };
+
+    let allow_break_sys_pkg = match Command::new(&python3)
+        .args(["-m", "pip", "config", "get", "global.break-system-packages"])
         .output_checked_utf8()
-        .map_err(|_| SkipStep("pip may be externally managed".to_string()))
-        .and_then(|output| match output.stdout.trim() {
-            "N" => Ok(()),
-            "Y" => Err(SkipStep("pip is externally managed".to_string())),
-            _ => {
-                print_warning("Unexpected output when checking EXTERNALLY-MANAGED");
-                print_warning(output.stdout.trim());
-                Err(SkipStep("pip may be externally managed".to_string()))
-            }
-        })?;
+    {
+        Ok(output) => {
+            let stdout = output.stdout.trim();
+            stdout
+                .parse::<bool>()
+                .expect("unexpected output that is not `true` or `false`")
+        }
+        // it can fail because this key may not be set
+        //
+        // ```sh
+        // $ pip --version
+        // pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
+        //
+        // $ pip config get global.break-system-packages
+        // ERROR: No such key - global.break-system-packages
+        //
+        // $ echo $?
+        // 1
+        // ```
+        Err(_) => false,
+    };
+
+    debug!("pip3 externally managed: {} ", extern_managed);
+    debug!("pip3 global.break-system-packages: {}", allow_break_sys_pkg);
+
+    // Even though pip3 is externally managed, we should still update it if
+    // `global.break-system-packages` is true.
+    if extern_managed && !allow_break_sys_pkg {
+        return Err(SkipStep(
+            "Skip pip3 update as it is externally managed and global.break-system-packages is not true".to_string(),
+        )
+        .into());
+    }
 
     print_separator("pip3");
     if env::var("VIRTUAL_ENV").is_ok() {
-        print_warning("This step is will be skipped when running inside a virtual environment");
+        print_warning("This step is skipped when running inside a virtual environment");
         return Err(SkipStep("Does not run inside a virtual environment".to_string()).into());
     }
 
@@ -430,6 +559,7 @@ pub fn run_pip_review_update(ctx: &ExecutionContext) -> Result<()> {
 
     Ok(())
 }
+
 pub fn run_pip_review_local_update(ctx: &ExecutionContext) -> Result<()> {
     let pip_review = require("pip-review")?;
 
@@ -449,6 +579,7 @@ pub fn run_pip_review_local_update(ctx: &ExecutionContext) -> Result<()> {
 
     Ok(())
 }
+
 pub fn run_pipupgrade_update(ctx: &ExecutionContext) -> Result<()> {
     let pipupgrade = require("pipupgrade")?;
 
@@ -466,6 +597,7 @@ pub fn run_pipupgrade_update(ctx: &ExecutionContext) -> Result<()> {
 
     Ok(())
 }
+
 pub fn run_stack_update(ctx: &ExecutionContext) -> Result<()> {
     if require("ghcup").is_ok() {
         // `ghcup` is present and probably(?) being used to install `stack`.
@@ -582,7 +714,7 @@ pub fn run_composer_update(ctx: &ExecutionContext) -> Result<()> {
 
     if !composer_home.is_descendant_of(&HOME_DIR) {
         return Err(SkipStep(format!(
-            "Composer directory {} isn't a decandent of the user's home directory",
+            "Composer directory {} isn't a descendant of the user's home directory",
             composer_home.display()
         ))
         .into());
@@ -636,6 +768,10 @@ pub fn run_dotnet_upgrade(ctx: &ExecutionContext) -> Result<()> {
         .run_type()
         .execute(&dotnet)
         .args(["tool", "list", "--global"])
+        // dotnet will print a greeting message on its first run, from this question:
+        // https://stackoverflow.com/q/70493706/14092446
+        // Setting `DOTNET_NOLOGO` to `true` should disable it
+        .env("DOTNET_NOLOGO", "true")
         .output_checked_utf8()
     {
         Ok(output) => output,
@@ -643,10 +779,11 @@ pub fn run_dotnet_upgrade(ctx: &ExecutionContext) -> Result<()> {
             return Err(SkipStep(String::from(
                 "Error running `dotnet tool list`. This is expected when a dotnet runtime is installed but no SDK.",
             ))
-            .into())
+            .into());
         }
     };
 
+    let mut in_header = true;
     let mut packages = output
         .stdout
         .lines()
@@ -654,11 +791,17 @@ pub fn run_dotnet_upgrade(ctx: &ExecutionContext) -> Result<()> {
         //
         // Package Id      Version      Commands
         // -------------------------------------
-        //
-        // One thing to note is that .NET SDK respect locale, which means this
-        // header can be printed in languages other than English, do NOT use it
-        // to do any check.
-        .skip(2)
+        .skip_while(|line| {
+            // The .NET SDK respects locale, so the header can be printed
+            // in languages other than English. The separator should hopefully
+            // always be at least 10 -'s long.
+            if in_header && line.starts_with("----------") {
+                in_header = false;
+                true
+            } else {
+                in_header
+            }
+        })
         .filter(|line| !line.is_empty())
         .peekable();
 
@@ -681,20 +824,19 @@ pub fn run_dotnet_upgrade(ctx: &ExecutionContext) -> Result<()> {
 }
 
 pub fn run_helix_grammars(ctx: &ExecutionContext) -> Result<()> {
-    require("helix")?;
+    let helix = require("helix").or(require("hx"))?;
 
     print_separator("Helix");
 
-    let sudo = require_option(ctx.sudo().as_ref(), REQUIRE_SUDO.to_string())?;
     ctx.run_type()
-        .execute(sudo)
-        .args(["helix", "--grammar", "fetch"])
+        .execute(&helix)
+        .args(["--grammar", "fetch"])
         .status_checked()
         .with_context(|| "Failed to download helix grammars!")?;
 
     ctx.run_type()
-        .execute(sudo)
-        .args(["helix", "--grammar", "build"])
+        .execute(&helix)
+        .args(["--grammar", "build"])
         .status_checked()
         .with_context(|| "Failed to build helix grammars!")?;
 
@@ -793,3 +935,70 @@ pub fn run_bob(ctx: &ExecutionContext) -> Result<()> {
 
     ctx.run_type().execute(bob).args(["update", "--all"]).status_checked()
 }
+
+pub fn run_certbot(ctx: &ExecutionContext) -> Result<()> {
+    let sudo = require_option(ctx.sudo().as_ref(), REQUIRE_SUDO.to_string())?;
+    let certbot = require("certbot")?;
+
+    print_separator("Certbot");
+
+    let mut cmd = ctx.run_type().execute(sudo);
+    cmd.arg(certbot);
+    cmd.arg("renew");
+
+    cmd.status_checked()
+}
+
+/// Run `$ freshclam` to update ClamAV signature database
+///
+/// doc: https://docs.clamav.net/manual/Usage/SignatureManagement.html#freshclam
+pub fn run_freshclam(ctx: &ExecutionContext) -> Result<()> {
+    let freshclam = require("freshclam")?;
+    print_separator("Update ClamAV Database(FreshClam)");
+    ctx.run_type().execute(freshclam).status_checked()
+}
+
+/// Involve `pio upgrade` to update PlatformIO core.
+pub fn run_platform_io(ctx: &ExecutionContext) -> Result<()> {
+    // We use the full path because by default the binary is not in `PATH`:
+    // https://github.com/topgrade-rs/topgrade/issues/754#issuecomment-2020537559
+    #[cfg(unix)]
+    fn bin_path() -> PathBuf {
+        HOME_DIR.join(".platformio/penv/bin/pio")
+    }
+    #[cfg(windows)]
+    fn bin_path() -> PathBuf {
+        HOME_DIR.join(".platformio/penv/Scripts/pio.exe")
+    }
+
+    let bin_path = require(bin_path())?;
+
+    print_separator("PlatformIO Core");
+
+    ctx.run_type().execute(bin_path).arg("upgrade").status_checked()
+}
+
+/// Run `lensfun-update-data` to update lensfun database.
+///
+/// `sudo` will be used if `use_sudo` configuration entry is set to true.
+pub fn run_lensfun_update_data(ctx: &ExecutionContext) -> Result<()> {
+    const SEPARATOR: &str = "Lensfun's database update";
+    let lensfun_update_data = require("lensfun-update-data")?;
+    const EXIT_CODE_WHEN_NO_UPDATE: i32 = 1;
+
+    if ctx.config().lensfun_use_sudo() {
+        let sudo = require_option(ctx.sudo().as_ref(), REQUIRE_SUDO.to_string())?;
+        print_separator(SEPARATOR);
+        ctx.run_type()
+            .execute(sudo)
+            .arg(lensfun_update_data)
+            // `lensfun-update-data` returns 1 when there is no update available
+            // which should be considered success
+            .status_checked_with_codes(&[EXIT_CODE_WHEN_NO_UPDATE])
+    } else {
+        print_separator(SEPARATOR);
+        ctx.run_type()
+            .execute(lensfun_update_data)
+            .status_checked_with_codes(&[EXIT_CODE_WHEN_NO_UPDATE])
+    }
+}

src/steps/git.rs

@@ -3,138 +3,173 @@ use std::io;
 use std::path::{Path, PathBuf};
 use std::process::{Command, Output, Stdio};
 
+use color_eyre::eyre::Context;
 use color_eyre::eyre::{eyre, Result};
 use console::style;
-use futures::stream::{iter, FuturesUnordered};
-use futures::StreamExt;
+use futures::stream::{iter, FuturesUnordered, StreamExt};
 use glob::{glob_with, MatchOptions};
 use tokio::process::Command as AsyncCommand;
 use tokio::runtime;
 use tracing::{debug, error};
 
 use crate::command::CommandExt;
+use crate::config::Step;
 use crate::execution_context::ExecutionContext;
+use crate::steps::emacs::Emacs;
 use crate::terminal::print_separator;
-use crate::utils::{which, PathExt};
-use crate::{error::SkipStep, terminal::print_warning};
+use crate::utils::{require, PathExt};
+use crate::{error::SkipStep, terminal::print_warning, HOME_DIR};
+use etcetera::base_strategy::BaseStrategy;
+
+#[cfg(unix)]
+use crate::XDG_DIRS;
+
+#[cfg(windows)]
+use crate::WINDOWS_DIRS;
+
+pub fn run_git_pull(ctx: &ExecutionContext) -> Result<()> {
+    let mut repos = RepoStep::try_new()?;
+    let config = ctx.config();
+
+    // handle built-in repos
+    if config.use_predefined_git_repos() {
+        // should be executed on all the platforms
+        {
+            if config.should_run(Step::Emacs) {
+                let emacs = Emacs::new();
+                if !emacs.is_doom() {
+                    if let Some(directory) = emacs.directory() {
+                        repos.insert_if_repo(directory);
+                    }
+                }
+                repos.insert_if_repo(HOME_DIR.join(".doom.d"));
+            }
+
+            if config.should_run(Step::Vim) {
+                repos.insert_if_repo(HOME_DIR.join(".vim"));
+                repos.insert_if_repo(HOME_DIR.join(".config/nvim"));
+            }
+
+            repos.insert_if_repo(HOME_DIR.join(".ideavimrc"));
+            repos.insert_if_repo(HOME_DIR.join(".intellimacs"));
+
+            if config.should_run(Step::Rcm) {
+                repos.insert_if_repo(HOME_DIR.join(".dotfiles"));
+            }
+
+            let powershell = crate::steps::powershell::Powershell::new();
+            if let Some(profile) = powershell.profile() {
+                repos.insert_if_repo(profile);
+            }
+        }
+
+        #[cfg(unix)]
+        {
+            repos.insert_if_repo(crate::steps::zsh::zshrc());
+            if config.should_run(Step::Tmux) {
+                repos.insert_if_repo(HOME_DIR.join(".tmux"));
+            }
+            repos.insert_if_repo(HOME_DIR.join(".config/fish"));
+            repos.insert_if_repo(XDG_DIRS.config_dir().join("openbox"));
+            repos.insert_if_repo(XDG_DIRS.config_dir().join("bspwm"));
+            repos.insert_if_repo(XDG_DIRS.config_dir().join("i3"));
+            repos.insert_if_repo(XDG_DIRS.config_dir().join("sway"));
+        }
+
+        #[cfg(windows)]
+        {
+            repos.insert_if_repo(
+                WINDOWS_DIRS
+                    .cache_dir()
+                    .join("Packages/Microsoft.WindowsTerminal_8wekyb3d8bbwe/LocalState"),
+            );
+
+            super::os::windows::insert_startup_scripts(&mut repos).ok();
+        }
+    }
+
+    // Handle user-defined repos
+    if let Some(custom_git_repos) = config.git_repos() {
+        for git_repo in custom_git_repos {
+            repos.glob_insert(git_repo);
+        }
+    }
+
+    // Warn the user about the bad patterns.
+    //
+    // NOTE: this should be executed **before** skipping the Git step or the
+    // user won't receive this warning in the cases where all the paths configured
+    // are bad patterns.
+    repos
+        .bad_patterns
+        .iter()
+        .for_each(|pattern| print_warning(format!("Path {pattern} did not contain any git repositories")));
+
+    if repos.is_repos_empty() {
+        return Err(SkipStep(String::from("No repositories to pull")).into());
+    }
+
+    print_separator("Git repositories");
+
+    repos.pull_repos(ctx)
+}
 
 #[cfg(windows)]
 static PATH_PREFIX: &str = "\\\\?\\";
 
-#[derive(Debug)]
-pub struct Git {
-    git: Option<PathBuf>,
-}
-
-pub struct Repositories<'a> {
-    git: &'a Git,
-    repositories: HashSet<String>,
+pub struct RepoStep {
+    git: PathBuf,
+    repos: HashSet<PathBuf>,
     glob_match_options: MatchOptions,
     bad_patterns: Vec<String>,
 }
 
+#[track_caller]
 fn output_checked_utf8(output: Output) -> Result<()> {
     if !(output.status.success()) {
-        let stderr = String::from_utf8(output.stderr).unwrap();
-        Err(eyre!(stderr))
+        let stderr = String::from_utf8_lossy(&output.stderr);
+        let stderr = stderr.trim();
+        Err(eyre!("{stderr}"))
     } else {
         Ok(())
     }
 }
 
-async fn pull_repository(repo: String, git: &Path, ctx: &ExecutionContext<'_>) -> Result<()> {
-    let path = repo.to_string();
-    let before_revision = get_head_revision(git, &repo);
-
-    println!("{} {}", style("Pulling").cyan().bold(), path);
-
-    let mut command = AsyncCommand::new(git);
-
-    command
-        .stdin(Stdio::null())
-        .current_dir(&repo)
-        .args(["pull", "--ff-only"]);
-
-    if let Some(extra_arguments) = ctx.config().git_arguments() {
-        command.args(extra_arguments.split_whitespace());
-    }
-
-    let pull_output = command.output().await?;
-    let submodule_output = AsyncCommand::new(git)
-        .args(["submodule", "update", "--recursive"])
-        .current_dir(&repo)
-        .stdin(Stdio::null())
-        .output()
-        .await?;
-    let result = output_checked_utf8(pull_output).and_then(|_| output_checked_utf8(submodule_output));
-
-    if let Err(message) = &result {
-        println!("{} pulling {}", style("Failed").red().bold(), &repo);
-        print!("{message}");
-    } else {
-        let after_revision = get_head_revision(git, &repo);
-
-        match (&before_revision, &after_revision) {
-            (Some(before), Some(after)) if before != after => {
-                println!("{} {}:", style("Changed").yellow().bold(), &repo);
-
-                Command::new(git)
-                    .stdin(Stdio::null())
-                    .current_dir(&repo)
-                    .args([
-                        "--no-pager",
-                        "log",
-                        "--no-decorate",
-                        "--oneline",
-                        &format!("{before}..{after}"),
-                    ])
-                    .status_checked()?;
-                println!();
-            }
-            _ => {
-                println!("{} {}", style("Up-to-date").green().bold(), &repo);
-            }
-        }
-    }
-
-    result.map(|_| ())
-}
-
-fn get_head_revision(git: &Path, repo: &str) -> Option<String> {
+fn get_head_revision<P: AsRef<Path>>(git: &Path, repo: P) -> Option<String> {
     Command::new(git)
         .stdin(Stdio::null())
-        .current_dir(repo)
+        .current_dir(repo.as_ref())
         .args(["rev-parse", "HEAD"])
         .output_checked_utf8()
         .map(|output| output.stdout.trim().to_string())
         .map_err(|e| {
-            error!("Error getting revision for {}: {}", repo, e);
+            error!("Error getting revision for {}: {}", repo.as_ref().display(), e);
 
             e
         })
         .ok()
 }
 
-fn has_remotes(git: &Path, repo: &str) -> Option<bool> {
-    Command::new(git)
-        .stdin(Stdio::null())
-        .current_dir(repo)
-        .args(["remote", "show"])
-        .output_checked_utf8()
-        .map(|output| output.stdout.lines().count() > 0)
-        .map_err(|e| {
-            error!("Error getting remotes for {}: {}", repo, e);
-            e
-        })
-        .ok()
-}
+impl RepoStep {
+    /// Try to create a `RepoStep`, fail if `git` is not found.
+    pub fn try_new() -> Result<Self> {
+        let git = require("git")?;
+        let mut glob_match_options = MatchOptions::new();
 
-impl Git {
-    pub fn new() -> Self {
-        Self { git: which("git") }
+        if cfg!(windows) {
+            glob_match_options.case_sensitive = false;
+        }
+
+        Ok(Self {
+            git,
+            repos: HashSet::new(),
+            bad_patterns: Vec::new(),
+            glob_match_options,
+        })
     }
 
-    pub fn get_repo_root<P: AsRef<Path>>(&self, path: P) -> Option<String> {
+    /// Try to get the root of the repo specified in `path`.
+    pub fn get_repo_root<P: AsRef<Path>>(&self, path: P) -> Option<PathBuf> {
         match path.as_ref().canonicalize() {
             Ok(mut path) => {
                 debug_assert!(path.exists());
@@ -158,111 +193,56 @@ impl Git {
                     path_string
                 };
 
-                if let Some(git) = &self.git {
-                    let output = Command::new(git)
-                        .stdin(Stdio::null())
-                        .current_dir(path)
-                        .args(["rev-parse", "--show-toplevel"])
-                        .output_checked_utf8()
-                        .ok()
-                        .map(|output| output.stdout.trim().to_string());
-                    return output;
-                }
+                let output = Command::new(&self.git)
+                    .stdin(Stdio::null())
+                    .current_dir(path)
+                    .args(["rev-parse", "--show-toplevel"])
+                    .output_checked_utf8()
+                    .ok()
+                    // trim the last newline char
+                    .map(|output| PathBuf::from(output.stdout.trim()));
+
+                return output;
             }
             Err(e) => match e.kind() {
-                io::ErrorKind::NotFound => debug!("{} does not exists", path.as_ref().display()),
+                io::ErrorKind::NotFound => debug!("{} does not exist", path.as_ref().display()),
                 _ => error!("Error looking for {}: {}", path.as_ref().display(), e),
             },
         }
 
         None
     }
-    pub fn multi_pull_step(&self, repositories: &Repositories, ctx: &ExecutionContext) -> Result<()> {
-        // Warn the user about the bad patterns.
-        //
-        // NOTE: this should be executed **before** skipping the Git step or the
-        // user won't receive this warning in the cases where all the paths configured
-        // are bad patterns.
-        repositories
-            .bad_patterns
-            .iter()
-            .for_each(|pattern| print_warning(format!("Path {pattern} did not contain any git repositories")));
-
-        if repositories.repositories.is_empty() {
-            return Err(SkipStep(String::from("No repositories to pull")).into());
-        }
-
-        print_separator("Git repositories");
-        self.multi_pull(repositories, ctx)
-    }
-
-    pub fn multi_pull(&self, repositories: &Repositories, ctx: &ExecutionContext) -> Result<()> {
-        let git = self.git.as_ref().unwrap();
-
-        if ctx.run_type().dry() {
-            repositories
-                .repositories
-                .iter()
-                .for_each(|repo| println!("Would pull {}", &repo));
-
-            return Ok(());
-        }
-
-        let futures_iterator = repositories
-            .repositories
-            .iter()
-            .filter(|repo| match has_remotes(git, repo) {
-                Some(false) => {
-                    println!(
-                        "{} {} because it has no remotes",
-                        style("Skipping").yellow().bold(),
-                        repo
-                    );
-                    false
-                }
-                _ => true, // repo has remotes or command to check for remotes has failed. proceed to pull anyway.
-            })
-            .map(|repo| pull_repository(repo.clone(), git, ctx));
-
-        let stream_of_futures = if let Some(limit) = ctx.config().git_concurrency_limit() {
-            iter(futures_iterator).buffer_unordered(limit).boxed()
-        } else {
-            futures_iterator.collect::<FuturesUnordered<_>>().boxed()
-        };
-
-        let basic_rt = runtime::Runtime::new()?;
-        let results = basic_rt.block_on(async { stream_of_futures.collect::<Vec<Result<()>>>().await });
-
-        let error = results.into_iter().find(|r| r.is_err());
-        error.unwrap_or(Ok(()))
-    }
-}
-
-impl<'a> Repositories<'a> {
-    pub fn new(git: &'a Git) -> Self {
-        let mut glob_match_options = MatchOptions::new();
-
-        if cfg!(windows) {
-            glob_match_options.case_sensitive = false;
-        }
-
-        Self {
-            git,
-            repositories: HashSet::new(),
-            bad_patterns: Vec::new(),
-            glob_match_options,
-        }
-    }
 
+    /// Check if `path` is a git repo, if yes, add it to `self.repos`.
+    ///
+    /// Return the check result.
     pub fn insert_if_repo<P: AsRef<Path>>(&mut self, path: P) -> bool {
-        if let Some(repo) = self.git.get_repo_root(path) {
-            self.repositories.insert(repo);
+        if let Some(repo) = self.get_repo_root(path) {
+            self.repos.insert(repo);
             true
         } else {
             false
         }
     }
 
+    /// Check if `repo` has a remote.
+    fn has_remotes<P: AsRef<Path>>(&self, repo: P) -> Option<bool> {
+        let mut cmd = Command::new(&self.git);
+        cmd.stdin(Stdio::null())
+            .current_dir(repo.as_ref())
+            .args(["remote", "show"]);
+
+        let res = cmd.output_checked_utf8();
+
+        res.map(|output| output.stdout.lines().count() > 0)
+            .map_err(|e| {
+                error!("Error getting remotes for {}: {}", repo.as_ref().display(), e);
+                e
+            })
+            .ok()
+    }
+
+    /// Similar to `insert_if_repo`, with glob support.
     pub fn glob_insert(&mut self, pattern: &str) {
         if let Ok(glob) = glob_with(pattern, self.glob_match_options) {
             let mut last_git_repo: Option<PathBuf> = None;
@@ -272,7 +252,7 @@ impl<'a> Repositories<'a> {
                         if let Some(last_git_repo) = &last_git_repo {
                             if path.is_descendant_of(last_git_repo) {
                                 debug!(
-                                    "Skipping {} because it's a decendant of last known repo {}",
+                                    "Skipping {} because it's a descendant of last known repo {}",
                                     path.display(),
                                     last_git_repo.display()
                                 );
@@ -297,14 +277,130 @@ impl<'a> Repositories<'a> {
         }
     }
 
-    #[cfg(unix)]
-    pub fn is_empty(&self) -> bool {
-        self.repositories.is_empty()
+    /// True if `self.repos` is empty.
+    pub fn is_repos_empty(&self) -> bool {
+        self.repos.is_empty()
     }
 
+    /// Remove `path` from `self.repos`.
+    ///
+    // `cfg(unix)` because it is only used in the oh-my-zsh step.
     #[cfg(unix)]
-    pub fn remove(&mut self, path: &str) {
-        let _removed = self.repositories.remove(path);
+    pub fn remove<P: AsRef<Path>>(&mut self, path: P) {
+        let _removed = self.repos.remove(path.as_ref());
         debug_assert!(_removed);
     }
+
+    /// Try to pull a repo.
+    async fn pull_repo<P: AsRef<Path>>(&self, ctx: &ExecutionContext<'_>, repo: P) -> Result<()> {
+        let before_revision = get_head_revision(&self.git, &repo);
+
+        if ctx.config().verbose() {
+            println!("{} {}", style("Pulling").cyan().bold(), repo.as_ref().display());
+        }
+
+        let mut command = AsyncCommand::new(&self.git);
+
+        command
+            .stdin(Stdio::null())
+            .current_dir(&repo)
+            .args(["pull", "--ff-only"]);
+
+        if let Some(extra_arguments) = ctx.config().git_arguments() {
+            command.args(extra_arguments.split_whitespace());
+        }
+
+        let pull_output = command.output().await?;
+        let submodule_output = AsyncCommand::new(&self.git)
+            .args(["submodule", "update", "--recursive"])
+            .current_dir(&repo)
+            .stdin(Stdio::null())
+            .output()
+            .await?;
+        let result = output_checked_utf8(pull_output)
+            .and_then(|_| output_checked_utf8(submodule_output))
+            .wrap_err_with(|| format!("Failed to pull {}", repo.as_ref().display()));
+
+        if result.is_err() {
+            println!("{} pulling {}", style("Failed").red().bold(), repo.as_ref().display());
+        } else {
+            let after_revision = get_head_revision(&self.git, repo.as_ref());
+
+            match (&before_revision, &after_revision) {
+                (Some(before), Some(after)) if before != after => {
+                    println!("{} {}", style("Changed").yellow().bold(), repo.as_ref().display());
+
+                    Command::new(&self.git)
+                        .stdin(Stdio::null())
+                        .current_dir(&repo)
+                        .args([
+                            "--no-pager",
+                            "log",
+                            "--no-decorate",
+                            "--oneline",
+                            &format!("{before}..{after}"),
+                        ])
+                        .status_checked()?;
+                    println!();
+                }
+                _ => {
+                    if ctx.config().verbose() {
+                        println!("{} {}", style("Up-to-date").green().bold(), repo.as_ref().display());
+                    }
+                }
+            }
+        }
+
+        result.map(|_| ())
+    }
+
+    /// Pull the repositories specified in `self.repos`.
+    ///
+    /// # NOTE
+    /// This function will create an async runtime and do the real job so the
+    /// function itself is not async.
+    fn pull_repos(&self, ctx: &ExecutionContext) -> Result<()> {
+        if ctx.run_type().dry() {
+            self.repos
+                .iter()
+                .for_each(|repo| println!("Would pull {}", repo.display()));
+
+            return Ok(());
+        }
+
+        if !ctx.config().verbose() {
+            println!(
+                "\n{} updated repositories will be shown...\n",
+                style("Only").green().bold()
+            );
+        }
+
+        let futures_iterator = self
+            .repos
+            .iter()
+            .filter(|repo| match self.has_remotes(repo) {
+                Some(false) => {
+                    println!(
+                        "{} {} because it has no remotes",
+                        style("Skipping").yellow().bold(),
+                        repo.display()
+                    );
+                    false
+                }
+                _ => true, // repo has remotes or command to check for remotes has failed. proceed to pull anyway.
+            })
+            .map(|repo| self.pull_repo(ctx, repo));
+
+        let stream_of_futures = if let Some(limit) = ctx.config().git_concurrency_limit() {
+            iter(futures_iterator).buffer_unordered(limit).boxed()
+        } else {
+            futures_iterator.collect::<FuturesUnordered<_>>().boxed()
+        };
+
+        let basic_rt = runtime::Runtime::new()?;
+        let results = basic_rt.block_on(async { stream_of_futures.collect::<Vec<Result<()>>>().await });
+
+        let error = results.into_iter().find(|r| r.is_err());
+        error.unwrap_or(Ok(()))
+    }
 }

src/steps/os/archlinux.rs

@@ -277,7 +277,7 @@ impl Aura {
 
 impl ArchPackageManager for Aura {
     fn upgrade(&self, ctx: &ExecutionContext) -> Result<()> {
-        let sudo = which("sudo").unwrap_or_else(PathBuf::new);
+        let sudo = which("sudo").unwrap_or_default();
         let mut aur_update = ctx.run_type().execute(&sudo);
 
         if sudo.ends_with("sudo") {

src/steps/os/dragonfly.rs

@@ -2,13 +2,14 @@ use crate::command::CommandExt;
 use crate::execution_context::ExecutionContext;
 use crate::terminal::print_separator;
 use crate::utils::{require_option, REQUIRE_SUDO};
+use crate::Step;
 use color_eyre::eyre::Result;
 use std::process::Command;
 
 pub fn upgrade_packages(ctx: &ExecutionContext) -> Result<()> {
     let sudo = require_option(ctx.sudo().as_ref(), REQUIRE_SUDO.to_string())?;
     print_separator("DragonFly BSD Packages");
-    let mut cmd = ctx.execute(sudo);
+    let mut cmd = ctx.run_type().execute(sudo);
     cmd.args(["/usr/local/sbin/pkg", "upgrade"]);
     if ctx.config().yes(Step::System) {
         cmd.arg("-y");
@@ -18,9 +19,16 @@ pub fn upgrade_packages(ctx: &ExecutionContext) -> Result<()> {
 
 pub fn audit_packages(ctx: &ExecutionContext) -> Result<()> {
     let sudo = require_option(ctx.sudo().as_ref(), REQUIRE_SUDO.to_string())?;
-    println!();
-    Command::new(sudo)
+
+    print_separator("DragonFly BSD Audit");
+
+    #[allow(clippy::disallowed_methods)]
+    if !Command::new(sudo)
         .args(["/usr/local/sbin/pkg", "audit", "-Fr"])
-        .status_checked()?;
+        .status()?
+        .success()
+    {
+        println!("The package audit was successful, but vulnerable packages still remain on the system");
+    }
     Ok(())
 }

src/steps/os/freebsd.rs

@@ -30,7 +30,9 @@ pub fn upgrade_packages(ctx: &ExecutionContext) -> Result<()> {
 
 pub fn audit_packages(ctx: &ExecutionContext) -> Result<()> {
     let sudo = require_option(ctx.sudo().as_ref(), REQUIRE_SUDO.to_string())?;
-    println!();
+
+    print_separator("FreeBSD Audit");
+
     Command::new(sudo)
         .args(["/usr/sbin/pkg", "audit", "-Fr"])
         .status_checked()?;

src/steps/os/linux.rs

@@ -8,8 +8,9 @@ use tracing::{debug, warn};
 use crate::command::CommandExt;
 use crate::error::{SkipStep, TopgradeError};
 use crate::execution_context::ExecutionContext;
+use crate::steps::generic::is_wsl;
 use crate::steps::os::archlinux;
-use crate::terminal::print_separator;
+use crate::terminal::{print_separator, prompt_yesno};
 use crate::utils::{require, require_option, which, PathExt, REQUIRE_SUDO};
 use crate::{Step, HOME_DIR};
 
@@ -19,12 +20,14 @@ static OS_RELEASE_PATH: &str = "/etc/os-release";
 #[derive(Copy, Clone, Debug, PartialEq, Eq)]
 pub enum Distribution {
     Alpine,
+    Wolfi,
     Arch,
     Bedrock,
     CentOS,
+    Chimera,
     ClearLinux,
     Fedora,
-    FedoraSilverblue,
+    FedoraImmutable,
     Debian,
     Gentoo,
     OpenMandriva,
@@ -38,6 +41,7 @@ pub enum Distribution {
     Exherbo,
     NixOS,
     KDENeon,
+    Nobara,
 }
 
 impl Distribution {
@@ -45,27 +49,31 @@ impl Distribution {
         let section = os_release.general_section();
         let id = section.get("ID");
         let name = section.get("NAME");
-        let variant: Option<Vec<&str>> = section.get("VARIANT").map(|s| s.split_whitespace().collect());
+        let variant = section.get("VARIANT");
         let id_like: Option<Vec<&str>> = section.get("ID_LIKE").map(|s| s.split_whitespace().collect());
 
         Ok(match id {
             Some("alpine") => Distribution::Alpine,
+            Some("chimera") => Distribution::Chimera,
+            Some("wolfi") => Distribution::Wolfi,
             Some("centos") | Some("rhel") | Some("ol") => Distribution::CentOS,
             Some("clear-linux-os") => Distribution::ClearLinux,
-            Some("fedora") | Some("nobara") => {
+            Some("fedora") => {
                 return if let Some(variant) = variant {
-                    if variant.contains(&"Silverblue") {
-                        Ok(Distribution::FedoraSilverblue)
-                    } else {
-                        Ok(Distribution::Fedora)
+                    match variant {
+                        "Silverblue" | "Kinoite" | "Sericea" | "Onyx" | "IoT Edition" | "Sway Atomic" => {
+                            Ok(Distribution::FedoraImmutable)
+                        }
+                        _ => Ok(Distribution::Fedora),
                     }
                 } else {
                     Ok(Distribution::Fedora)
-                }
+                };
             }
 
+            Some("nobara") => Distribution::Nobara,
             Some("void") => Distribution::Void,
-            Some("debian") | Some("pureos") | Some("Deepin") => Distribution::Debian,
+            Some("debian") | Some("pureos") | Some("Deepin") | Some("linuxmint") => Distribution::Debian,
             Some("arch") | Some("manjaro-arm") | Some("garuda") | Some("artix") => Distribution::Arch,
             Some("solus") => Distribution::Solus,
             Some("gentoo") => Distribution::Gentoo,
@@ -129,9 +137,11 @@ impl Distribution {
 
         match self {
             Distribution::Alpine => upgrade_alpine_linux(ctx),
+            Distribution::Chimera => upgrade_chimera_linux(ctx),
+            Distribution::Wolfi => upgrade_wolfi_linux(ctx),
             Distribution::Arch => archlinux::upgrade_arch_linux(ctx),
             Distribution::CentOS | Distribution::Fedora => upgrade_redhat(ctx),
-            Distribution::FedoraSilverblue => upgrade_fedora_silverblue(ctx),
+            Distribution::FedoraImmutable => upgrade_fedora_immutable(ctx),
             Distribution::ClearLinux => upgrade_clearlinux(ctx),
             Distribution::Debian => upgrade_debian(ctx),
             Distribution::Gentoo => upgrade_gentoo(ctx),
@@ -147,6 +157,7 @@ impl Distribution {
             Distribution::Bedrock => update_bedrock(ctx),
             Distribution::OpenMandriva => upgrade_openmandriva(ctx),
             Distribution::PCLinuxOS => upgrade_pclinuxos(ctx),
+            Distribution::Nobara => upgrade_nobara(ctx),
         }
     }
 
@@ -173,7 +184,7 @@ fn update_bedrock(ctx: &ExecutionContext) -> Result<()> {
         debug!("Bedrock distribution {}", distribution);
         match distribution {
             "arch" => archlinux::upgrade_arch_linux(ctx)?,
-            "debian" | "ubuntu" => upgrade_debian(ctx)?,
+            "debian" | "ubuntu" | "linuxmint" => upgrade_debian(ctx)?,
             "centos" | "fedora" => upgrade_redhat(ctx)?,
             "bedrock" => upgrade_bedrock_strata(ctx)?,
             _ => {
@@ -185,13 +196,23 @@ fn update_bedrock(ctx: &ExecutionContext) -> Result<()> {
     Ok(())
 }
 
-fn is_wsl() -> Result<bool> {
-    let output = Command::new("uname").arg("-r").output_checked_utf8()?.stdout;
-    debug!("Uname output: {}", output);
-    Ok(output.contains("microsoft"))
+fn upgrade_alpine_linux(ctx: &ExecutionContext) -> Result<()> {
+    let apk = require("apk")?;
+    let sudo = require_option(ctx.sudo().as_ref(), REQUIRE_SUDO.to_string())?;
+
+    ctx.run_type().execute(sudo).arg(&apk).arg("update").status_checked()?;
+    ctx.run_type().execute(sudo).arg(&apk).arg("upgrade").status_checked()
 }
 
-fn upgrade_alpine_linux(ctx: &ExecutionContext) -> Result<()> {
+fn upgrade_chimera_linux(ctx: &ExecutionContext) -> Result<()> {
+    let apk = require("apk")?;
+    let sudo = require_option(ctx.sudo().as_ref(), REQUIRE_SUDO.to_string())?;
+
+    ctx.run_type().execute(sudo).arg(&apk).arg("update").status_checked()?;
+    ctx.run_type().execute(sudo).arg(&apk).arg("upgrade").status_checked()
+}
+
+fn upgrade_wolfi_linux(ctx: &ExecutionContext) -> Result<()> {
     let apk = require("apk")?;
     let sudo = require_option(ctx.sudo().as_ref(), REQUIRE_SUDO.to_string())?;
 
@@ -230,7 +251,41 @@ fn upgrade_redhat(ctx: &ExecutionContext) -> Result<()> {
     Ok(())
 }
 
-fn upgrade_fedora_silverblue(ctx: &ExecutionContext) -> Result<()> {
+fn upgrade_nobara(ctx: &ExecutionContext) -> Result<()> {
+    let sudo = require_option(ctx.sudo().as_ref(), REQUIRE_SUDO.to_string())?;
+    let pkg_manager = require("dnf")?;
+
+    let mut update_command = ctx.run_type().execute(sudo);
+    update_command.arg(&pkg_manager);
+
+    if ctx.config().yes(Step::System) {
+        update_command.arg("-y");
+    }
+
+    update_command.arg("update");
+    // See https://nobaraproject.org/docs/upgrade-troubleshooting/how-do-i-update-the-system/
+    update_command.args([
+        "rpmfusion-nonfree-release",
+        "rpmfusion-free-release",
+        "fedora-repos",
+        "nobara-repos",
+    ]);
+    update_command.arg("--refresh").status_checked()?;
+
+    let mut upgrade_command = ctx.run_type().execute(sudo);
+    upgrade_command.arg(&pkg_manager);
+
+    if ctx.config().yes(Step::System) {
+        upgrade_command.arg("-y");
+    }
+
+    upgrade_command.arg("distro-sync");
+
+    upgrade_command.status_checked()?;
+    Ok(())
+}
+
+fn upgrade_fedora_immutable(ctx: &ExecutionContext) -> Result<()> {
     let ostree = require("rpm-ostree")?;
     let mut command = ctx.run_type().execute(ostree);
     command.arg("upgrade");
@@ -317,6 +372,7 @@ fn upgrade_openmandriva(ctx: &ExecutionContext) -> Result<()> {
 
     Ok(())
 }
+
 fn upgrade_pclinuxos(ctx: &ExecutionContext) -> Result<()> {
     let sudo = require_option(ctx.sudo().as_ref(), REQUIRE_SUDO.to_string())?;
     let mut command_update = ctx.run_type().execute(sudo);
@@ -708,14 +764,52 @@ fn upgrade_neon(ctx: &ExecutionContext) -> Result<()> {
     Ok(())
 }
 
+/// `needrestart` should be skipped if:
+///
+/// 1. This is a redhat-based distribution
+/// 2. This is a debian-based distribution and it is using `nala` as the `apt`
+///    alternative
+fn should_skip_needrestart() -> Result<()> {
+    let distribution = Distribution::detect()?;
+    let msg = "needrestart will be ran by the package manager";
+
+    if distribution.redhat_based() {
+        return Err(SkipStep(String::from(msg)).into());
+    }
+
+    if matches!(distribution, Distribution::Debian) {
+        let apt = which("apt-fast")
+            .or_else(|| {
+                if which("mist").is_some() {
+                    Some(PathBuf::from("mist"))
+                } else {
+                    None
+                }
+            })
+            .or_else(|| {
+                if Path::new("/usr/bin/nala").exists() {
+                    Some(Path::new("/usr/bin/nala").to_path_buf())
+                } else {
+                    None
+                }
+            })
+            .unwrap_or_else(|| PathBuf::from("apt-get"));
+
+        let is_nala = apt.ends_with("nala");
+
+        if is_nala {
+            return Err(SkipStep(String::from(msg)).into());
+        }
+    }
+
+    Ok(())
+}
+
 pub fn run_needrestart(ctx: &ExecutionContext) -> Result<()> {
     let sudo = require_option(ctx.sudo().as_ref(), REQUIRE_SUDO.to_string())?;
     let needrestart = require("needrestart")?;
-    let distribution = Distribution::detect()?;
 
-    if distribution.redhat_based() {
-        return Err(SkipStep(String::from("needrestart will be ran by the package manager")).into());
-    }
+    should_skip_needrestart()?;
 
     print_separator("Check for needed restarts");
 
@@ -840,7 +934,12 @@ pub fn run_protonup_update(ctx: &ExecutionContext) -> Result<()> {
 
     print_separator("protonup");
 
-    ctx.run_type().execute(protonup).status_checked()?;
+    let mut cmd = ctx.run_type().execute(protonup);
+    if ctx.config().yes(Step::Protonup) {
+        cmd.arg("--yes");
+    }
+    cmd.status_checked()?;
+
     Ok(())
 }
 
@@ -913,6 +1012,80 @@ pub fn run_config_update(ctx: &ExecutionContext) -> Result<()> {
     Ok(())
 }
 
+pub fn run_lure_update(ctx: &ExecutionContext) -> Result<()> {
+    let lure = require("lure")?;
+
+    print_separator("LURE");
+
+    let mut exe = ctx.run_type().execute(lure);
+
+    if ctx.config().yes(Step::Lure) {
+        exe.args(["-i=false", "up"]);
+    } else {
+        exe.arg("up");
+    }
+
+    exe.status_checked()
+}
+
+pub fn run_waydroid(ctx: &ExecutionContext) -> Result<()> {
+    let sudo = require_option(ctx.sudo().as_ref(), REQUIRE_SUDO.to_string())?;
+    let waydroid = require("waydroid")?;
+    let status = ctx.run_type().execute(&waydroid).arg("status").output_checked_utf8()?;
+    // example output of `waydroid status`:
+    //
+    // ```sh
+    // $ waydroid status
+    // Session:        RUNNING
+    // Container:      RUNNING
+    // Vendor type:    MAINLINE
+    // IP address:     192.168.240.112
+    // Session user:   w568w(1000)
+    // Wayland display:        wayland-0
+    // ```
+    //
+    // ```sh
+    // $ waydroid status
+    // Session:        STOPPED
+    // Vendor type:    MAINLINE
+    // ```
+    let session = status
+        .stdout
+        .lines()
+        .find(|line| line.contains("Session:"))
+        .expect("the output of `waydroid status` should contain `Session:`");
+    let is_container_running = session.contains("RUNNING");
+    let assume_yes = ctx.config().yes(Step::Waydroid);
+
+    print_separator("Waydroid");
+
+    if is_container_running && !assume_yes {
+        let update_allowed =
+            prompt_yesno("Going to execute `waydroid upgrade`, which would STOP the running container, is this ok?")?;
+        if !update_allowed {
+            return Err(SkipStep("Skip the Waydroid step because the user don't want to proceed".to_string()).into());
+        }
+    }
+    ctx.run_type()
+        .execute(sudo)
+        .arg(&waydroid)
+        .arg("upgrade")
+        .status_checked()
+}
+
+pub fn run_auto_cpufreq(ctx: &ExecutionContext) -> Result<()> {
+    let sudo = require_option(ctx.sudo().as_ref(), REQUIRE_SUDO.to_string())?;
+    let auto_cpu_freq = require("auto-cpufreq")?;
+
+    print_separator("auto-cpufreq");
+
+    ctx.run_type()
+        .execute(sudo)
+        .arg(auto_cpu_freq)
+        .arg("--update")
+        .status_checked()
+}
+
 #[cfg(test)]
 mod tests {
     use super::*;
@@ -925,6 +1098,11 @@ mod tests {
         );
     }
 
+    #[test]
+    fn test_wolfi() {
+        test_template(include_str!("os_release/wolfi"), Distribution::Wolfi);
+    }
+
     #[test]
     fn test_arch_linux() {
         test_template(include_str!("os_release/arch"), Distribution::Arch);
@@ -976,6 +1154,22 @@ mod tests {
         test_template(include_str!("os_release/fedora"), Distribution::Fedora);
     }
 
+    #[test]
+    fn test_fedora_immutable() {
+        test_template(
+            include_str!("os_release/fedorasilverblue"),
+            Distribution::FedoraImmutable,
+        );
+        test_template(include_str!("os_release/fedorakinoite"), Distribution::FedoraImmutable);
+        test_template(include_str!("os_release/fedoraonyx"), Distribution::FedoraImmutable);
+        test_template(include_str!("os_release/fedorasericea"), Distribution::FedoraImmutable);
+        test_template(include_str!("os_release/fedoraiot"), Distribution::FedoraImmutable);
+        test_template(
+            include_str!("os_release/fedoraswayatomic"),
+            Distribution::FedoraImmutable,
+        );
+    }
+
     #[test]
     fn test_manjaro() {
         test_template(include_str!("os_release/manjaro"), Distribution::Arch);
@@ -1045,4 +1239,9 @@ mod tests {
     fn test_solus() {
         test_template(include_str!("os_release/solus"), Distribution::Solus);
     }
+
+    #[test]
+    fn test_nobara() {
+        test_template(include_str!("os_release/nobara"), Distribution::Nobara);
+    }
 }

src/steps/os/macos.rs

@@ -4,6 +4,7 @@ use crate::terminal::{print_separator, prompt_yesno};
 use crate::utils::{require_option, REQUIRE_SUDO};
 use crate::{utils::require, Step};
 use color_eyre::eyre::Result;
+use std::collections::HashSet;
 use std::fs;
 use std::process::Command;
 use tracing::debug;
@@ -41,7 +42,7 @@ pub fn run_mas(ctx: &ExecutionContext) -> Result<()> {
 pub fn upgrade_macos(ctx: &ExecutionContext) -> Result<()> {
     print_separator("macOS system update");
 
-    let should_ask = !(ctx.config().yes(Step::System)) || (ctx.config().dry_run());
+    let should_ask = !(ctx.config().yes(Step::System) || ctx.config().dry_run());
     if should_ask {
         println!("Finding available software");
         if system_update_available()? {
@@ -93,3 +94,148 @@ pub fn run_sparkle(ctx: &ExecutionContext) -> Result<()> {
     }
     Ok(())
 }
+
+pub fn update_xcodes(ctx: &ExecutionContext) -> Result<()> {
+    let xcodes = require("xcodes")?;
+    print_separator("Xcodes");
+
+    let should_ask = !(ctx.config().yes(Step::Xcodes) || ctx.config().dry_run());
+
+    let releases = ctx
+        .run_type()
+        .execute(&xcodes)
+        .args(["update"])
+        .output_checked_utf8()?
+        .stdout;
+
+    let releases_installed: Vec<String> = releases
+        .lines()
+        .filter(|r| r.contains("(Installed)"))
+        .map(String::from)
+        .collect();
+
+    if releases_installed.is_empty() {
+        println!("No Xcode releases installed.");
+        return Ok(());
+    }
+
+    let (installed_gm, installed_beta, installed_regular) =
+        releases_installed
+            .iter()
+            .fold((false, false, false), |(gm, beta, regular), release| {
+                (
+                    gm || release.contains("GM") || release.contains("Release Candidate"),
+                    beta || release.contains("Beta"),
+                    regular
+                        || !(release.contains("GM")
+                            || release.contains("Release Candidate")
+                            || release.contains("Beta")),
+                )
+            });
+
+    let releases_gm = releases
+        .lines()
+        .filter(|&r| r.matches("GM").count() > 0 || r.matches("Release Candidate").count() > 0)
+        .map(String::from)
+        .collect();
+    let releases_beta = releases
+        .lines()
+        .filter(|&r| r.matches("Beta").count() > 0)
+        .map(String::from)
+        .collect();
+    let releases_regular = releases
+        .lines()
+        .filter(|&r| {
+            r.matches("GM").count() == 0
+                && r.matches("Release Candidate").count() == 0
+                && r.matches("Beta").count() == 0
+        })
+        .map(String::from)
+        .collect();
+
+    if installed_gm {
+        process_xcodes_releases(releases_gm, should_ask, ctx)?;
+    }
+    if installed_beta {
+        process_xcodes_releases(releases_beta, should_ask, ctx)?;
+    }
+    if installed_regular {
+        process_xcodes_releases(releases_regular, should_ask, ctx)?;
+    }
+
+    let releases_new = ctx
+        .run_type()
+        .execute(&xcodes)
+        .args(["list"])
+        .output_checked_utf8()?
+        .stdout;
+
+    let releases_gm_new_installed: HashSet<_> = releases_new
+        .lines()
+        .filter(|release| {
+            release.contains("(Installed)") && (release.contains("GM") || release.contains("Release Candidate"))
+        })
+        .collect();
+    let releases_beta_new_installed: HashSet<_> = releases_new
+        .lines()
+        .filter(|release| release.contains("(Installed)") && release.contains("Beta"))
+        .collect();
+    let releases_regular_new_installed: HashSet<_> = releases_new
+        .lines()
+        .filter(|release| {
+            release.contains("(Installed)")
+                && !(release.contains("GM") || release.contains("Release Candidate") || release.contains("Beta"))
+        })
+        .collect();
+
+    for releases_new_installed in [
+        releases_gm_new_installed,
+        releases_beta_new_installed,
+        releases_regular_new_installed,
+    ] {
+        if should_ask && releases_new_installed.len() == 2 {
+            let answer_uninstall = prompt_yesno("Would you like to move the former Xcode release to the trash?")?;
+            if answer_uninstall {
+                let _ = ctx
+                    .run_type()
+                    .execute(&xcodes)
+                    .args([
+                        "uninstall",
+                        releases_new_installed.iter().next().cloned().unwrap_or_default(),
+                    ])
+                    .status_checked();
+            }
+        }
+    }
+
+    Ok(())
+}
+
+pub fn process_xcodes_releases(releases_filtered: Vec<String>, should_ask: bool, ctx: &ExecutionContext) -> Result<()> {
+    let xcodes = require("xcodes")?;
+
+    if releases_filtered
+        .last()
+        .map(|s| !s.contains("(Installed)"))
+        .unwrap_or(true)
+        && !releases_filtered.is_empty()
+    {
+        println!(
+            "New Xcode release detected: {}",
+            releases_filtered.last().cloned().unwrap_or_default()
+        );
+        if should_ask {
+            let answer_install = prompt_yesno("Would you like to install it?")?;
+            if answer_install {
+                let _ = ctx
+                    .run_type()
+                    .execute(xcodes)
+                    .args(["install", &releases_filtered.last().cloned().unwrap_or_default()])
+                    .status_checked();
+            }
+            println!();
+        }
+    }
+
+    Ok(())
+}

src/steps/os/openbsd.rs

@@ -1,23 +1,33 @@
+use crate::command::CommandExt;
 use crate::execution_context::ExecutionContext;
 use crate::terminal::print_separator;
 use crate::utils::{require_option, REQUIRE_SUDO};
 use color_eyre::eyre::Result;
-use std::path::PathBuf;
 
 pub fn upgrade_openbsd(ctx: &ExecutionContext) -> Result<()> {
     let sudo = require_option(ctx.sudo().as_ref(), REQUIRE_SUDO.to_string())?;
     print_separator("OpenBSD Update");
     ctx.run_type()
         .execute(sudo)
-        .args(&["/usr/sbin/sysupgrade", "-n"])
+        .args(["/usr/sbin/sysupgrade", "-n"])
         .status_checked()
 }
 
 pub fn upgrade_packages(ctx: &ExecutionContext) -> Result<()> {
     let sudo = require_option(ctx.sudo().as_ref(), REQUIRE_SUDO.to_string())?;
     print_separator("OpenBSD Packages");
+
+    if ctx.config().cleanup() {
+        ctx.run_type()
+            .execute(sudo)
+            .args(["/usr/sbin/pkg_delete", "-ac"])
+            .status_checked()?;
+    }
+
     ctx.run_type()
         .execute(sudo)
-        .args(&["/usr/sbin/pkg_add", "-u"])
-        .status_checked()
+        .args(["/usr/sbin/pkg_add", "-u"])
+        .status_checked()?;
+
+    Ok(())
 }

src/steps/os/os_release/fedoraiot

@@ -0,0 +1,22 @@
+NAME="Fedora Linux"
+VERSION="39.20240415.0 (IoT Edition)"
+ID=fedora
+VERSION_ID=39
+VERSION_CODENAME=""
+PLATFORM_ID="platform:f39"
+PRETTY_NAME="Fedora Linux 39.20240415.0 (IoT Edition)"
+ANSI_COLOR="0;38;2;60;110;180"
+LOGO=fedora-logo-icon
+CPE_NAME="cpe:/o:fedoraproject:fedora:39"
+HOME_URL="https://fedoraproject.org/"
+DOCUMENTATION_URL="https://docs.fedoraproject.org/en-US/fedora/f39/system-administrators-guide/"
+SUPPORT_URL="https://ask.fedoraproject.org/"
+BUG_REPORT_URL="https://bugzilla.redhat.com/"
+REDHAT_BUGZILLA_PRODUCT="Fedora"
+REDHAT_BUGZILLA_PRODUCT_VERSION=39
+REDHAT_SUPPORT_PRODUCT="Fedora"
+REDHAT_SUPPORT_PRODUCT_VERSION=39
+SUPPORT_END=2024-11-12
+VARIANT="IoT Edition"
+VARIANT_ID=iot
+OSTREE_VERSION='39.20240415.0'

src/steps/os/os_release/fedorakinoite

@@ -0,0 +1,23 @@
+NAME="Fedora Linux"
+VERSION="39.20240105.0 (Kinoite)"
+ID=fedora
+VERSION_ID=39
+VERSION_CODENAME=""
+PLATFORM_ID="platform:f39"
+PRETTY_NAME="Fedora Linux 39.20240105.0 (Kinoite)"
+ANSI_COLOR="0;38;2;60;110;180"
+LOGO=fedora-logo-icon
+CPE_NAME="cpe:/o:fedoraproject:fedora:39"
+DEFAULT_HOSTNAME="fedora"
+HOME_URL="https://kinoite.fedoraproject.org"
+DOCUMENTATION_URL="https://docs.fedoraproject.org/en-US/fedora-kinoite/"
+SUPPORT_URL="https://ask.fedoraproject.org/"
+BUG_REPORT_URL="https://pagure.io/fedora-kde/SIG/issues"
+REDHAT_BUGZILLA_PRODUCT="Fedora"
+REDHAT_BUGZILLA_PRODUCT_VERSION=39
+REDHAT_SUPPORT_PRODUCT="Fedora"
+REDHAT_SUPPORT_PRODUCT_VERSION=39
+SUPPORT_END=2024-11-12
+VARIANT="Kinoite"
+VARIANT_ID=kinoite
+OSTREE_VERSION='39.20240105.0'

src/steps/os/os_release/fedoraonyx

@@ -0,0 +1,22 @@
+NAME="Fedora Linux"
+VERSION="39 (Onyx)"
+ID=fedora
+VERSION_ID=39
+VERSION_CODENAME=""
+PLATFORM_ID="platform:f39"
+PRETTY_NAME="Fedora Linux 39 (Onyx)"
+ANSI_COLOR="0;38;2;60;110;180"
+LOGO=fedora-logo-icon
+CPE_NAME="cpe:/o:fedoraproject:fedora:39"
+DEFAULT_HOSTNAME="fedora"
+HOME_URL="https://fedoraproject.org/onyx/"
+DOCUMENTATION_URL="https://docs.fedoraproject.org/en-US/fedora-onyx/"
+SUPPORT_URL="https://ask.fedoraproject.org/"
+BUG_REPORT_URL="https://bugzilla.redhat.com/"
+REDHAT_BUGZILLA_PRODUCT="Fedora"
+REDHAT_BUGZILLA_PRODUCT_VERSION=39
+REDHAT_SUPPORT_PRODUCT="Fedora"
+REDHAT_SUPPORT_PRODUCT_VERSION=39
+SUPPORT_END=2024-05-14
+VARIANT="Onyx"
+VARIANT_ID=onyx

src/steps/os/os_release/fedorasericea

@@ -0,0 +1,22 @@
+NAME="Fedora Linux"
+VERSION="39 (Sericea)"
+ID=fedora
+VERSION_ID=39
+VERSION_CODENAME=""
+PLATFORM_ID="platform:f39"
+PRETTY_NAME="Fedora Linux 39 (Sericea)"
+ANSI_COLOR="0;38;2;60;110;180"
+LOGO=fedora-logo-icon
+CPE_NAME="cpe:/o:fedoraproject:fedora:39"
+DEFAULT_HOSTNAME="fedora"
+HOME_URL="https://fedoraproject.org/sericea/"
+DOCUMENTATION_URL="https://docs.fedoraproject.org/en-US/fedora-sericea/"
+SUPPORT_URL="https://ask.fedoraproject.org/"
+BUG_REPORT_URL="https://gitlab.com/fedora/sigs/sway/SIG/-/issues"
+REDHAT_BUGZILLA_PRODUCT="Fedora"
+REDHAT_BUGZILLA_PRODUCT_VERSION=39
+REDHAT_SUPPORT_PRODUCT="Fedora"
+REDHAT_SUPPORT_PRODUCT_VERSION=39
+SUPPORT_END=2024-05-14
+VARIANT="Sericea"
+VARIANT_ID=sericea

src/steps/os/os_release/fedorasilverblue

@@ -0,0 +1,22 @@
+NAME="Fedora Linux"
+VERSION="39 (Silverblue)"
+ID=fedora
+VERSION_ID=39
+VERSION_CODENAME=""
+PLATFORM_ID="platform:f39"
+PRETTY_NAME="Fedora Linux 39 (Silverblue)"
+ANSI_COLOR="0;38;2;60;110;180"
+LOGO=fedora-logo-icon
+CPE_NAME="cpe:/o:fedoraproject:fedora:39"
+DEFAULT_HOSTNAME="fedora"
+HOME_URL="https://silverblue.fedoraproject.org"
+DOCUMENTATION_URL="https://docs.fedoraproject.org/en-US/fedora-silverblue/"
+SUPPORT_URL="https://ask.fedoraproject.org/"
+BUG_REPORT_URL="https://github.com/fedora-silverblue/issue-tracker/issues"
+REDHAT_BUGZILLA_PRODUCT="Fedora"
+REDHAT_BUGZILLA_PRODUCT_VERSION=39
+REDHAT_SUPPORT_PRODUCT="Fedora"
+REDHAT_SUPPORT_PRODUCT_VERSION=39
+SUPPORT_END=2024-05-14
+VARIANT="Silverblue"
+VARIANT_ID=silverblue

src/steps/os/os_release/fedoraswayatomic

@@ -0,0 +1,23 @@
+NAME="Fedora Linux"
+VERSION="40.20240426.0 (Sway Atomic)"
+ID=fedora
+VERSION_ID=40
+VERSION_CODENAME=""
+PLATFORM_ID="platform:f40"
+PRETTY_NAME="Fedora Linux 40.20240426.0 (Sway Atomic)"
+ANSI_COLOR="0;38;2;60;110;180"
+LOGO=fedora-logo-icon
+CPE_NAME="cpe:/o:fedoraproject:fedora:40"
+DEFAULT_HOSTNAME="fedora"
+HOME_URL="https://fedoraproject.org/atomic-desktops/sway/"
+DOCUMENTATION_URL="https://docs.fedoraproject.org/en-US/fedora-sericea/"
+SUPPORT_URL="https://ask.fedoraproject.org/"
+BUG_REPORT_URL="https://gitlab.com/fedora/sigs/sway/SIG/-/issues"
+REDHAT_BUGZILLA_PRODUCT="Fedora"
+REDHAT_BUGZILLA_PRODUCT_VERSION=40
+REDHAT_SUPPORT_PRODUCT="Fedora"
+REDHAT_SUPPORT_PRODUCT_VERSION=40
+SUPPORT_END=2025-05-13
+VARIANT="Sway Atomic"
+VARIANT_ID=sway-atomic
+OSTREE_VERSION='40.20240426.0'

src/steps/os/os_release/nobara

@@ -0,0 +1,23 @@
+NAME="Nobara Linux"
+VERSION="39 (GNOME Edition)"
+ID=nobara
+ID_LIKE="rhel centos fedora"
+VERSION_ID=39
+VERSION_CODENAME=""
+PLATFORM_ID="platform:f39"
+PRETTY_NAME="Nobara Linux 39 (GNOME Edition)"
+ANSI_COLOR="0;38;2;60;110;180"
+LOGO=nobara-logo-icon
+CPE_NAME="cpe:/o:nobaraproject:nobara:39"
+DEFAULT_HOSTNAME="nobara"
+HOME_URL="https://nobaraproject.org/"
+DOCUMENTATION_URL="https://www.nobaraproject.org/"
+SUPPORT_URL="https://www.nobaraproject.org/"
+BUG_REPORT_URL="https://gitlab.com/gloriouseggroll/nobara-images"
+REDHAT_BUGZILLA_PRODUCT="Nobara"
+REDHAT_BUGZILLA_PRODUCT_VERSION=39
+REDHAT_SUPPORT_PRODUCT="Nobara"
+REDHAT_SUPPORT_PRODUCT_VERSION=39
+SUPPORT_END=2024-05-14
+VARIANT="GNOME Edition"
+VARIANT_ID=gnome

src/steps/os/os_release/wolfi

@@ -0,0 +1,5 @@
+ID=wolfi
+NAME="Wolfi"
+PRETTY_NAME="Wolfi"
+VERSION_ID="20230201"
+HOME_URL="https://wolfi.dev"

src/steps/os/unix.rs

@@ -1,16 +1,22 @@
+use std::ffi::OsStr;
 use std::fs;
 use std::os::unix::fs::MetadataExt;
+use std::path::Component;
 use std::path::PathBuf;
 use std::process::Command;
 use std::{env::var, path::Path};
 
 use crate::command::CommandExt;
 use crate::{Step, HOME_DIR};
+use color_eyre::eyre::eyre;
+use color_eyre::eyre::Context;
 use color_eyre::eyre::Result;
 use home;
 use ini::Ini;
 use tracing::debug;
 
+#[cfg(target_os = "linux")]
+use super::linux::Distribution;
 use crate::error::SkipStep;
 use crate::execution_context::ExecutionContext;
 #[cfg(any(target_os = "linux", target_os = "macos"))]
@@ -279,10 +285,15 @@ pub fn run_brew_formula(ctx: &ExecutionContext, variant: BrewVariant) -> Result<
     let run_type = ctx.run_type();
 
     variant.execute(run_type).arg("update").status_checked()?;
-    variant
-        .execute(run_type)
-        .args(["upgrade", "--ignore-pinned", "--formula"])
-        .status_checked()?;
+
+    let mut command = variant.execute(run_type);
+    command.args(["upgrade", "--formula"]);
+
+    if ctx.config().brew_fetch_head() {
+        command.arg("--fetch-HEAD");
+    }
+
+    command.status_checked()?;
 
     if ctx.config().cleanup() {
         variant.execute(run_type).arg("cleanup").status_checked()?;
@@ -322,6 +333,9 @@ pub fn run_brew_cask(ctx: &ExecutionContext, variant: BrewVariant) -> Result<()>
         if ctx.config().brew_cask_greedy() {
             brew_args.push("--greedy");
         }
+        if ctx.config().brew_greedy_latest() {
+            brew_args.push("--greedy-latest");
+        }
     }
 
     variant.execute(run_type).args(&brew_args).status_checked()?;
@@ -363,24 +377,8 @@ pub fn run_nix(ctx: &ExecutionContext) -> Result<()> {
     debug!("nix profile: {:?}", profile_path);
     let manifest_json_path = profile_path.join("manifest.json");
 
-    let output = Command::new(&nix_env).args(["--query", "nix"]).output_checked_utf8();
-    debug!("nix-env output: {:?}", output);
-    let should_self_upgrade = output.is_ok();
-
     print_separator("Nix");
 
-    let multi_user = fs::metadata(&nix)?.uid() == 0;
-    debug!("Multi user nix: {}", multi_user);
-
-    #[cfg(target_os = "linux")]
-    {
-        use super::linux::Distribution;
-
-        if let Ok(Distribution::NixOS) = Distribution::detect() {
-            return Err(SkipStep(String::from("Nix on NixOS must be upgraded via nixos-rebuild switch")).into());
-        }
-    }
-
     #[cfg(target_os = "macos")]
     {
         if require("darwin-rebuild").is_ok() {
@@ -392,29 +390,144 @@ pub fn run_nix(ctx: &ExecutionContext) -> Result<()> {
     }
 
     let run_type = ctx.run_type();
-
-    if should_self_upgrade {
-        if multi_user {
-            ctx.execute_elevated(&nix, true)?.arg("upgrade-nix").status_checked()?;
-        } else {
-            run_type.execute(&nix).arg("upgrade-nix").status_checked()?;
-        }
-    }
-
     run_type.execute(nix_channel).arg("--update").status_checked()?;
 
     if Path::new(&manifest_json_path).exists() {
         run_type
-            .execute(&nix)
+            .execute(nix)
+            .args(nix_args())
             .arg("profile")
             .arg("upgrade")
             .arg(".*")
+            .arg("--verbose")
             .status_checked()
     } else {
-        run_type.execute(&nix_env).arg("--upgrade").status_checked()
+        let mut command = run_type.execute(nix_env);
+        command.arg("--upgrade");
+        if let Some(args) = ctx.config().nix_env_arguments() {
+            command.args(args.split_whitespace());
+        };
+        command.status_checked()
     }
 }
 
+pub fn run_nix_self_upgrade(ctx: &ExecutionContext) -> Result<()> {
+    let nix = require("nix")?;
+
+    // Should we attempt to upgrade Nix with `nix upgrade-nix`?
+    #[allow(unused_mut)]
+    let mut should_self_upgrade = cfg!(target_os = "macos");
+
+    #[cfg(target_os = "linux")]
+    {
+        // We can't use `nix upgrade-nix` on NixOS.
+        if let Ok(Distribution::NixOS) = Distribution::detect() {
+            should_self_upgrade = false;
+        }
+    }
+
+    if !should_self_upgrade {
+        return Err(SkipStep(String::from(
+            "`nix upgrade-nix` can only be used on macOS or non-NixOS Linux",
+        ))
+        .into());
+    }
+
+    if nix_profile_dir(&nix)?.is_none() {
+        return Err(SkipStep(String::from(
+            "`nix upgrade-nix` cannot be run when Nix is installed in a profile",
+        ))
+        .into());
+    }
+
+    print_separator("Nix (self-upgrade)");
+
+    let multi_user = fs::metadata(&nix)?.uid() == 0;
+    debug!("Multi user nix: {}", multi_user);
+
+    let nix_args = nix_args();
+    if multi_user {
+        ctx.execute_elevated(&nix, true)?
+            .args(nix_args)
+            .arg("upgrade-nix")
+            .status_checked()
+    } else {
+        ctx.run_type()
+            .execute(&nix)
+            .args(nix_args)
+            .arg("upgrade-nix")
+            .status_checked()
+    }
+}
+
+/// If we try to `nix upgrade-nix` but Nix is installed with `nix profile`, we'll get a `does not
+/// appear to be part of a Nix profile` error.
+///
+/// We duplicate some of the `nix` logic here to avoid this.
+/// See: <https://github.com/NixOS/nix/blob/f0180487a0e4c0091b46cb1469c44144f5400240/src/nix/upgrade-nix.cc#L102-L139>
+///
+/// See: <https://github.com/NixOS/nix/issues/5473>
+fn nix_profile_dir(nix: &Path) -> Result<Option<PathBuf>> {
+    // NOTE: `nix` uses the location of the `nix-env` binary for this but we're using the `nix`
+    // binary; should be the same.
+    let nix_bin_dir = nix.parent();
+    if nix_bin_dir.and_then(|p| p.file_name()) != Some(OsStr::new("bin")) {
+        debug!("Nix is not installed in a `bin` directory: {nix_bin_dir:?}");
+        return Ok(None);
+    }
+
+    let nix_dir = nix_bin_dir
+        .and_then(|bin_dir| bin_dir.parent())
+        .ok_or_else(|| eyre!("Unable to find Nix install directory from Nix binary {nix:?}"))?;
+
+    debug!("Found Nix in {nix_dir:?}");
+
+    let mut profile_dir = nix_dir.to_path_buf();
+    while profile_dir.is_symlink() {
+        profile_dir = profile_dir
+            .parent()
+            .ok_or_else(|| eyre!("Path has no parent: {profile_dir:?}"))?
+            .join(
+                profile_dir
+                    .read_link()
+                    .wrap_err_with(|| format!("Failed to read symlink {profile_dir:?}"))?,
+            );
+
+        // NOTE: `nix` uses a hand-rolled canonicalize function, Rust just uses `realpath`.
+        if profile_dir
+            .canonicalize()
+            .wrap_err_with(|| format!("Failed to canonicalize {profile_dir:?}"))?
+            .components()
+            .any(|component| component == Component::Normal(OsStr::new("profiles")))
+        {
+            break;
+        }
+    }
+
+    debug!("Found Nix profile {profile_dir:?}");
+
+    let user_env = profile_dir
+        .canonicalize()
+        .wrap_err_with(|| format!("Failed to canonicalize {profile_dir:?}"))?;
+
+    Ok(
+        if user_env
+            .file_name()
+            .and_then(|name| name.to_str())
+            .map(|name| name.ends_with("user-environment"))
+            .unwrap_or(false)
+        {
+            Some(profile_dir)
+        } else {
+            None
+        },
+    )
+}
+
+fn nix_args() -> [&'static str; 2] {
+    ["--extra-experimental-features", "nix-command"]
+}
+
 pub fn run_yadm(ctx: &ExecutionContext) -> Result<()> {
     let yadm = require("yadm")?;
 
@@ -438,6 +551,19 @@ pub fn run_asdf(ctx: &ExecutionContext) -> Result<()> {
         .status_checked()
 }
 
+pub fn run_mise(ctx: &ExecutionContext) -> Result<()> {
+    let mise = require("mise")?;
+
+    print_separator("mise");
+
+    ctx.run_type().execute(&mise).arg("upgrade").status_checked()?;
+
+    ctx.run_type()
+        .execute(&mise)
+        .args(["plugins", "update"])
+        .status_checked()
+}
+
 pub fn run_home_manager(ctx: &ExecutionContext) -> Result<()> {
     let home_manager = require("home-manager")?;
 
@@ -467,6 +593,25 @@ pub fn run_pearl(ctx: &ExecutionContext) -> Result<()> {
     ctx.run_type().execute(pearl).arg("update").status_checked()
 }
 
+pub fn run_pyenv(ctx: &ExecutionContext) -> Result<()> {
+    let pyenv = require("pyenv")?;
+    print_separator("pyenv");
+
+    let pyenv_dir = var("PYENV_ROOT")
+        .map(PathBuf::from)
+        .unwrap_or_else(|_| HOME_DIR.join(".pyenv"));
+
+    if !pyenv_dir.exists() {
+        return Err(SkipStep("Pyenv is installed, but $PYENV_ROOT is not set correctly".to_string()).into());
+    }
+
+    if !pyenv_dir.join(".git").exists() {
+        return Err(SkipStep("pyenv is not a git repository".to_string()).into());
+    }
+
+    ctx.run_type().execute(pyenv).arg("update").status_checked()
+}
+
 pub fn run_sdkman(ctx: &ExecutionContext) -> Result<()> {
     let bash = require("bash")?;
 
@@ -538,6 +683,24 @@ pub fn run_bun(ctx: &ExecutionContext) -> Result<()> {
     ctx.run_type().execute(bun).arg("upgrade").status_checked()
 }
 
+pub fn run_bun_packages(ctx: &ExecutionContext) -> Result<()> {
+    let bun = require("bun")?;
+
+    print_separator("Bun Packages");
+
+    let mut package_json: PathBuf = var("BUN_INSTALL")
+        .map(PathBuf::from)
+        .unwrap_or_else(|_| HOME_DIR.join(".bun"));
+    package_json.push("install/global/package.json");
+
+    if !package_json.exists() {
+        println!("No global packages installed");
+        return Ok(());
+    }
+
+    ctx.run_type().execute(bun).args(["-g", "update"]).status_checked()
+}
+
 /// Update dotfiles with `rcm(7)`.
 ///
 /// See: <https://github.com/thoughtbot/rcm>

src/steps/os/windows.rs

@@ -1,4 +1,3 @@
-use std::convert::TryFrom;
 use std::path::Path;
 use std::{ffi::OsStr, process::Command};
 
@@ -10,7 +9,7 @@ use crate::command::CommandExt;
 use crate::execution_context::ExecutionContext;
 use crate::terminal::{print_separator, print_warning};
 use crate::utils::{require, which};
-use crate::{error::SkipStep, steps::git::Repositories};
+use crate::{error::SkipStep, steps::git::RepoStep};
 use crate::{powershell, Step};
 
 pub fn run_chocolatey(ctx: &ExecutionContext) -> Result<()> {
@@ -42,11 +41,6 @@ pub fn run_winget(ctx: &ExecutionContext) -> Result<()> {
 
     print_separator("winget");
 
-    if !ctx.config().enable_winget() {
-        print_warning("Winget is disabled by default. Enable it by setting enable_winget=true in the [windows] section in the configuration.");
-        return Err(SkipStep(String::from("Winget is disabled by default")).into());
-    }
-
     ctx.run_type()
         .execute(winget)
         .args(["upgrade", "--all"])
@@ -128,12 +122,45 @@ fn upgrade_wsl_distribution(wsl: &Path, dist: &str, ctx: &ExecutionContext) -> R
     let topgrade = Command::new(wsl)
         .args(["-d", dist, "bash", "-lc", "which topgrade"])
         .output_checked_utf8()
-        .map_err(|_| SkipStep(String::from("Could not find Topgrade installed in WSL")))?;
+        .map_err(|_| SkipStep(String::from("Could not find Topgrade installed in WSL")))?
+        .stdout // The normal output from `which topgrade` appends a newline, so we trim it here.
+        .trim_end()
+        .to_owned();
 
     let mut command = ctx.run_type().execute(wsl);
+
+    // The `arg` method automatically quotes its arguments.
+    // This means we can't append additional arguments to `topgrade` in WSL
+    // by calling `arg` successively.
+    //
+    // For example:
+    //
+    // ```rust
+    // command
+    //  .args(["-d", dist, "bash", "-c"])
+    //  .arg(format!("TOPGRADE_PREFIX={dist} exec {topgrade}"));
+    // ```
+    //
+    // creates a command string like:
+    // > `C:\WINDOWS\system32\wsl.EXE -d Ubuntu bash -c 'TOPGRADE_PREFIX=Ubuntu exec /bin/topgrade'`
+    //
+    // Adding the following:
+    //
+    // ```rust
+    // command.arg("-v");
+    // ```
+    //
+    // appends the next argument like so:
+    // > `C:\WINDOWS\system32\wsl.EXE -d Ubuntu bash -c 'TOPGRADE_PREFIX=Ubuntu exec /bin/topgrade' -v`
+    // which means `-v` isn't passed to `topgrade`.
+    let mut args = String::new();
+    if ctx.config().verbose() {
+        args.push_str("-v");
+    }
+
     command
         .args(["-d", dist, "bash", "-c"])
-        .arg(format!("TOPGRADE_PREFIX={dist} exec {topgrade}"));
+        .arg(format!("TOPGRADE_PREFIX={dist} exec {topgrade} {args}"));
 
     if ctx.config().yes(Step::Wsl) {
         command.arg("-y");
@@ -174,20 +201,17 @@ pub fn run_wsl_topgrade(ctx: &ExecutionContext) -> Result<()> {
 pub fn windows_update(ctx: &ExecutionContext) -> Result<()> {
     let powershell = powershell::Powershell::windows_powershell();
 
-    if powershell.supports_windows_update() {
-        print_separator("Windows Update");
-        return powershell.windows_update(ctx);
-    }
-
-    let usoclient = require("UsoClient")?;
-
     print_separator("Windows Update");
-    println!("Running Windows Update. Check the control panel for progress.");
-    ctx.run_type()
-        .execute(&usoclient)
-        .arg("ScanInstallWait")
-        .status_checked()?;
-    ctx.run_type().execute(&usoclient).arg("StartInstall").status_checked()
+
+    if powershell.supports_windows_update() {
+        powershell.windows_update(ctx)
+    } else {
+        print_warning(
+            "Consider installing PSWindowsUpdate as the use of Windows Update via USOClient is not supported.",
+        );
+
+        Err(SkipStep("USOClient not supported.".to_string()).into())
+    }
 }
 
 pub fn reboot() -> Result<()> {
@@ -196,7 +220,7 @@ pub fn reboot() -> Result<()> {
     Command::new("shutdown").args(["/R", "/T", "0"]).status_checked()
 }
 
-pub fn insert_startup_scripts(git_repos: &mut Repositories) -> Result<()> {
+pub fn insert_startup_scripts(git_repos: &mut RepoStep) -> Result<()> {
     let startup_dir = crate::WINDOWS_DIRS
         .data_dir()
         .join("Microsoft\\Windows\\Start Menu\\Programs\\Startup");

src/steps/powershell.rs

@@ -111,7 +111,7 @@ impl Powershell {
                 "-NoProfile",
                 "-Command",
                 &format!(
-                    "Import-Module PSWindowsUpdate; Install-WindowsUpdate -MicrosoftUpdate {} -Verbose",
+                    "Start-Process powershell -Verb runAs -ArgumentList 'Import-Module PSWindowsUpdate; Install-WindowsUpdate -MicrosoftUpdate {} -Verbose'",
                     if ctx.config().accept_all_windows_updates() {
                         "-AcceptAll"
                     } else {

src/steps/tmux.rs

@@ -18,7 +18,14 @@ use crate::{
 use std::os::unix::process::CommandExt as _;
 
 pub fn run_tpm(ctx: &ExecutionContext) -> Result<()> {
-    let tpm = HOME_DIR.join(".tmux/plugins/tpm/bin/update_plugins").require()?;
+    let tpm = match env::var("TMUX_PLUGIN_MANAGER_PATH") {
+        // If `TMUX_PLUGIN_MANAGER_PATH` is set, search for
+        // `$TMUX_PLUGIN_MANAGER_PATH/bin/install_plugins/tpm/bin/update_plugins`
+        Ok(var) => PathBuf::from(var).join("bin/install_plugins/tpm/bin/update_plugins"),
+        // Otherwise, use the default location `~/.tmux/plugins/tpm/bin/update_plugins`
+        Err(_) => HOME_DIR.join(".tmux/plugins/tpm/bin/update_plugins"),
+    }
+    .require()?;
 
     print_separator("tmux plugins");
 

src/steps/upgrade.vim

@@ -9,6 +9,11 @@ if exists(":AstroUpdate")
    quitall
 endif
 
+if exists(":MasonUpdate")
+	echo "MasonUpdate"
+	MasonUpdate
+endif
+
 if exists(":NeoBundleUpdate")
     echo "NeoBundle"
     NeoBundleUpdate

src/steps/vim.rs

@@ -57,8 +57,8 @@ fn upgrade(command: &mut Executor, ctx: &ExecutionContext) -> Result<()> {
         let status = output.status;
 
         if !status.success() || ctx.config().verbose() {
-            io::stdout().write(&output.stdout).ok();
-            io::stderr().write(&output.stderr).ok();
+            io::stdout().write_all(&output.stdout).ok();
+            io::stderr().write_all(&output.stderr).ok();
         }
 
         if !status.success() {

src/steps/zsh.rs

@@ -8,10 +8,12 @@ use walkdir::WalkDir;
 
 use crate::command::CommandExt;
 use crate::execution_context::ExecutionContext;
-use crate::git::Repositories;
+use crate::git::RepoStep;
 use crate::terminal::print_separator;
 use crate::utils::{require, PathExt};
 use crate::HOME_DIR;
+use crate::XDG_DIRS;
+use etcetera::base_strategy::BaseStrategy;
 
 pub fn run_zr(ctx: &ExecutionContext) -> Result<()> {
     let zsh = require("zsh")?;
@@ -117,12 +119,12 @@ pub fn run_zinit(ctx: &ExecutionContext) -> Result<()> {
 
     env::var("ZINIT_HOME")
         .map(PathBuf::from)
-        .unwrap_or_else(|_| HOME_DIR.join(".zinit"))
+        .unwrap_or_else(|_| XDG_DIRS.data_dir().join("zinit"))
         .require()?;
 
     print_separator("zinit");
 
-    let cmd = format!("source {} && zinit self-update && zinit update --all", zshrc.display(),);
+    let cmd = format!("source {} && zinit self-update && zinit update --all", zshrc.display());
     ctx.run_type()
         .execute(zsh)
         .args(["-i", "-c", cmd.as_str()])
@@ -137,7 +139,7 @@ pub fn run_zi(ctx: &ExecutionContext) -> Result<()> {
 
     print_separator("zi");
 
-    let cmd = format!("source {} && zi self-update && zi update --all", zshrc.display(),);
+    let cmd = format!("source {} && zi self-update && zi update --all", zshrc.display());
     ctx.run_type().execute(zsh).args(["-i", "-c", &cmd]).status_checked()
 }
 
@@ -176,15 +178,16 @@ pub fn run_oh_my_zsh(ctx: &ExecutionContext) -> Result<()> {
     // children processes won't get it either, so we source the zshrc and set
     // the ZSH variable for topgrade here.
     if ctx.under_ssh() {
-        let zshrc_path = zshrc().require()?;
-        let output = Command::new("zsh")
-            .args([
-                "-c",
-                // ` > /dev/null` is used in case the user's zshrc will have some stdout output.
-                format!("source {} > /dev/null && echo $ZSH", zshrc_path.display()).as_str(),
-            ])
-            .output_checked_utf8()?;
-        env::set_var("ZSH", output.stdout.trim());
+        let res_env_zsh = Command::new("zsh")
+            .args(["-ic", "print -rn -- ${ZSH:?}"])
+            .output_checked_utf8();
+
+        // this command will fail if `ZSH` is not set
+        if let Ok(output) = res_env_zsh {
+            let env_zsh = output.stdout;
+            debug!("Oh-my-zsh: under SSH, setting ZSH={}", env_zsh);
+            env::set_var("ZSH", env_zsh);
+        }
     }
 
     let oh_my_zsh = env::var("ZSH")
@@ -216,19 +219,14 @@ pub fn run_oh_my_zsh(ctx: &ExecutionContext) -> Result<()> {
 
     debug!("oh-my-zsh custom dir: {}", custom_dir.display());
 
-    let mut custom_repos = Repositories::new(ctx.git());
+    let mut custom_repos = RepoStep::try_new()?;
 
     for entry in WalkDir::new(custom_dir).max_depth(2) {
         let entry = entry?;
         custom_repos.insert_if_repo(entry.path());
     }
 
-    custom_repos.remove(&oh_my_zsh.to_string_lossy());
-    if !custom_repos.is_empty() {
-        println!("Pulling custom plugins and themes");
-        ctx.git().multi_pull(&custom_repos, ctx)?;
-    }
-
+    custom_repos.remove(&oh_my_zsh);
     ctx.run_type()
         .execute("zsh")
         .arg(&oh_my_zsh.join("tools/upgrade.sh"))

src/sudo.rs

@@ -26,10 +26,10 @@ impl Sudo {
     pub fn detect() -> Option<Self> {
         which("doas")
             .map(|p| (p, SudoKind::Doas))
-            .or_else(|| which("please").map(|p| (p, SudoKind::Please)))
             .or_else(|| which("sudo").map(|p| (p, SudoKind::Sudo)))
             .or_else(|| which("gsudo").map(|p| (p, SudoKind::Gsudo)))
             .or_else(|| which("pkexec").map(|p| (p, SudoKind::Pkexec)))
+            .or_else(|| which("please").map(|p| (p, SudoKind::Please)))
             .map(|(path, kind)| Self { path, kind })
     }
 
@@ -55,12 +55,6 @@ impl Sudo {
                 // See: https://man.openbsd.org/doas
                 cmd.arg("echo");
             }
-            SudoKind::Please => {
-                // From `man please`
-                //   -w, --warm
-                //   Warm the access token and exit.
-                cmd.arg("-w");
-            }
             SudoKind::Sudo => {
                 // From `man sudo` on macOS:
                 //   -v, --validate
@@ -85,6 +79,12 @@ impl Sudo {
                 // See: https://linux.die.net/man/1/pkexec
                 cmd.arg("echo");
             }
+            SudoKind::Please => {
+                // From `man please`
+                //   -w, --warm
+                //   Warm the access token and exit.
+                cmd.arg("-w");
+            }
         }
         cmd.status_checked().wrap_err("Failed to elevate permissions")
     }
@@ -112,10 +112,10 @@ impl Sudo {
 #[strum(serialize_all = "lowercase")]
 pub enum SudoKind {
     Doas,
-    Please,
     Sudo,
     Gsudo,
     Pkexec,
+    Please,
 }
 
 impl AsRef<OsStr> for Sudo {

src/utils.rs

@@ -5,9 +5,16 @@ use std::path::{Path, PathBuf};
 use std::process::Command;
 
 use color_eyre::eyre::Result;
+
 use tracing::{debug, error};
+use tracing_subscriber::layer::SubscriberExt;
+use tracing_subscriber::reload::{Handle, Layer};
+use tracing_subscriber::util::SubscriberInitExt;
+use tracing_subscriber::{fmt, Registry};
+use tracing_subscriber::{registry, EnvFilter};
 
 use crate::command::CommandExt;
+use crate::config::DEFAULT_LOG_LEVEL;
 use crate::error::SkipStep;
 
 pub trait PathExt
@@ -111,44 +118,13 @@ pub fn string_prepend_str(string: &mut String, s: &str) {
     *string = new_string;
 }
 
-/* sys-info-rs
- *
- * Copyright (c) 2015 Siyu Wang
- *
- * Permission is hereby granted, free of charge, to any person obtaining a copy
- * of this software and associated documentation files (the "Software"), to deal
- * in the Software without restriction, including without limitation the rights
- * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
- * copies of the Software, and to permit persons to whom the Software is
- * furnished to do so, subject to the following conditions:
- *
- * The above copyright notice and this permission notice shall be included in all
- * copies or substantial portions of the Software.
- *
- * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
- * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
- * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
- * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
- * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
- * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
- * SOFTWARE.
- */
 #[cfg(target_family = "unix")]
 pub fn hostname() -> Result<String> {
-    use std::ffi;
-    extern crate libc;
-
-    unsafe {
-        let buf_size = libc::sysconf(libc::_SC_HOST_NAME_MAX) as usize;
-        let mut buf = Vec::<u8>::with_capacity(buf_size + 1);
-
-        if libc::gethostname(buf.as_mut_ptr() as *mut libc::c_char, buf_size) < 0 {
-            return Err(SkipStep(format!("Failed to get hostname: {}", std::io::Error::last_os_error())).into());
-        }
-        let hostname_len = libc::strnlen(buf.as_ptr() as *const libc::c_char, buf_size);
-        buf.set_len(hostname_len);
-
-        Ok(ffi::CString::new(buf).unwrap().into_string().unwrap())
+    match nix::unistd::gethostname() {
+        Ok(os_str) => Ok(os_str
+            .into_string()
+            .map_err(|_| SkipStep("Failed to get a UTF-8 encoded hostname".into()))?),
+        Err(e) => Err(e.into()),
     }
 }
 
@@ -251,3 +227,46 @@ pub fn check_is_python_2_or_shim(python: PathBuf) -> Result<PathBuf> {
 
     Ok(python)
 }
+
+/// Set up the tracing logger
+///
+/// # Return value
+/// A reload handle will be returned so that we can change the log level at
+/// runtime.
+pub fn install_tracing(filter_directives: &str) -> Result<Handle<EnvFilter, Registry>> {
+    let env_filter = EnvFilter::try_new(filter_directives)
+        .or_else(|_| EnvFilter::try_from_default_env())
+        .or_else(|_| EnvFilter::try_new(DEFAULT_LOG_LEVEL))?;
+
+    let fmt_layer = fmt::layer().with_target(false).without_time();
+
+    let (filter, reload_handle) = Layer::new(env_filter);
+
+    registry().with(filter).with(fmt_layer).init();
+
+    Ok(reload_handle)
+}
+
+/// Update the tracing logger with new `filter_directives`.
+pub fn update_tracing(reload_handle: &Handle<EnvFilter, Registry>, filter_directives: &str) -> Result<()> {
+    let new = EnvFilter::try_new(filter_directives)
+        .or_else(|_| EnvFilter::try_from_default_env())
+        .or_else(|_| EnvFilter::try_new(DEFAULT_LOG_LEVEL))?;
+    reload_handle.modify(|old| *old = new)?;
+
+    Ok(())
+}
+
+/// Set up the error handler crate
+pub fn install_color_eyre() -> Result<()> {
+    color_eyre::config::HookBuilder::new()
+        // Don't display the backtrace reminder by default:
+        //   Backtrace omitted. Run with RUST_BACKTRACE=1 environment variable to display it.
+        //   Run with RUST_BACKTRACE=full to include source snippets.
+        .display_env_section(false)
+        // Display location information by default:
+        //   Location:
+        //      src/steps.rs:92
+        .display_location_section(true)
+        .install()
+}